BAC Information

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BAC

Clone NameB6Ng01-154D22
Chromosome2 (Build37)
Map Location 65,351,315 - 65,404,715
singlet/doubletdoublet
Overlap geneScn3a
Upstream geneLOC620544, LOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik
Downstream geneScn2a1, A330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154D22.bB6Ng01-154D22.g
ACCDH949340DH949341
length1,095337
definitionDH949340|Mus musculus domesticus DNA, BAC clone: B6Ng01-154D22, 5' end.DH949341|Mus musculus domesticus DNA, BAC clone: B6Ng01-154D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,351,315 - 65,352,411)(65,404,379 - 65,404,715)
sequence
gaattcaaagctaaagctacgaattcaaagatagtcttagctgtagagtg
agaccctgcctaaaagtagacaatatcaaaacaagaaaataaccaagtat
tctactgggataaaatttgtgattgccactcatgttttatggcagtcact
attaatttccttgaagtattattccttattaagaggatgttatgcttgac
ttacagctttttatttgtttgtttttgctttaaattggttgtttgacatg
cccctcaaggcatggatgattgtgtatagtttttgagtaaattaatataa
tttgaagagtttgtaatttatggtacacaatatactagtagataaaatag
accccaaagtacaagggcatttatctcagttttcagtactatttactgtt
tgaattttgtaacccttaagttaaaaaaaaagtcaaaactactttgttgt
ctctgacctaaaagatatgctaaaactggtactgtgaattggatggttga
ctgtaattcccaccactaattaactaactttaatgttccctcttcaagag
cagttagattgtaattcttcgttcctatgtaacatgccatgacaatggag
actcctaagttgagtttttatgctaaagaaacataaaaagcgtcttgaga
cactcctttccagaactcatacatatgttataacattatctcctacagcc
aaagcagaagcttcataaagaagccaagtttatcagagtacttttttttt
ttttttttggttttttttttgttaattgagacagggtttttctgcatagc
cttggctgtcctggaactcactttggagaccaggctggcctctaactcat
aaattcgactgcctctgcctcccaagtgtttggaatagaggcgtgcgcca
cgccgcccggcttatgacattactttaaaggagaaagggaatctagcttt
ctcttaattccagtgacatattttgagaaactgggctacccttaaaacaa
gaaatcaatgtttggctctgtcacattgtaagatgcttatggcaattatc
tcgaagtttggctggaatcattttttcaaatcccgttctaggaca
ctgtatgtcccataccctcctgttttgttaccttttaacagccagaagct
tgagagctgggtaggtttctttccttcctggaacatttcatggttggttt
ttattatcagtactattactaccaatcaccaggaaaactcacttgagacc
aaatgagaataatttacattgtgtagagtctgtgcctgtcactgaaatgt
tttacaccacactcataatgttccattcagtgatcacactgctacattag
cagaagacctacaggcagtagtggaaagacaagtttttaagattacaaag
ctctctctctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_65351315_65352411
seq2: B6Ng01-154D22.b_39_1133

seq1  GAATTCAAAGCTAAAGCTACGAATTCAAAGATAGTCTTAGCTGTAGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCTAAAGCTACGAATTCAAAGATAGTCTTAGCTGTAGAGTG  50

seq1  AGACCCTGCCTAAAAGTAGACAATATCAAAACAAGAAAATAACCAAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGCCTAAAAGTAGACAATATCAAAACAAGAAAATAACCAAGTAT  100

seq1  TCTACTGGGATAAAATTTGTGATTGCCACTCATGTTTTATGGCAGTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGGGATAAAATTTGTGATTGCCACTCATGTTTTATGGCAGTCACT  150

seq1  ATTAATTTCCTTGAAGTATTATTCCTTATTAAGAGGATGTTATGCTTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTCCTTGAAGTATTATTCCTTATTAAGAGGATGTTATGCTTGAC  200

seq1  TTACAGCTTTTTATTTGTTTGTTTTTGCTTTAAATTGGTTGTTTGACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCTTTTTATTTGTTTGTTTTTGCTTTAAATTGGTTGTTTGACATG  250

seq1  CCCCTCAAGGCATGGATGATTGTGTATAGTTTTTGAGTAAATTAATATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCAAGGCATGGATGATTGTGTATAGTTTTTGAGTAAATTAATATAA  300

seq1  TTTGAAGAGTTTGTAATTTATGGTACACAATATACTAGTAGATAAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAGTTTGTAATTTATGGTACACAATATACTAGTAGATAAAATAG  350

seq1  ACCCCAAAGTACAAGGGCATTTATCTCAGTTTTCAGTACTATTTACTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAAGTACAAGGGCATTTATCTCAGTTTTCAGTACTATTTACTGTT  400

seq1  TGAATTTTGTAACCCTTAAGTTAAAAAAAAAGTCAAAACTACTTTGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTGTAACCCTTAAGTTAAAAAAAAAGTCAAAACTACTTTGTTGT  450

seq1  CTCTGACCTAAAAGATATGCTAAAACTGGTACTGTGAATTGGATGGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCTAAAAGATATGCTAAAACTGGTACTGTGAATTGGATGGTTGA  500

seq1  CTGTAATTCCCACCACTAATTAACTAACTTTAATGTTCCCTCTTCAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTCCCACCACTAATTAACTAACTTTAATGTTCCCTCTTCAAGAG  550

seq1  CAGTTAGATTGTAATTCTTCGTTCCTATGTAACATGCCATGACAATGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGATTGTAATTCTTCGTTCCTATGTAACATGCCATGACAATGGAG  600

seq1  ACTCCTAAGTTGAGTTTTTATGCTAAAGAAACATAAAAAGCGTCTTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTAAGTTGAGTTTTTATGCTAAAGAAACATAAAAAGCGTCTTGAGA  650

seq1  CACTCCTTTCCAGAACTCATACATATGTTATAACATTATCTCCTACAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTTTCCAGAACTCATACATATGTTATAACATTATCTCCTACAGCC  700

seq1  AAAGCAGAAGCTTCATAAAGAAGCCAAGTTTATCAGAGTAC-TTTTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAGCAGAAGCTTCATAAAGAAGCCAAGTTTATCAGAGTACTTTTTTTTT  750

seq1  TTTTTTTTGTTTTTTTTTTTGTTTTTTGAGACAGGGTTTCTCTGCATAGC  799
      ||||||||| |||||||||||||  |||||||||||||| ||||||||||
seq2  TTTTTTTTGGTTTTTTTTTTGTTAATTGAGACAGGGTTTTTCTGCATAGC  800

seq1  CCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAG  849
      | ||||||||||||||||||||||| |||||||||||||||| |||||| 
seq2  CTTGGCTGTCCTGGAACTCACTTTGGAGACCAGGCTGGCCTCTAACTCAT  850

seq1  AAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCA  899
      |||| || ||||||||||||||| |||| | ||| || ||||||||||||
seq2  AAATTCGACTGCCTCTGCCTCCCAAGTGTTTGGAATAGAGGCGTGCGCCA  900

seq1  CCACGCCCGGCTTATCAGAGTACTTTAAAAGAGAAAAGGGAATCGAGGCT  949
      |  |||||||||||| | | ||||||||| ||| |||||||||| | |||
seq2  CGCCGCCCGGCTTATGACATTACTTTAAAGGAG-AAAGGGAATCTA-GCT  948

seq1  TCCTATATAATCCCAGTGACATATCTTGAGAAACT-GGCTACACTTAAAA  998
      | || | |||| |||||||||||| |||||||||| |||||| |||||||
seq2  TTCTCT-TAATTCCAGTGACATATTTTGAGAAACTGGGCTACCCTTAAAA  997

seq1  CAAAAAATTCAATGATATGCTCT-CAAAATTGTAAGATGCTTATGACAAT  1047
      ||| ||| |||||| |  |||||   | ||||||||||||||||| ||||
seq2  CAAGAAA-TCAATGTTTGGCTCTGTCACATTGTAAGATGCTTATGGCAAT  1046

seq1  TATCTCAAAGTTTTGCCTGAATCAATTTTTCAAAATCCCTTTCTAAGACA  1097
      |||||| |||||| ||  |||||| |||||| ||||||| ||||| ||||
seq2  TATCTCGAAGTTTGGCTGGAATCATTTTTTC-AAATCCCGTTCTAGGACA  1095

seq1: chr2_65404379_65404715
seq2: B6Ng01-154D22.g_74_410 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTTGTAATCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTTGTAATCTTA  50

seq1  AAAACTTGTCTTTCCACTACTGCCTGTAGGTCTTCTGCTAATGTAGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGTCTTTCCACTACTGCCTGTAGGTCTTCTGCTAATGTAGCAGT  100

seq1  GTGATCACTGAATGGAACATTATGAGTGTGGTGTAAAACATTTCAGTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCACTGAATGGAACATTATGAGTGTGGTGTAAAACATTTCAGTGAC  150

seq1  AGGCACAGACTCTACACAATGTAAATTATTCTCATTTGGTCTCAAGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGACTCTACACAATGTAAATTATTCTCATTTGGTCTCAAGTGAG  200

seq1  TTTTCCTGGTGATTGGTAGTAATAGTACTGATAATAAAAACCAACCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGGTGATTGGTAGTAATAGTACTGATAATAAAAACCAACCATGA  250

seq1  AATGTTCCAGGAAGGAAAGAAACCTACCCAGCTCTCAAGCTTCTGGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCCAGGAAGGAAAGAAACCTACCCAGCTCTCAAGCTTCTGGCTGT  300

seq1  TAAAAGGTAACAAAACAGGAGGGTATGGGACATACAG  337
      |||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTAACAAAACAGGAGGGTATGGGACATACAG  337