BAC Information

Click to search

BAC

Clone NameB6Ng01-150K08
Chromosome2 (Build37)
Map Location 23,822,773 - 24,014,341
singlet/doubletdoublet
Overlap geneHnmt, Tbpl2, Il1f8
Upstream geneAbi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1
Downstream geneLOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150K08.bB6Ng01-150K08.g
ACCDH946673DH946674
length8981,169
definitionDH946673|Mus musculus domesticus DNA, BAC clone: B6Ng01-150K08, 5' end.DH946674|Mus musculus domesticus DNA, BAC clone: B6Ng01-150K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,013,443 - 24,014,341)(23,822,773 - 23,823,936)
sequence
gaattccgtgtctctacatgctatcaagctaagaatgactagaaacagga
agaaaattgggaagatatcagacctcaagcacagacaaatccagactttc
acctctcaccctgttatccctccaaatcagggctggtgagaatctttctc
catcccagtttcccacgttagccatgtaactgtggttcttcattgctttc
ctgagactttttttcttcttgataccagaacctcagttatcacctgggtt
catattgtttcccaaaaacaaaataaaatagattattatctttgcaccta
aaaataatactatagtctttcacttatgtggcccatgagatatatatgaa
aatatgctgtagggtttctaaaattgctccttaagactagactcacctaa
aaatactttgtttgtcatagttagtgtcatcttgttacctacatcaaata
cttaaatgaaagcttaggtaaatttgaggttttgaggcagaaaagtagaa
tccttggcctctggtggcatcatggaaccagcatggaacccagctcatgc
tgacccactggttttatatatggaagaaatataccacagtgttatttaag
ttctcattgtgtgagttttctcccattcttggttgaatttaactagttaa
taatttaggatgagatgtccaagagttttggtgttctgtatctatttctt
aatagaggacaggaaaagaaatccattcaatacctacttaataaccactc
atgtaagacaaagcactatgtggccactggagatttgacttagggcaagt
cagccatcatcaattcgtatagaaggtattgagaaaatggaaagagatgt
aaaagaaaaaattaccaaaaactatgttgggggcgggggggggggagt
gaattctttgaagccttaaatctagtctgatttttagtggcataataaat
gttctgcttaggcatatcagcagtgaagacaaggtacatttttattactc
ctcatatctcagaagaaattttctgcacatcatctcaaaaggaacctttc
cttgccctatttctttattatattcaattagctaagtgagtaaaattcca
aagaattaaaaggttcatttcacttctcaaagtgatcagtgatttccaag
gggatacaaataagcaaataaactaagtaagaaaattgattcaagaattg
aagaataaagtcagcattgtaaccctgaaagtcagcaacatggctgagct
tagcaagaaaactgagtaaaagaagagtaatggaacacatgctatattaa
agtaaagaagagacgattaggagggtgaacgatgagaagaagtgggactt
aagaggtaaggggagcacagtggaggtaaggaatgactaatacctgtaaa
ttagcataaatatataaaatgttatgatgaaatacatttgtctgtataat
aatgataaacagttttcaatgcaagcattatgaaaaacactaatattgta
ctctcactaattttcacatacaatatattgctattaactataatcatcaa
gtagtctaagacttcattaacttagacttttacagtcactcacatcactt
aaatacctcccctctgcctctgtacattcctttctactttcttgaatata
actaaaaagcatgttcagtatttgtttttctgcctttggttcaatatgct
tagtatagtgtcctccagaatcacctatatagtcataagtgagaaatttt
ttcttgttgcttaaaggaaaaaggtctgctgtgtgtgcatatattgtctt
atttcttttgcctgtttattgacacacataaacaacatatctagatattg
tgaataataatatctagatatgcagaagacaaaaaaaataatggctatgt
cttttcaaaagattaaagacaaagatgccgaggaagtgaaggattattta
attctcattgaaggaaagaaaagttcttcttcaccacctcagaaagcaga
acaagagctctgaagttttttgatagggtggtgccagaaaaggctttgtg
tgatgctctgattggtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_24013443_24014341
seq2: B6Ng01-150K08.b_49_946 (reverse)

seq1  ACT-CCCCCCCCCCGCCCCCAACATAGTTTTTGGTAATTTTTTTCTTTTT  49
      ||| |||||||||||||||||||||||||||||||||||||||   ||||
seq2  ACTCCCCCCCCCCCGCCCCCAACATAGTTTTTGGTAATTTTTT--CTTTT  48

seq1  ACATCTCTTTCCATTTTCTCAATACCTTCTATACGAATTGATGATGGCTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTTTCCATTTTCTCAATACCTTCTATACGAATTGATGATGGCTG  98

seq1  ACTTGCCCTAAGTCAAATCTCCAGTGGCCACATAGTGCTTTGTCTTACAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCCTAAGTCAAATCTCCAGTGGCCACATAGTGCTTTGTCTTACAT  148

seq1  GAGTGGTTATTAAGTAGGTATTGAATGGATTTCTTTTCCTGTCCTCTATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTTATTAAGTAGGTATTGAATGGATTTCTTTTCCTGTCCTCTATT  198

seq1  AAGAAATAGATACAGAACACCAAAACTCTTGGACATCTCATCCTAAATTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAGATACAGAACACCAAAACTCTTGGACATCTCATCCTAAATTA  248

seq1  TTAACTAGTTAAATTCAACCAAGAATGGGAGAAAACTCACACAATGAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAGTTAAATTCAACCAAGAATGGGAGAAAACTCACACAATGAGAA  298

seq1  CTTAAATAACACTGTGGTATATTTCTTCCATATATAAAACCAGTGGGTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATAACACTGTGGTATATTTCTTCCATATATAAAACCAGTGGGTCA  348

seq1  GCATGAGCTGGGTTCCATGCTGGTTCCATGATGCCACCAGAGGCCAAGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGCTGGGTTCCATGCTGGTTCCATGATGCCACCAGAGGCCAAGGA  398

seq1  TTCTACTTTTCTGCCTCAAAACCTCAAATTTACCTAAGCTTTCATTTAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTTTCTGCCTCAAAACCTCAAATTTACCTAAGCTTTCATTTAAG  448

seq1  TATTTGATGTAGGTAACAAGATGACACTAACTATGACAAACAAAGTATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATGTAGGTAACAAGATGACACTAACTATGACAAACAAAGTATTT  498

seq1  TTAGGTGAGTCTAGTCTTAAGGAGCAATTTTAGAAACCCTACAGCATATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGAGTCTAGTCTTAAGGAGCAATTTTAGAAACCCTACAGCATATT  548

seq1  TTCATATATATCTCATGGGCCACATAAGTGAAAGACTATAGTATTATTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATATATCTCATGGGCCACATAAGTGAAAGACTATAGTATTATTTT  598

seq1  TAGGTGCAAAGATAATAATCTATTTTATTTTGTTTTTGGGAAACAATATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGCAAAGATAATAATCTATTTTATTTTGTTTTTGGGAAACAATATG  648

seq1  AACCCAGGTGATAACTGAGGTTCTGGTATCAAGAAGAAAAAAAGTCTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGTGATAACTGAGGTTCTGGTATCAAGAAGAAAAAAAGTCTCAG  698

seq1  GAAAGCAATGAAGAACCACAGTTACATGGCTAACGTGGGAAACTGGGATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAATGAAGAACCACAGTTACATGGCTAACGTGGGAAACTGGGATG  748

seq1  GAGAAAGATTCTCACCAGCCCTGATTTGGAGGGATAACAGGGTGAGAGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGATTCTCACCAGCCCTGATTTGGAGGGATAACAGGGTGAGAGGT  798

seq1  GAAAGTCTGGATTTGTCTGTGCTTGAGGTCTGATATCTTCCCAATTTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTGGATTTGTCTGTGCTTGAGGTCTGATATCTTCCCAATTTTCT  848

seq1  TCCTGTTTCTAGTCATTCTTAGCTTGATAGCATGTAGAGACACGGAATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTCTAGTCATTCTTAGCTTGATAGCATGTAGAGACACGGAATTC  898

seq1: chr2_23822773_23823936
seq2: B6Ng01-150K08.g_67_1235

seq1  GAATTCTTTGAAGCCTTAAATCTAGTCTGATTTTTAGTGGCATAATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAAGCCTTAAATCTAGTCTGATTTTTAGTGGCATAATAAAT  50

seq1  GTTCTGCTTAGGCATATCAGCAGTGAAGACAAGGTACATTTTTATTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCTTAGGCATATCAGCAGTGAAGACAAGGTACATTTTTATTACTC  100

seq1  CTCATATCTCAGAAGAAATTTTCTGCACATCATCTCAAAAGGAACCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATCTCAGAAGAAATTTTCTGCACATCATCTCAAAAGGAACCTTTC  150

seq1  CTTGCCCTATTTCTTTATTATATTCAATTAGCTAAGTGAGTAAAATTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCTATTTCTTTATTATATTCAATTAGCTAAGTGAGTAAAATTCCA  200

seq1  AAGAATTAAAAGGTTCATTTCACTTCTCAAAGTGATCAGTGATTTCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAAAAGGTTCATTTCACTTCTCAAAGTGATCAGTGATTTCCAAG  250

seq1  GGGATACAAATAAGCAAATAAACTAAGTAAGAAAATTGATTCAAGAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATACAAATAAGCAAATAAACTAAGTAAGAAAATTGATTCAAGAATTG  300

seq1  AAGAATAAAGTCAGCATTGTAACCCTGAAAGTCAGCAACATGGCTGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAGTCAGCATTGTAACCCTGAAAGTCAGCAACATGGCTGAGCT  350

seq1  TAGCAAGAAAACTGAGTAAAAGAAGAGTAATGGAACACATGCTATATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGAAAACTGAGTAAAAGAAGAGTAATGGAACACATGCTATATTAA  400

seq1  AGTAAAGAAGAGACGATTAGGAGGGTGAACGATGAGAAGAAGTGGGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAAGAGACGATTAGGAGGGTGAACGATGAGAAGAAGTGGGACTT  450

seq1  AAGAGGTAAGGGGAGCACAGTGGAGGTAAGGAATGACTAATACCTGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTAAGGGGAGCACAGTGGAGGTAAGGAATGACTAATACCTGTAAA  500

seq1  TTAGCATAAATATATAAAATGTTATGATGAAATACATTTGTCTGTATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATAAATATATAAAATGTTATGATGAAATACATTTGTCTGTATAAT  550

seq1  AATGATAAACAGTTTTCAATGCAAGCATTATGAAAAACACTAATATTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAAACAGTTTTCAATGCAAGCATTATGAAAAACACTAATATTGTA  600

seq1  CTCTCACTAATTTTCACATACAATATATTGCTATTAACTATAATCATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACTAATTTTCACATACAATATATTGCTATTAACTATAATCATCAA  650

seq1  GTAGTCTAAGACTTCATTAACTTAGACTTTTACAGTCACTCACATCACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTAAGACTTCATTAACTTAGACTTTTACAGTCACTCACATCACTT  700

seq1  AAATACCTCCCCTCTGCCTCTGTACATTCCTTTCTACTTTCTTGAATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTCCCCTCTGCCTCTGTACATTCCTTTCTACTTTCTTGAATATA  750

seq1  ACTAAAAAGCATGTTCAGTATTTGTTTTTCTGCCTTTGGTTCAATATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAGCATGTTCAGTATTTGTTTTTCTGCCTTTGGTTCAATATGCT  800

seq1  TAGTATAGTGTCCTCCAGAATCACCTATATAGTCATAAGTGAGAAA-TTT  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAGTATAGTGTCCTCCAGAATCACCTATATAGTCATAAGTGAGAAATTTT  850

seq1  TTCTTGTTGCTTAAGGAAAAAGGGTCTGCTGTGTGTGCATATATTGTCTT  899
      |||||||||||||| | |||| |||||||||||||||||||||||||| |
seq2  TTCTTGTTGCTTAAAGGAAAAAGGTCTGCTGTGTGTGCATATATTGTC-T  899

seq1  TATTTCTTTTGCCTGTTTATTGACACACATTAACAACATATCTAGATATT  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATTTCTTTTGCCTGTTTATTGACACACATAAACAACATATCTAGATATT  949

seq1  GTGAATAATAATATCTAGATATGCAGAAGAC-AAAAAAATAATGGCTATG  998
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTGAATAATAATATCTAGATATGCAGAAGACAAAAAAAATAATGGCTATG  999

seq1  TCTTTTCAAAAGA-TAAAGACAAAGATGCGGAGGAGGTGAAGGATTATTT  1047
      ||||||||||||| ||||||||||||||| ||||| ||||||||||||||
seq2  TCTTTTCAAAAGATTAAAGACAAAGATGCCGAGGAAGTGAAGGATTATTT  1049

seq1  AATTCTCATTGAGGAAAAGAAAAGTTCT--CTCACCA-CTCAGAAAGCAG  1094
      |||||||||||| | |||||||||||||   |||||| ||||||||||||
seq2  AATTCTCATTGAAGGAAAGAAAAGTTCTTCTTCACCACCTCAGAAAGCAG  1099

seq1  -ACAAGAAGCTTCGTGATG-TTTTTGAT-GGGTGGTGCAGGGAAGAGGCT  1141
       ||||| ||||   ||| | |||||||| |||||||||   ||| |||||
seq2  AACAAG-AGCT--CTGAAGTTTTTTGATAGGGTGGTGC-CAGAAAAGGCT  1145

seq1  T--TGTGATGCTCATGATTGGTGAG  1164
      |  |||||||||| |||||||||||
seq2  TTGTGTGATGCTC-TGATTGGTGAG  1169