BAC Information

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BAC

Clone NameB6Ng01-155G11
Chromosome2 (Build37)
Map Location 120,887,156 - 121,042,326
singlet/doubletdoublet
Overlap geneTgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1
Upstream geneSpnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2
Downstream geneMtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155G11.bB6Ng01-155G11.g
ACCDH950195DH950196
length1,1691,075
definitionDH950195|Mus musculus domesticus DNA, BAC clone: B6Ng01-155G11, 5' end.DH950196|Mus musculus domesticus DNA, BAC clone: B6Ng01-155G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,041,130 - 121,042,326)(120,887,156 - 120,888,161)
sequence
gaattctctagtgacccaggctggcctcaaactcctagagatctacttgc
ttttgcctcctgagtgctgggattaaggtgtgcaccatcacacctcacag
atcttttttatgaagctaccaggatttattcataaatgccctaccccagt
gaccttgttagatcttaattacttcccaaaggcaactctaaaatactgta
cacaattggatctagcttttatccttttaatatcacaatggggattattt
tatttttattatgttttgagacagttttgctttatagctttagttgttct
tgaatccatgctctccagcctcctgagtactaggattatagacattatag
accaccacactgccttagaggaataaactgcattcaaaccatgacatgtg
gtgtctttgtcattttcagggcgaatttgctccattttccaagtgctcaa
gaagaagacaaagaaagaccagatgttaccccaaaactcaggcagagtga
acagcctgtgaagcctgttgggcctgtcatggacgatgctgctcctgagg
actcagcttctcctgtttcgcagcagagggcctcacaggagcagagggcc
tcacaggagcccttcagtcctgcagaggacgtgatggaaacagacctgct
ggaaggactggctgctaaccaggacagacctagtaagatgttgatggaca
ggcccacccagagtaacatcgggatccagaccgtggaccattccctgtgc
gccccagaaactgtctcggcagcaactcagactgtgaagagtgtgtgtga
gcaggggaccagtacagcggagcagaactctgggaaacaagatgccactg
tgcagactgagagggggagtggagagaaacctgccagtgctcccgtggac
gacacagagtccctccacagccaggtgggggcagctgggcgctcggcccg
ctacagactgcattctctgaaggtctcagttcagtgctctcaacatgtat
gtttttagtggtgtgcgtgcccatgcacttggggcttgggtggtgaagtc
agaagacactcagtgttagtcctcaggtagtccattttttttttttttga
tgttgatgttggacaggacttcatggtctgaaacttccccgatggccagc
atcggacctctgacattgg
gaattcctaaattgatacaagtaatctcaagcctactatagaatgaaagc
tgcaaatagagctctgtaagccttcgtgtgttatgggctaattgcactag
gaaaagaaagcaggcttggaacaaatttatgatggaggaaaacattcctt
ctaggataggaatgttactatctggtaatcaaaggtcataaactgggagt
gggcaatttatcataggttcaaagacagaagataaacgatggactagttt
atctatacaaggcttcaaaataatgagacacaaggcagatgatttgtctc
ttgacaaaactgtgctaacttatgacacaagaattattgttttaaactta
taatgaacttatggagctaaatggtgggccatctgcagataatgaatgtt
tagtcagatactagtctaatttttaaagacatgtaaacaattctgcttgt
taagccttagtaatgcatgacatgaattactgccttaaacttactatgaa
cttaaggaatataaaactgcttttaaaaccatgtgatcaactgtcctgag
aaggtataacaactaagaactgtaataaagagtggtggagcccctttctt
tcagattcatccagcatgtgtattgtctgtgtgcctgattttctttgttt
cttttcttttcctttctttttctctctggctcataaagatttaatgaact
ctgagtttcttgcccagccagcaaggggttcttgagtcaaagagaaaaaa
aaaaaaacccaagtaactaactccccacccacccccatccccaatcagca
ggagttaattgccagaggccaacatcttttggtcccaaaaagcaagaaag
agttaaattgccagaagctatcagctttgaccctgatctctgacaccacc
ctccctgcttcccccaggcaccctaatgccaagcaggaccttggcaaaca
cataattcatgaccagtgtctgtcaaattacaaagcaatagaagatacag
cctatactaggaagagaatggatcatagagagaatccagaaacatagatg
atgggattagcagcccagtctaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_121041130_121042326
seq2: B6Ng01-155G11.b_48_1216 (reverse)

seq1  CCAAAGTCAGAGGTCAGCTAGCCTGGCCTATCTGGGGAAGTTTCTGACCA  50
      |||| ||||||||||  | |  |||||| ||| ||||||||||| |||||
seq2  CCAATGTCAGAGGTC--CGATGCTGGCC-ATC-GGGGAAGTTTCAGACCA  46

seq1  ATGAGAGGTCCTGTTTCAAACAAACAAACAAACAAAAAAAAAAAAAAAAA  100
          || |||||||      | ||| | |||   |  |||||||||||||
seq2  ---TGAAGTCCTGT------CCAAC-ATCAA--CATCAAAAAAAAAAAAA  84

seq1  ATGGAAACTACCTGAGGACTAACACCTGAAGTTGTCTTCTGACTTTCACA  150
      ||||  |||||||||||||||||| ||||   |||||||||||||   ||
seq2  ATGG--ACTACCTGAGGACTAACA-CTGA--GTGTCTTCTGACTTCACCA  129

seq1  CACAAGCCCCAAGTGGCATGGGCACGCACACCACTAAAAACATACAATTG  200
      | |||||||||||| |||||||||||||||||||||||||||||||  ||
seq2  CCCAAGCCCCAAGT-GCATGGGCACGCACACCACTAAAAACATACA--TG  176

seq1  TTTGAGAAGCACTGAACTGAGACCTTCAGAGAATGCAGTCTGTAGCGGGC  250
       ||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  -TTGAG-AGCACTGAACTGAGACCTTCAGAGAATGCAGTCTGTAGCGGG-  223

seq1  CCGAGGCGCCCAGCTGCCCCCACCTGGCTGTGGAGGGACTCTGTGTCGTC  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGA-GCGCCCAGCTGCCCCCACCTGGCTGTGGAGGGACTCTGTGTCGTC  272

seq1  CACGGGAGCACTGGCAGGTTTCTCTCCACTCCCCCTCTCAGTCTGCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGAGCACTGGCAGGTTTCTCTCCACTCCCCCTCTCAGTCTGCACAG  322

seq1  TGGCATCTTGTTTCCCAGAGTTCTGCTCCGCTGTACTGGTCCCCTGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTTGTTTCCCAGAGTTCTGCTCCGCTGTACTGGTCCCCTGCTCA  372

seq1  CACACACTCTTCACAGTCTGAGTTGCTGCCGAGACAGTTTCTGGGGCGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCTTCACAGTCTGAGTTGCTGCCGAGACAGTTTCTGGGGCGCA  422

seq1  CAGGGAATGGTCCACGGTCTGGATCCCGATGTTACTCTGGGTGGGCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAATGGTCCACGGTCTGGATCCCGATGTTACTCTGGGTGGGCCTGT  472

seq1  CCATCAACATCTTACTAGGTCTGTCCTGGTTAGCAGCCAGTCCTTCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAACATCTTACTAGGTCTGTCCTGGTTAGCAGCCAGTCCTTCCAGC  522

seq1  AGGTCTGTTTCCATCACGTCCTCTGCAGGACTGAAGGGCTCCTGTGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGTTTCCATCACGTCCTCTGCAGGACTGAAGGGCTCCTGTGAGGC  572

seq1  CCTCTGCTCCTGTGAGGCCCTCTGCTGCGAAACAGGAGAAGCTGAGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTCCTGTGAGGCCCTCTGCTGCGAAACAGGAGAAGCTGAGTCCT  622

seq1  CAGGAGCAGCATCGTCCATGACAGGCCCAACAGGCTTCACAGGCTGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCAGCATCGTCCATGACAGGCCCAACAGGCTTCACAGGCTGTTCA  672

seq1  CTCTGCCTGAGTTTTGGGGTAACATCTGGTCTTTCTTTGTCTTCTTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTGAGTTTTGGGGTAACATCTGGTCTTTCTTTGTCTTCTTCTTG  722

seq1  AGCACTTGGAAAATGGAGCAAATTCGCCCTGAAAATGACAAAGACACCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGGAAAATGGAGCAAATTCGCCCTGAAAATGACAAAGACACCAC  772

seq1  ATGTCATGGTTTGAATGCAGTTTATTCCTCTAAGGCAGTGTGGTGGTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATGGTTTGAATGCAGTTTATTCCTCTAAGGCAGTGTGGTGGTCTA  822

seq1  TAATGTCTATAATCCTAGTACTCAGGAGGCTGGAGAGCATGGATTCAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCTATAATCCTAGTACTCAGGAGGCTGGAGAGCATGGATTCAAGA  872

seq1  ACAACTAAAGCTATAAAGCAAAACTGTCTCAAAACATAATAAAAATAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAAAGCTATAAAGCAAAACTGTCTCAAAACATAATAAAAATAAAA  922

seq1  TAATCCCCATTGTGATATTAAAAGGATAAAAGCTAGATCCAATTGTGTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCCATTGTGATATTAAAAGGATAAAAGCTAGATCCAATTGTGTAC  972

seq1  AGTATTTTAGAGTTGCCTTTGGGAAGTAATTAAGATCTAACAAGGTCACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTAGAGTTGCCTTTGGGAAGTAATTAAGATCTAACAAGGTCACT  1022

seq1  GGGGTAGGGCATTTATGAATAAATCCTGGTAGCTTCATAAAAAAGATCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGGGCATTTATGAATAAATCCTGGTAGCTTCATAAAAAAGATCTG  1072

seq1  TGAGGTGTGATGGTGCACACCTTAATCCCAGCACTCAGGAGGCAAAAGCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGTGATGGTGCACACCTTAATCCCAGCACTCAGGAGGCAAAAGCA  1122

seq1  AGTAGATCTCTAGGAGTTTGAGGCCAGCCTGGGTCACTAGAGAATTC  1197
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATCTCTAGGAGTTTGAGGCCAGCCTGGGTCACTAGAGAATTC  1169

seq1: chr2_120887156_120888161
seq2: B6Ng01-155G11.g_149_1141

seq1  ATGGGCTAATTGCACTAGGAAAAGAAAGCAGGCTTGGAACAAATTTATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTAATTGCACTAGGAAAAGAAAGCAGGCTTGGAACAAATTTATGA  50

seq1  TGGAGGAAAACATTCCTTCTAGGATAGGAATGTTACTATCTGGTAATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAAACATTCCTTCTAGGATAGGAATGTTACTATCTGGTAATCAA  100

seq1  AGGTCATAAACTGGGAGTGGGCAATTTATCATAGGTTCAAAGACAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATAAACTGGGAGTGGGCAATTTATCATAGGTTCAAAGACAGAAGA  150

seq1  TAAACGATGGACTAGTTTATCTATACAAGGCTTCAAAATAATGAGACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGATGGACTAGTTTATCTATACAAGGCTTCAAAATAATGAGACACA  200

seq1  AGGCAGATGATTTGTCTCTTGACAAAACTGTGCTAACTTATGACACAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATGATTTGTCTCTTGACAAAACTGTGCTAACTTATGACACAAGA  250

seq1  ATTATTGTTTTAAACTTATAATGAACTTATGGAGCTAAATGGTGGGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTTTTAAACTTATAATGAACTTATGGAGCTAAATGGTGGGCCAT  300

seq1  CTGCAGATAATGAATGTTTAGTCAGATACTAGTCTAATTTTTAAAGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGATAATGAATGTTTAGTCAGATACTAGTCTAATTTTTAAAGACAT  350

seq1  GTAAACAATTCTGCTTGTTAAGCCTTAGTAATGCATGACATGAATTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAATTCTGCTTGTTAAGCCTTAGTAATGCATGACATGAATTACTG  400

seq1  CCTTAAACTTACTATGAACTTAAGGAATATAAAACTGCTTTTAAAACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAACTTACTATGAACTTAAGGAATATAAAACTGCTTTTAAAACCAT  450

seq1  GTGATCAACTGTCCTGAGAAGGTATAACAACTAAGAACTGTAATAAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAACTGTCCTGAGAAGGTATAACAACTAAGAACTGTAATAAAGAG  500

seq1  TGGTGGAGCCCCTTTCTTTCAGATTCATCCAGCATGTGTATTGTCTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAGCCCCTTTCTTTCAGATTCATCCAGCATGTGTATTGTCTGTGT  550

seq1  GCCTGATTTTCTTTGTTTCTTTTCTTTTCCTTTCTTTTTCTCTCTGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATTTTCTTTGTTTCTTTTCTTTTCCTTTCTTTTTCTCTCTGGCTC  600

seq1  ATAAAGATTTAATGAACTCTGAGTTTCTTGCCCAGCCAGCAAGGGGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATTTAATGAACTCTGAGTTTCTTGCCCAGCCAGCAAGGGGTTCT  650

seq1  TGAGTCAAAGAGAAAAAAAAAAAAACCCAAGTAACTAACTCCCCACCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAAAGAGAAAAAAAAAAAAACCCAAGTAACTAACTCCCCACCCAC  700

seq1  CCCCATCCCCAATCAGCAGGAGTTAATTGCCAGAGGCCAACATCTTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCCCCAATCAGCAGGAGTTAATTGCCAGAGGCCAACATCTTTTGG  750

seq1  TCCCAAAAAGCAAGAAAGAGTTAAATTGCCAGAAGCTATCAGCTTTGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAAAGCAAGAAAGAGTTAAATTGCCAGAAGCTATCAGCTTTGACC  800

seq1  CTGATCTCTGACACCACCCTCCCTGCTTCCCCCCAGGCACCCTAATGCCA  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGATCTCTGACACCACCCTCCCTGCTT-CCCCCAGGCACCCTAATGCCA  849

seq1  AGCAGGACCTTGGCAAACAACATAATTCAATGACCAGTGTCTGTTCAAAA  900
      |||||||||||||||||| ||||||||| |||||||||||||||   |||
seq2  AGCAGGACCTTGGCAAAC-ACATAATTC-ATGACCAGTGTCTGT--CAAA  895

seq1  TTACAAAGCAAATAGAAAGATACAGCCTATAACTAGGAAGAGAATGGATC  950
      ||||||||| ||||| |||||||||||||| |||||||||||||||||||
seq2  TTACAAAGC-AATAG-AAGATACAGCCTAT-ACTAGGAAGAGAATGGATC  942

seq1  AATAGAGAGAAATCCAGAAACAATAGATGATGGGATTAGCAGCCAAAGGT  1000
       |||||||| ||||||||||| |||||||||||||||||||||| |  ||
seq2  -ATAGAGAG-AATCCAGAAAC-ATAGATGATGGGATTAGCAGCCCA--GT  987

seq1  CTAAAA  1006
      ||||||
seq2  CTAAAA  993