BAC Information

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BAC

Clone NameB6Ng01-155J23
Chromosome2 (Build37)
Map Location 43,835,183 - 43,956,063
singlet/doubletdoublet
Overlap geneArhgap15
Upstream geneLOC100041228, LOC100041245, Kynu
Downstream geneGtdc1, Zeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155J23.bB6Ng01-155J23.g
ACCDH950354DH950355
length1,1361,124
definitionDH950354|Mus musculus domesticus DNA, BAC clone: B6Ng01-155J23, 5' end.DH950355|Mus musculus domesticus DNA, BAC clone: B6Ng01-155J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,835,183 - 43,836,324)(43,954,908 - 43,956,063)
sequence
gaattccatgtgtatttaagtcaaagtcgaattttatgtctcatagttaa
ttcatgcagagtaagtatgcaaattctgacagtcgtccaatgtacactac
ttctctggaacactgctctactgtgatagccatatcatgttccgagtgga
tctttgtcatttggttatgttttaactcactgaggaatttccaaacggaa
aagtgtactctatcatttacgagtttcgaaaactattattcctaaatgtt
aatgaaacaaaaatcaaacagtgttaagcttgctctttcctacctctgca
gtcatagacttgaggaattgtttgacgtgtctcattacagttaatactaa
gaagtcattcaggttccaaaaagtggtaaaatgcctacgtgtggatgatt
ccctgtctaagaaaatgagcagtgtattatagtggccagtttgtgtgcat
agattctcttactccatcttatctccagggaattctaaatcaggtcattg
taagttattattttaaaattctgataatgacagatttttcttttccttta
ctatctatcactttaattttgatcttttagaaaacactggaaactccaga
ttcttttcataaggatgttttctgtattgtcttctaaatgcagaaatgta
gaaagtaaagtagaaaacattctagtatatacttctgtaagaattgctaa
ctcctatgtttacatggagatttaagaaaatagattatttaaacttccca
agttagaaaagtgagaggataactttttttcttcaaattatggcataagg
taataaaactgtaaaactctgtgcatgttttcatgcaaaagaaatgaggt
tcccaggagggatgaaataatacttcatgcacacaccatggaaagactct
gatgaccttccaagtttttggactctccaacgtgacttataaaggggagg
ggcgggtgataaatggtcgacagggcttggtccactatgcagagcaattt
catttgtttgactttgcttcagttattcggaaggtactcagaacacctgt
tcatctaagtgtactcaggtcaacactaggaaagcagtcacgaaaggggt
catgttgtactccttcgaaacttagatcgatgcaga
gaattcacttctactttgaacatagtgactctcttgcttttccctgagca
tatcctgcctgtaccctctgtgcctgctgctcgctgtaaccatgtcatca
ttcgtgagacacagagccagggctcacactccctccagtcccaatccaag
caccatttctcacaggttccctctttacttaggactatgagtttcactca
ctctggctagacactcttgcttcccctccttttatttttcagagttaaac
acaatttagtcaatatgtattgcacttactaatatgtcttcccaaggcta
aaactgtagttgcaccaagagacatttttgttcattttgcattattattt
tctgattttctgggaatccagatcaaggccttgcacaggctgagaaggtg
ccccctagttacagtttaatttttagggcatattattttagtgttacaaa
agatttgggcagatgagtggagagtacacattgcataaattggagaatat
tctgaattccattttttagaaaaataaaacctcttaattcccttttaaaa
gtaccttaacatttataggtaaaatcatctaagaaaatagacttcacttg
atagatcataaggagaaaatgatgattaaaaattatggctaggtgacagt
gtgagtttatatccacaaaatgtctgagagaaagacaaactcctctcaga
acccggaacatctagaagtagttgtggtacccattccttatttgcgtatg
catcaatatgagtacaatataattttatcttttatctcatttacagaata
atagaatttaatttttaaaaattcaattaaatacataaaggatgcttaca
cctacagagaagtcatttataaagtcatttattgaagtaaaaaatcatag
tttttttggacaaatagtgataataagtacaatattcaaatagtatagat
ggaactctctgtatcattaatgagttaaagagagagtacagagaagagag
gagagaaagaaatatactagagagagcagctgttgtgcgagtacagaccc
agacacatgtccacagaaatatggtgttagcctcatagtattaaaaattc
tatggcacattaaagtttaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_43835183_43836324
seq2: B6Ng01-155J23.b_44_1179

seq1  GAATTCCATGTGTATTTAAGTCAAAGTCGAATTTTATGTCTCATAGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTGTATTTAAGTCAAAGTCGAATTTTATGTCTCATAGTTAA  50

seq1  TTCATGCAGAGTAAGTATGCAAATTCTGACAGTCGTCCAATGTACACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCAGAGTAAGTATGCAAATTCTGACAGTCGTCCAATGTACACTAC  100

seq1  TTCTCTGGAACACTGCTCTACTGTGATAGCCATATCATGTTCCGAGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGAACACTGCTCTACTGTGATAGCCATATCATGTTCCGAGTGGA  150

seq1  TCTTTGTCATTTGGTTATGTTTTAACTCACTGAGGAATTTCCAAACGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCATTTGGTTATGTTTTAACTCACTGAGGAATTTCCAAACGGAA  200

seq1  AAGTGTACTCTATCATTTACGAGTTTCGAAAACTATTATTCCTAAATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTACTCTATCATTTACGAGTTTCGAAAACTATTATTCCTAAATGTT  250

seq1  AATGAAACAAAAATCAAACAGTGTTAAGCTTGCTCTTTCCTACCTCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACAAAAATCAAACAGTGTTAAGCTTGCTCTTTCCTACCTCTGCA  300

seq1  GTCATAGACTTGAGGAATTGTTTGACGTGTCTCATTACAGTTAATACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGACTTGAGGAATTGTTTGACGTGTCTCATTACAGTTAATACTAA  350

seq1  GAAGTCATTCAGGTTCCAAAAAGTGGTAAAATGCCTACGTGTGGATGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCATTCAGGTTCCAAAAAGTGGTAAAATGCCTACGTGTGGATGATT  400

seq1  CCCTGTCTAAGAAAATGAGCAGTGTATTATAGTGGCCAGTTTGTGTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTAAGAAAATGAGCAGTGTATTATAGTGGCCAGTTTGTGTGCAT  450

seq1  AGATTCTCTTACTCCATCTTATCTCCAGGGAATTCTAAATCAGGTCATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCTTACTCCATCTTATCTCCAGGGAATTCTAAATCAGGTCATTG  500

seq1  TAAGTTATTATTTTAAAATTCTGATAATGACAGATTTTTCTTTTCCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTATTATTTTAAAATTCTGATAATGACAGATTTTTCTTTTCCTTTA  550

seq1  CTATCTATCACTTTAATTTTGATCTTTTAGAAAACACTGGAAACTCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCACTTTAATTTTGATCTTTTAGAAAACACTGGAAACTCCAGA  600

seq1  TTCTTTTCATAAGGATGTTTTCTGTATTGTCTTCTAAATGCAGAAATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCATAAGGATGTTTTCTGTATTGTCTTCTAAATGCAGAAATGTA  650

seq1  GAAAGTAAAGTAGAAAACATTCTAGTATATACTTCTGTAAGAATTGCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAAAGTAGAAAACATTCTAGTATATACTTCTGTAAGAATTGCTAA  700

seq1  CTCCTATGTTTACATGGAGATTTAAGAAAATAGATTATTTAAACTTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATGTTTACATGGAGATTTAAGAAAATAGATTATTTAAACTTCCCA  750

seq1  AGTTAGAAAAGTGAGAGGATAACTTTTTTTCTTCAAATTATGGCATAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAAAGTGAGAGGATAACTTTTTTTCTTCAAATTATGGCATAAGG  800

seq1  TAATAAAACTGTAAAACTCTGTGCATGTTTTCATGCAAAAGAAATGAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAACTGTAAAACTCTGTGCATGTTTTCATGCAAAAGAAATGAGGT  850

seq1  TCCCAGGAGGGATGAAATAATACTTCATGCACACACCATGGAAAGACTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGAGGGATGAAATAATACTTCATGCACACACCATGGAAAGACTCT  900

seq1  GATGACCTTCCAAGTTTTTGGACTCTCCAACGTGACTTATAAAGGGGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCTTCCAAGTTTTTGGACTCTCCAACGTGACTTATAAAGGGGAGG  950

seq1  GGCGGGTGATAAATGGTCGACAAGGGCTTGGTCCACTATGCAGAGCAATT  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCGGGTGATAAATGGTCGAC-AGGGCTTGGTCCACTATGCAGAGCAATT  999

seq1  TCATTTGTTTGACTTTGCTTCAAGTTATTCGGAAGGTACTCAGAAACACC  1050
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  TCATTTGTTTGACTTTGCTTC-AGTTATTCGGAAGGTACTCAG-AACACC  1047

seq1  TGTTCATCTAAGTGTACCCA-GTCAACACTTAGGAAAGCCAGTCAACGAA  1099
      ||||||||||||||||| || |||||||| |||||||| ||||| |||||
seq2  TGTTCATCTAAGTGTACTCAGGTCAACAC-TAGGAAAG-CAGTC-ACGAA  1094

seq1  AGGGGTCATGTTGTACTCCTCAGAAACTTAGATCGATGGCAGA  1142
      ||||||||||||||||||||  ||||||||||||||| |||||
seq2  AGGGGTCATGTTGTACTCCTTCGAAACTTAGATCGAT-GCAGA  1136

seq1: chr2_43954908_43956063
seq2: B6Ng01-155J23.g_67_1190 (reverse)

seq1  TTTATTAAACTTTTTAATGTGGCCACTAGGATATTTTAAATTACTTATGA  50
      ||||||||||  |||||||| |||| ||| || ||||||  ||| |||||
seq2  TTTATTAAAC--TTTAATGT-GCCA-TAGAAT-TTTTAA--TAC-TATGA  42

seq1  GGCTAACACCATATTTCCTGTGGACATTGGTGGTCTTGGGGTTCTGTAAC  100
      |||||||||||||||| ||||||||||  || ||||   || ||||||  
seq2  GGCTAACACCATATTT-CTGTGGACAT--GT-GTCT---GGGTCTGTA--  83

seq1  CTCTGCCACAAACCAAGCTGCTCTCTCTAAGTATTAATTTCTGTCTCTCC  150
        ||  |||||    ||||||||||||| |||||  |||||| |||||||
seq2  --CTCGCACAA---CAGCTGCTCTCTCT-AGTAT--ATTTCTTTCTCTCC  125

seq1  TCTCTTCTCCTGTACCTCTCCTTCTTTAACTCATTAATGATACAGAGAGT  200
      |||||||| ||||| |||||  ||||||||||||||||||||||||||||
seq2  TCTCTTCT-CTGTA-CTCTC--TCTTTAACTCATTAATGATACAGAGAGT  171

seq1  TCCATCTATACTTATTTGAATATTTGTACTTATTATCACTATTTGTCCAA  250
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  TCCATCTATAC-TATTTGAATA-TTGTACTTATTATCACTATTTGTCCAA  219

seq1  AAAAACTATGATTTTTTTACTTCAATAAATGACTTTATAAATGACTTCTC  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTATGA-TTTTTTACTTCAATAAATGACTTTATAAATGACTTCTC  268

seq1  TGTAGGTGTAAGCATCCTTTATGTATTTAATTGAATTTTTAAAAATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGTAAGCATCCTTTATGTATTTAATTGAATTTTTAAAAATTAAA  318

seq1  TTCTATTATTCTGTAAATGAGATAAAAGATAAAATTATATTGTACTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTATTCTGTAAATGAGATAAAAGATAAAATTATATTGTACTCATA  368

seq1  TTGATGCATACGCAAATAAGGAATGGGTACCACAACTACTTCTAGATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCATACGCAAATAAGGAATGGGTACCACAACTACTTCTAGATGTT  418

seq1  CCGGGTTCTGAGAGGAGTTTGTCTTTCTCTCAGACATTTTGTGGATATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTTCTGAGAGGAGTTTGTCTTTCTCTCAGACATTTTGTGGATATAA  468

seq1  ACTCACACTGTCACCTAGCCATAATTTTTAATCATCATTTTCTCCTTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACTGTCACCTAGCCATAATTTTTAATCATCATTTTCTCCTTATG  518

seq1  ATCTATCAAGTGAAGTCTATTTTCTTAGATGATTTTACCTATAAATGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCAAGTGAAGTCTATTTTCTTAGATGATTTTACCTATAAATGTTA  568

seq1  AGGTACTTTTAAAAGGGAATTAAGAGGTTTTATTTTTCTAAAAAATGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTTTTAAAAGGGAATTAAGAGGTTTTATTTTTCTAAAAAATGGAA  618

seq1  TTCAGAATATTCTCCAATTTATGCAATGTGTACTCTCCACTCATCTGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATATTCTCCAATTTATGCAATGTGTACTCTCCACTCATCTGCCC  668

seq1  AAATCTTTTGTAACACTAAAATAATATGCCCTAAAAATTAAACTGTAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTGTAACACTAAAATAATATGCCCTAAAAATTAAACTGTAACT  718

seq1  AGGGGGCACCTTCTCAGCCTGTGCAAGGCCTTGATCTGGATTCCCAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCACCTTCTCAGCCTGTGCAAGGCCTTGATCTGGATTCCCAGAAA  768

seq1  ATCAGAAAATAATAATGCAAAATGAACAAAAATGTCTCTTGGTGCAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAATAATAATGCAAAATGAACAAAAATGTCTCTTGGTGCAACTA  818

seq1  CAGTTTTAGCCTTGGGAAGACATATTAGTAAGTGCAATACATATTGACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTAGCCTTGGGAAGACATATTAGTAAGTGCAATACATATTGACTA  868

seq1  AATTGTGTTTAACTCTGAAAAATAAAAGGAGGGGAAGCAAGAGTGTCTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGTTTAACTCTGAAAAATAAAAGGAGGGGAAGCAAGAGTGTCTAG  918

seq1  CCAGAGTGAGTGAAACTCATAGTCCTAAGTAAAGAGGGAACCTGTGAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGAGTGAAACTCATAGTCCTAAGTAAAGAGGGAACCTGTGAGAA  968

seq1  ATGGTGCTTGGATTGGGACTGGAGGGAGTGTGAGCCCTGGCTCTGTGTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCTTGGATTGGGACTGGAGGGAGTGTGAGCCCTGGCTCTGTGTCT  1018

seq1  CACGAATGATGACATGGTTACAGCGAGCAGCAGGCACAGAGGGTACAGGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAATGATGACATGGTTACAGCGAGCAGCAGGCACAGAGGGTACAGGC  1068

seq1  AGGATATGCTCAGGGAAAAGCAAGAGAGTCACTATGTTCAAAGTAGAAGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGCTCAGGGAAAAGCAAGAGAGTCACTATGTTCAAAGTAGAAGT  1118

seq1  GAATTC  1156
      ||||||
seq2  GAATTC  1124