BAC Information

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BAC

Clone NameB6Ng01-154E02
Chromosome2 (Build37)
Map Location 100,789,133 - 100,790,167
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668702, LOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154E02.bB6Ng01-154E02.g
ACCDH949348DH949349
length1,0301,145
definitionDH949348|Mus musculus domesticus DNA, BAC clone: B6Ng01-154E02, 5' end.DH949349|Mus musculus domesticus DNA, BAC clone: B6Ng01-154E02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatgtctgacacaatcacccctaggtggaactactttggttcct
tactcatttaagttgattttgtcataagcatatgaggatgtgaagatacc
aaaaggtcaggtaagaaccaggtaaacagaaccaggatctgggaaatgta
aagcagaaacagttgataaaaatggagagaaatataaagcaaacaggtag
ttcacttaagcgaaattcactccagacagtgttagaagaaacttgtcccc
agggtagttaccttgctctgtacgacaagtatgtgtgctttacacaatag
ctttgcttctaagttcttgggaaataagtactgcaattcacactcggatc
atttgatatgtatgcttttttaacaaatattattattaaagattcaaaat
atagcatatctataaagaaattcataagctgtgtcaacatagttaggatt
ccatatttgatgccctttataataaaggaatatcctacattgtagaatgc
aaaaaaaaaacccatattgaagaaatattgtgtctataccaggaaaagta
aggtgaaagttttcataatcacactggtgttacctgtgttatctctgaca
aaaaaaaatgagttaagccagaaattatgcagaagggtctctccatataa
tagtccaacagtagctgtcactatgctggtaccatagagccatcagaacc
ttgtaaaaattgcattagatgtctacaagcatatcagctgagtaactgtt
aaatcctgtgctcaggccaccacagcagtgaatcactccagccaaatcaa
gctgatggagcaggactcattctttccttccaaaacttccacttgatcaa
ggcaagacagttcaggctttaaaaaatccagcttccagaagttgaggtat
gagtttggtgccggcctggaaaaatagtgagaaactctctgaaataaata
atccaaattctgtggctccccctttctgagcccagtcctatccatgacgt
gcatgtcttcatgtggatcagatttcacca
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgcccgggcctagcaaac
acagaagttgatgctcacagtcagctaatggatggatcacaggctccaat
gagagctagagaaagtaccaaagagctaaagggatctcaccctataggtg
gaacaacattatgaactaaccagtacccctgagctcttgactcttgctgc
atattgtttcaagatggctagtcggcatcctggagaaagtcattgacatg
caacttgtgtgcctggtacagggaacccatggccaaatgtgtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100789133_100790167
seq2: B6Ng01-154E02.b_48_1077

seq1  GAATTCTATGTCTGACACAATCACCCCTAGGTGGAACTACTTTGGTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTCTGACACAATCACCCCTAGGTGGAACTACTTTGGTTCCT  50

seq1  TACTCATTTAAGTTGATTTTGTCATAAGCATATGAGGATGTGAAGATACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATTTAAGTTGATTTTGTCATAAGCATATGAGGATGTGAAGATACC  100

seq1  AAAAGGTCAGGTAAGAACCAGGTAAACAGAACCAGGATCTGGGAAATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCAGGTAAGAACCAGGTAAACAGAACCAGGATCTGGGAAATGTA  150

seq1  AAGCAGAAACAGTTGATAAAAATGGAGAGAAATATAAAGCAAACAGGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAACAGTTGATAAAAATGGAGAGAAATATAAAGCAAACAGGTAG  200

seq1  TTCACTTAAGCGAAATTCACTCCAGACAGTGTTAGAAGAAACTTGTCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTAAGCGAAATTCACTCCAGACAGTGTTAGAAGAAACTTGTCCCC  250

seq1  AGGGTAGTTACCTTGCTCTGTACGACAAGTATGTGTGCTTTACACAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGTTACCTTGCTCTGTACGACAAGTATGTGTGCTTTACACAATAG  300

seq1  CTTTGCTTCTAAGTTCTTGGGAAATAAGTACTGCAATTCACACTCGGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTCTAAGTTCTTGGGAAATAAGTACTGCAATTCACACTCGGATC  350

seq1  ATTTGATATGTATGCTTTTTTAACAAATATTATTATTAAAGATTCAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATATGTATGCTTTTTTAACAAATATTATTATTAAAGATTCAAAAT  400

seq1  ATAGCATATCTATAAAGAAATTCATAAGCTGTGTCAACATAGTTAGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATATCTATAAAGAAATTCATAAGCTGTGTCAACATAGTTAGGATT  450

seq1  CCATATTTGATGCCCTTTATAATAAAGGAATATCCTACATTGTAGAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTGATGCCCTTTATAATAAAGGAATATCCTACATTGTAGAATGC  500

seq1  AAAAAAAAAACCCATATTGAAGAAATATTGTGTCTATACCAGGAAAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACCCATATTGAAGAAATATTGTGTCTATACCAGGAAAAGTA  550

seq1  AGGTGAAAGTTTTCATAATCACACTGGTGTTACCTGTGTTATCTCTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAAGTTTTCATAATCACACTGGTGTTACCTGTGTTATCTCTGACA  600

seq1  AAAAAAAATGAGTTAAGCCAGAAATTATGCAGAAGGGTCTCTCCATATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATGAGTTAAGCCAGAAATTATGCAGAAGGGTCTCTCCATATAA  650

seq1  TAGTCCAACAGTAGCTGTCACTATGCTGGTACCATAGAGCCATCAGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCAACAGTAGCTGTCACTATGCTGGTACCATAGAGCCATCAGAACC  700

seq1  TTGTAAAAATTGCATTAGATGTCTACAAGCATATCAGCTGAGTAACTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAATTGCATTAGATGTCTACAAGCATATCAGCTGAGTAACTGTT  750

seq1  AAATCCTGTGCTCAGGCCACCACAGCAGTGAATCACTCCAGCCAAATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTGTGCTCAGGCCACCACAGCAGTGAATCACTCCAGCCAAATCAA  800

seq1  GCTGATGGAGCAGGACTCATTCTTTCCTTCCAAAACTTCCACTTGATCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGGAGCAGGACTCATTCTTTCCTTCCAAAACTTCCACTTGATCAA  850

seq1  GGCAAGACAGTTCAGGCTTTAAAAAATCCAGCTTCCAGAAGTTGAGGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGACAGTTCAGGCTTTAAAAAATCCAGCTTCCAGAAGTTGAGGTAT  900

seq1  GAGTTTGGTGCCGGCCTGGAAAAATAGTGAGAAACTCTCTGAAAATAAAT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGTTTGGTGCCGGCCTGGAAAAATAGTGAGAAACTCTCTG-AAATAAAT  949

seq1  AATCCAAATTCCTGTGGCCTCCCCCTTTCTGAGCCCAGTCCTATCCAATG  1000
      |||||||||| |||||| |||||||||||||||||||||||||||| |||
seq2  AATCCAAATT-CTGTGG-CTCCCCCTTTCTGAGCCCAGTCCTATCC-ATG  996

seq1  ACGTGCATGTTCTTCATTGTGATCAGATTTCACCA  1035
      ||||||||| |||||||   |||||||||||||||
seq2  ACGTGCATG-TCTTCATGTGGATCAGATTTCACCA  1030