BAC Information

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BAC

Clone NameB6Ng01-151N07
Chromosome2 (Build37)
Map Location 79,412,734 - 79,557,308
singlet/doubletdoublet
Overlap geneSsfa2, Ppp1r1c
Upstream geneLOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1
Downstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151N07.bB6Ng01-151N07.g
ACCDH947553DH947554
length1,1801,180
definitionDH947553|Mus musculus domesticus DNA, BAC clone: B6Ng01-151N07, 5' end.DH947554|Mus musculus domesticus DNA, BAC clone: B6Ng01-151N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,412,734 - 79,413,931)(79,556,141 - 79,557,308)
sequence
gaattcatatgtataacttaaacacttatttttttatatatattcaccaa
ttacctctgactattacaacattttttgaccctcttttaaaatgctctat
gaaccttgggaggagtgtgtgggatataaatgctctagacatgagtagtt
gttattataaaaagttccttaccaatttgaactctgaagacaagggaaaa
aaatcaggagtaaggtagacaatgtcaggggtgagaattctacactgaag
cacaaggagacagagaggtcaaggatttggaaatgcttgagtatttgcaa
ggccttatttgtctccctctactgccgtggttctcaaccaacctagtgct
gtgaccctttagtacagctcttcatgttgtcttaacccccagctataaca
ttatttttgttgctactttctaactgtaactttgctacctttatgaatca
caatgtaaatatctgtgttctctgatggtcttaggtgatcctgttgaaag
ggtcatttgaccctcccaaaggagttgcaacctgaaagttggtaactgct
tatctgcagggcaagcatttagatgatggtaactgtaagacatatacctt
gcctttaaggcacttttggtatagctagaaaaactaagcctacaatgcct
atgtagaaattaaattactatgttatgtggtgtacacaagactgttgatc
actcaaaaaaggaggaaaaatgatctctgtattcccagtagtattctctg
ggaactgcatggaaaaatgaaagaaaatgaagaggggtggtagtcaaaga
tagaaacttgaatatctaaacggcctttttctactagaagtgttgttact
gtaaagttagccatgaatgtttttcttttttccgtacaatgtggctttag
atagagatgtctaaaaagaatatttgggttccatgtgtagccatgattca
cacaacatggtttgtttcattttctgtattgtagaagtaattatggaaat
tggttgctaccatcctaactcgtggttacttggctcattgtatgatggct
gcattacccacagcagtcttgttgcatttctgtaaatgactgcagtaaaa
gagacttcctaactcttgcattgctctgtaggtgaagttattttcactta
ggaaccaaccacgagggatatcattagtgt
gaattctttcccaagaactcaaggtatttgtagaatatttgtgtctcaga
agtaacaacaacaacaacaacaacaacaacaacaacaacaacaacttaaa
atgtgagatgatattcagattgacttatgaaagcatgattatatctaaaa
tctggttttgctttaacttcctttgtaggtttgtctaatttaaaagactt
gaatgatcttatgttctcaaagcaaactgcagctcaaatctcaacataaa
ataaaataaaacaatataaaataaaataaaaaaataaaataaaatacttg
cttcttagcccctggtaatttctcctgttaagttgtgtgtggaggttctt
ggtaggactctttaaaagtcctgtgtggatttacatggaaaatcccatgc
cttggaagctggtttgtgagtaatgacccctgcacacacacacacacaca
cacacacacacacacacacacacacagagagagagagagagagagagaga
gagacatttgaaagtaagcactcttagtaaagtatccagctcggtgagat
cccaacccctcctccaccccagaccctgctgctgtcacaggtccactagt
tctatactttggtggatttgaccatcaacttgaagcaacttgaaaacaga
caccaaaagagagagagaaagagagagagagagagagagagagacagaga
cagagacagagagagagagatactagtctagccaatggtcattctattat
atttcgccaattataaaaatcagtaagaaacatcattctgacaaagtaaa
aaatgtcattattcacccttttattttatattttttaaattgaatattat
attactttatttgaatgcttcattataacacacattgctataactaagag
ttaaaatatggctctgacgcaaccatttcatttggactgtataatttggt
tattacaggctgaaataattatgaaaaagtaagtcagtcaggttgcaggg
gtgggatggtcttagaggcagctgaacatcatttgtcggtaaggctttcc
acatgggcttgacatggaatagaataatgctgaggggaatgaagaacacg
aatcttccttggatattcttagaaatatgatataggataactggtgggag
gggacttcaacattgggattgtgagctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_79412734_79413931
seq2: B6Ng01-151N07.b_47_1226

seq1  GAATTCATATGTATAACTTAAACACTTATTTTTTTATATATATTCACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGTATAACTTAAACACTTATTTTTTTATATATATTCACCAA  50

seq1  TTACCTCTGACTATTACAACATTTTTTGACCCTCTTTTAAAATGCTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCTGACTATTACAACATTTTTTGACCCTCTTTTAAAATGCTCTAT  100

seq1  GAACCTTGGGAGGAGTGTGTGGGATATAAATGCTCTAGACATGAGTAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTGGGAGGAGTGTGTGGGATATAAATGCTCTAGACATGAGTAGTT  150

seq1  GTTATTATAAAAAGTTCCTTACCAATTTGAACTCTGAAGACAAGGGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTATAAAAAGTTCCTTACCAATTTGAACTCTGAAGACAAGGGAAAA  200

seq1  AAATCAGGAGTAAGGTAGACAATGTCAGGGGTGAGAATTCTACACTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGGAGTAAGGTAGACAATGTCAGGGGTGAGAATTCTACACTGAAG  250

seq1  CACAAGGAGACAGAGAGGTCAAGGATTTGGAAATGCTTGAGTATTTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGAGACAGAGAGGTCAAGGATTTGGAAATGCTTGAGTATTTGCAA  300

seq1  GGCCTTATTTGTCTCCCTCTACTGCCGTGGTTCTCAACCAACCTAGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTATTTGTCTCCCTCTACTGCCGTGGTTCTCAACCAACCTAGTGCT  350

seq1  GTGACCCTTTAGTACAGCTCTTCATGTTGTCTTAACCCCCAGCTATAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCTTTAGTACAGCTCTTCATGTTGTCTTAACCCCCAGCTATAACA  400

seq1  TTATTTTTGTTGCTACTTTCTAACTGTAACTTTGCTACCTTTATGAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTGTTGCTACTTTCTAACTGTAACTTTGCTACCTTTATGAATCA  450

seq1  CAATGTAAATATCTGTGTTCTCTGATGGTCTTAGGTGATCCTGTTGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAAATATCTGTGTTCTCTGATGGTCTTAGGTGATCCTGTTGAAAG  500

seq1  GGTCATTTGACCCTCCCAAAGGAGTTGCAACCTGAAAGTTGGTAACTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTTGACCCTCCCAAAGGAGTTGCAACCTGAAAGTTGGTAACTGCT  550

seq1  TATCTGCAGGGCAAGCATTTAGATGATGGTAACTGTAAGACATATACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCAGGGCAAGCATTTAGATGATGGTAACTGTAAGACATATACCTT  600

seq1  GCCTTTAAGGCACTTTTGGTATAGCTAGAAAAACTAAGCCTACAATGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAAGGCACTTTTGGTATAGCTAGAAAAACTAAGCCTACAATGCCT  650

seq1  ATGTAGAAATTAAATTACTATGTTATGTGGTGTACACAAGACTGTTGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAATTAAATTACTATGTTATGTGGTGTACACAAGACTGTTGATC  700

seq1  ACTCAAAAAAGGAGGAAAAATGATCTCTGTATTCCCAGTAGTATTCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAAAAGGAGGAAAAATGATCTCTGTATTCCCAGTAGTATTCTCTG  750

seq1  GGAACTGCATGGAAAAATGAAAGAAAATGAAGAGGGGTGGTAGTCAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGCATGGAAAAATGAAAGAAAATGAAGAGGGGTGGTAGTCAAAGA  800

seq1  TAGAAACTTGAATATCTAAACGGCCTTTTTCTACTAGAAGTGTTGTTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTTGAATATCTAAACGGCCTTTTTCTACTAGAAGTGTTGTTACT  850

seq1  GTAAAGTTAGCCATGAATGTTTTTCTTTTTTCCGTACAATGTGGCTTTAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTAAAGTTAGCCATGAATGTTTTTCTTTTTTCCGTACAATGTGGCTTT-A  899

seq1  GATAGAGATGTCTAAAAAGAATATTTGGGTTCCATGTGTAGCCATGATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGATGTCTAAAAAGAATATTTGGGTTCCATGTGTAGCCATGATTC  949

seq1  ACACAAAACATGG-TTGTTTCA-TTTCTGTATTTGTAGAAGTAAATTAAT  998
      ||||  ||||||| |||||||| |||||||| ||||||||||||  | ||
seq2  ACAC--AACATGGTTTGTTTCATTTTCTGTA-TTGTAGAAGTAA--TTAT  994

seq1  GGAAATTGGTTGCTAACCATCCTAACTCGTGGTGTACTTGGCTCCATTGT  1048
      |||||||||||||| |||||||||||||||||| ||||||||| ||||||
seq2  GGAAATTGGTTGCT-ACCATCCTAACTCGTGGT-TACTTGGCT-CATTGT  1041

seq1  ATGATGGCTGGCATTACCCACAAGCAGGTCATGTGCCAATTTCTGTATAA  1098
      ||||||||| ||||||||||| |||| ||| |||  | ||||||||| ||
seq2  ATGATGGCT-GCATTACCCAC-AGCA-GTCTTGTTGC-ATTTCTGTA-AA  1086

seq1  TGACTGCAGTAAAAGA-ACTCCATAAACTCTTGCATTGCTCTGTAGGTG-  1146
      |||||||||||||||| ||| | | |||||||||||||||||||||||| 
seq2  TGACTGCAGTAAAAGAGACTTCCT-AACTCTTGCATTGCTCTGTAGGTGA  1135

seq1  AGTAATATTGTCACTTTAGGAAACACCAACAACAGAGGAGTATCATTAGT  1196
      |||  |||| |||| ||||||   |||||| || ||||  ||||||||||
seq2  AGT--TATTTTCAC-TTAGGA---ACCAACCAC-GAGGGATATCATTAGT  1178

seq1  GT  1198
      ||
seq2  GT  1180

seq1: chr2_79556141_79557308
seq2: B6Ng01-151N07.g_68_1247 (reverse)

seq1  AAAAGCTCA-AAT-CCAATGTTTGAAGTCCACT--CAACAGTTATCTGAT  46
      ||||||||| ||| |||||| ||||||||| ||  || ||||||||  ||
seq2  AAAAGCTCACAATCCCAATG-TTGAAGTCCCCTCCCACCAGTTATCCTAT  49

seq1  A-CTAATTTCTAAGGAATGT-CAGAGAAG-TCTGTGTTC-TCATT-CCCT  91
      | |  |||||||| |||| | ||  |||| |  |||||| ||||| ||||
seq2  ATCATATTTCTAA-GAATATCCAAGGAAGATTCGTGTTCTTCATTCCCCT  98

seq1  CAGCATTTATTTCTATT-CATGTCAAG-CCATGTGGAAAGCCTTAACGAC  139
      |||||||   ||||||| ||||||||| ||||||||||||||||| ||||
seq2  CAGCATT--ATTCTATTCCATGTCAAGCCCATGTGGAAAGCCTTACCGAC  146

seq1  AAATGATG-TCAGCTGCTTCTAAGGACCATCC--ACCCTGCAA-CTGACT  185
      |||||||| |||||||| ||||| ||||||||   |||||||| ||||||
seq2  AAATGATGTTCAGCTGCCTCTAA-GACCATCCCACCCCTGCAACCTGACT  195

seq1  GACTTACTTTTTCATAATTA-TTCAGCCTGT-ATAACCAAATTATACAGT  233
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  GACTTACTTTTTCATAATTATTTCAGCCTGTAATAACCAAATTATACAGT  245

seq1  -CAAATGGAATGGTTGCGTCAGAGGCATATTTTAACTCTTAGTTATAGCA  282
       |||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  CCAAATGAAATGGTTGCGTCAGAGCCATATTTTAACTCTTAGTTATAGCA  295

seq1  ATGTGTGTTATAATGTAAGCATTCAAATAAAGTAATATAATATTCAATTT  332
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTTATAATG-AAGCATTCAAATAAAGTAATATAATATTCAATTT  344

seq1  AAAAATAATAAAATGAAAGGGTGAATAATGACATTTTTTACTTTGTCAGA  382
      |||||  ||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAAAATATAAAATAAAAGGGTGAATAATGACATTTTTTACTTTGTCAGA  394

seq1  ATGATGTTTCTTACTGATTTTTATAATTGGCGAAATATAATAGAATGACC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTTTCTTACTGATTTTTATAATTGGCGAAATATAATAGAATGACC  444

seq1  ATTGGCTAGACTAGTATCTCTCTCTCTCTGTCTCTGTCTCTGTCTCTCTC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTAGACTAGTATCTCTCTCTCTCTGTCTCTGTCTCTGTCTCTCTC  494

seq1  TCTCTCTCTCTCTCTCTTTCTCTCTCTCTTTTGGTGTCTGTTTTCAAGTT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTTTCTCTCTCTCTTTTGGTGTCTGTTTTCAAGTT  544

seq1  GCTTCAAGTTGATGGTCAAATCCACCAAAGTATAGAACTAGTGGACCTGT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAGTTGATGGTCAAATCCACCAAAGTATAGAACTAGTGGACCTGT  594

seq1  GACAGCAGCAGGGTCTGGGGTGGAGGAGGGGTTGGGATCTCACCGAGCTG  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGCAGGGTCTGGGGTGGAGGAGGGGTTGGGATCTCACCGAGCTG  644

seq1  GATACTTTACTAAGAGTGCTTACTTTCAAATGTCTCTCTCTCTCTCTCTC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTTACTAAGAGTGCTTACTTTCAAATGTCTCTCTCTCTCTCTCTC  694

seq1  TCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  744

seq1  TGTGCAGGGGTCATTACTCACAAACCAGCTTCCAAGGCATGGGATTTTCC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGGGGTCATTACTCACAAACCAGCTTCCAAGGCATGGGATTTTCC  794

seq1  ATGTAAATCCACACAGGACTTTTAAAGAGTCCTACCAAGAACCTCCACAC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATCCACACAGGACTTTTAAAGAGTCCTACCAAGAACCTCCACAC  844

seq1  ACAACTTAACAGGAGAAATTACCAGGGGCTAAGAAGCAAGTATTTTATTT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTAACAGGAGAAATTACCAGGGGCTAAGAAGCAAGTATTTTATTT  894

seq1  TATTTTTTTATTTTATTTTATATTGTTTTATTTTATTTTATGTTGAGATT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTATTTTATTTTATATTGTTTTATTTTATTTTATGTTGAGATT  944

seq1  TGAGCTGCAGTTTGCTTTGAGAACATAAGATCATTCAAGTCTTTTAAATT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCAGTTTGCTTTGAGAACATAAGATCATTCAAGTCTTTTAAATT  994

seq1  AGACAAACCTACAAAGGAAGTTAAAGCAAAACCAGATTTTAGATATAATC  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAACCTACAAAGGAAGTTAAAGCAAAACCAGATTTTAGATATAATC  1044

seq1  ATGCTTTCATAAGTCAATCTGAATATCATCTCACATTTTAAGTTGTTGTT  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCATAAGTCAATCTGAATATCATCTCACATTTTAAGTTGTTGTT  1094

seq1  GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTACTTCTGAGACACAAAT  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTACTTCTGAGACACAAAT  1144

seq1  ATTCTACAAATACCTTGAGTTCTTGGGAAAGAATTC  1168
      ||||||||||||||||||||||||||||||||||||
seq2  ATTCTACAAATACCTTGAGTTCTTGGGAAAGAATTC  1180