BAC Information

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BAC

Clone NameB6Ng01-155N10
Chromosome2 (Build37)
Map Location 31,794,456 - 31,935,229
singlet/doubletdoublet
Overlap geneLamc3, 2810003C17Rik, Nup214, A130092J06Rik
Upstream geneTor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1
Downstream geneLOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155N10.bB6Ng01-155N10.g
ACCDH950507DH950508
length1,111968
definitionDH950507|Mus musculus domesticus DNA, BAC clone: B6Ng01-155N10, 5' end.DH950508|Mus musculus domesticus DNA, BAC clone: B6Ng01-155N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,794,456 - 31,795,580)(31,934,263 - 31,935,229)
sequence
gaattctcttcatgggtgcttaaactcccgaagggctgacttgaaactgg
gagttctaggtgcagtttcttgtcccacaactcctcttccctctctccgg
acctcttgtttcctcatctataaaataggtagaatttctccactaaggag
gaataaggagtttatagtaatttgtactgggaacacatctcatctccagt
gcatacctgttgactgtgggaatgaatgagtgaatgagtgagtgagttct
agattatgaagtaagtacactgcttggcattgtgtcgtaaaagatgttgt
ccaagccagacctagtggtacaagcctatatcccagctactttgagggct
gattcaggagtatcacaaatccagggctggcctaggtaacttagagaact
cctatttcaaaacaaaatataggaacaggtcctggcatgcggatcagctg
taaagtacttaccaagcatgtctgagactctggtttccaccttcaatacc
gaaaaagaaaaacaaagaacaacgttcctctttcccaaagggctcattct
tcccatccccgctgctgtcttgcagctctccagagctttgctgagggaag
gcaagcagggctaccgtcatgccagccgactcgccagccagacccaggcc
acactccgtcgggcctctcgcctgctgctgacctcagaagcacacaagca
ggagctggaggaagctaaacaggtgggtgtgtgcagcccattccccctgt
gcccagtgtctttgttagcattgtcgttactgcgagaaacaccatgacca
aagcaacttgggaaaggaaaggatttattccacttgtatttccagatagc
aatccatcaccaagggaagtcagaacaggaactcaagcaggcaagaacta
ggagcaggagctgatgcagagccatagagggggctgcttactggcttgct
cccatggctgctagctgctgtcttatagcaccattctggttgatacagca
gcatgcctgggccacccacatcaatactattagaaattccaaaggctgag
agaatggcctcaatatttaaaaaaattttctgttctgctaagaggtcctg
agttcaatttc
gaattccaaaagccaccgcctcagtcacagcccaactgccggggtgtgct
ggaagatggcgtctctcgtgggcccgcatgagagcgttctatatggcgtt
gggtccaacccacagtactttccatgtcaacctccctccaaactgttgga
gacacctgcctcctcagctgtcccccgcaattcctcaactgccacctgtc
agctgggatagagccttctaagtgacaagttacagttccttgcctgtgtg
ggagacgccgtgaatgttgtccctggtttgcccttctttggagctctccc
aaaacctggcccaaagccaaggccaaggccaaggccaaggccaaggacag
gagcagtgcagctcagatgctgtggagggaacgggagcagagcagttcag
acctcgtagttcccatctgtggcaagggcatgcccacctccctgcttgct
tggctccgtgggatgaatgaggtagagtacgtggcaccaagccagcaccc
tggaacaccccctgctccatctccccaggtaccacgattacaaatctggg
tatcaatgttgggttattgttctatgctgtgtgaccagatattgttactc
tctgtgttctctctgggtaccttttccatagcaggacggccttgacccct
gaggccatgtgggttttcctgacccacacatgtgctgtcatgggcttgga
tagactttgtgtgagaacactggaactctggttatctttctccctgcttc
cctgctatctctgggggtgcatcccaggacctcagaggctctaacttaag
gaatccgaatgcagactaataaatcccaagccactttgccaagtaacgtt
tgctcacacctgagaattgggggatgccacggagaatgtccttgcttgcc
ctctccggaactggagcaggctgaggctcacaagaacaattggaagacta
atactttcttgtcttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_31794456_31795580
seq2: B6Ng01-155N10.b_44_1154

seq1  GAATTCTCTTCATGGGTGCTTAAACTCCCGAAGGGCTGACTTGAAACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCATGGGTGCTTAAACTCCCGAAGGGCTGACTTGAAACTGG  50

seq1  GAGTTCTAGGTGCAGTTTCTTGTCCCACAACTCCTCTTCCCTCTCTCCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTAGGTGCAGTTTCTTGTCCCACAACTCCTCTTCCCTCTCTCCGG  100

seq1  ACCTCTTGTTTCCTCATCTATAAAATAGGTAGAATTTCTCCACTAAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTGTTTCCTCATCTATAAAATAGGTAGAATTTCTCCACTAAGGAG  150

seq1  GAATAAGGAGTTTATAGTAATTTGTACTGGGAACACATCTCATCTCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGGAGTTTATAGTAATTTGTACTGGGAACACATCTCATCTCCAGT  200

seq1  GCATACCTGTTGACTGTGGGAATGAATGAGTGAATGAGTGAGTGAGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCTGTTGACTGTGGGAATGAATGAGTGAATGAGTGAGTGAGTTCT  250

seq1  AGATTATGAAGTAAGTACACTGCTTGGCATTGTGTCGTAAAAGATGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGAAGTAAGTACACTGCTTGGCATTGTGTCGTAAAAGATGTTGT  300

seq1  CCAAGCCAGACCTAGTGGTACAAGCCTATATCCCAGCTACTTTGAGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCAGACCTAGTGGTACAAGCCTATATCCCAGCTACTTTGAGGGCT  350

seq1  GATTCAGGAGTATCACAAATCCAGGGCTGGCCTAGGTAACTTAGAGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGGAGTATCACAAATCCAGGGCTGGCCTAGGTAACTTAGAGAACT  400

seq1  CCTATTTCAAAACAAAATATAGGAACAGGTCCTGGCATGCGGATCAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTCAAAACAAAATATAGGAACAGGTCCTGGCATGCGGATCAGCTG  450

seq1  TAAAGTACTTACCAAGCATGTCTGAGACTCTGGTTTCCACCTTCAATACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTACTTACCAAGCATGTCTGAGACTCTGGTTTCCACCTTCAATACC  500

seq1  GAAAAAGAAAAACAAAGAACAACGTTCCTCTTTCCCAAAGGGCTCATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAAAACAAAGAACAACGTTCCTCTTTCCCAAAGGGCTCATTCT  550

seq1  TCCCATCCCCGCTGCTGTCTTGCAGCTCTCCAGAGCTTTGCTGAGGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCCCCGCTGCTGTCTTGCAGCTCTCCAGAGCTTTGCTGAGGGAAG  600

seq1  GCAAGCAGGGCTACCGTCATGCCAGCCGACTCGCCAGCCAGACCCAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAGGGCTACCGTCATGCCAGCCGACTCGCCAGCCAGACCCAGGCC  650

seq1  ACACTCCGTCGGGCCTCTCGCCTGCTGCTGACCTCAGAAGCACACAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCGTCGGGCCTCTCGCCTGCTGCTGACCTCAGAAGCACACAAGCA  700

seq1  GGAGCTGGAGGAAGCTAAACAGGTGGGTGTGTGCAGCCCATTCCCCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGAGGAAGCTAAACAGGTGGGTGTGTGCAGCCCATTCCCCCTGT  750

seq1  GCCCAGTGTCTTTGTTAGCATTGTCGTTACTGCGAGAAACACCATGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGTCTTTGTTAGCATTGTCGTTACTGCGAGAAACACCATGACCA  800

seq1  AAGCAACTTGGG-AAGGAAAGGATTTATTCCACTTGTATTTCCAGATAGC  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTTGGGAAAGGAAAGGATTTATTCCACTTGTATTTCCAGATAGC  850

seq1  AATCCATCACCAAGGGAAGTCAGAACAGGAACTCAAGCAGGGCAAGAACT  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATCCATCACCAAGGGAAGTCAGAACAGGAACTCAAGCA-GGCAAGAACT  899

seq1  AGGAGGCAGGAGCTGATGCAGAGGCCATAGAGGGGGGCTGCTTACTGGCT  949
      |||| ||||||||||||||||| |||||||| ||||||||||||||||||
seq2  AGGA-GCAGGAGCTGATGCAGA-GCCATAGA-GGGGGCTGCTTACTGGCT  946

seq1  TGCTCCCCATGGCTTGCTTAGCCTGCTGTCTTATAGCACCATTCTGGGTT  999
      |||| |||||||| ||| ||| ||||||||||||||||||||||| ||||
seq2  TGCT-CCCATGGC-TGC-TAG-CTGCTGTCTTATAGCACCATTCT-GGTT  991

seq1  GATACCAGCAAGCATGCCTGGGCCCACCCACATCAATACTAATTAGGAAA  1049
      |||| |||| |||||||||||| ||||||||||||||||| |||||  ||
seq2  GATA-CAGC-AGCATGCCTGGG-CCACCCACATCAATACT-ATTAG--AA  1035

seq1  ATTCCATAGGGGCTGGAGAG-ATGG-CTCAGTATTTAAGAACATTTTCTG  1097
      |||||| |  |||| ||||| |||| |||| ||||||| || ||||||||
seq2  ATTCCAAA--GGCT-GAGAGAATGGCCTCAATATTTAAAAAAATTTTCTG  1082

seq1  TTCTGCT-AGAGGTCCTGAGTTCAATTTC  1125
      ||||||| |||||||||||||||||||||
seq2  TTCTGCTAAGAGGTCCTGAGTTCAATTTC  1111

seq1: chr2_31934263_31935229
seq2: B6Ng01-155N10.g_67_1034 (reverse)

seq1  CCCAAGAC-AGGAAGTA-TAGTCTT-CAATTGTTC-TGTGAGGCCTCAGG  46
      |||||||| || ||||| ||||||| ||||||||| ||||| ||||||| 
seq2  CCCAAGACAAGAAAGTATTAGTCTTCCAATTGTTCTTGTGA-GCCTCAG-  48

seq1  CCCTGGCTCCAGTTCCGGGAAGAGGCCAGCAGGGACATTCCTCCGTGGCC  96
       ||| |||||||||||||  || ||| |||| ||||||| |||||||| |
seq2  -CCT-GCTCCAGTTCCGGAGAG-GGCAAGCAAGGACATT-CTCCGTGG-C  93

seq1  ATCCCCCAAATCTCAGGTGCTGAGCAAACGTTACTGGGC-AAGTGGCTTT  145
      ||||||||| ||||||||| ||||||||||||||| ||| ||||||| ||
seq2  ATCCCCCAATTCTCAGGTG-TGAGCAAACGTTACTTGGCAAAGTGGC-TT  141

seq1  GGGATTTA-TAGTCTGCATTCCGATTCCTTAAGTTAGAGCCTCTGAGGTC  194
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  GGGATTTATTAGTCTGCATTCGGATTCCTTAAGTTAGAGCCTCTGAGGTC  191

seq1  CTGGGATGCA-CCCCAGAGATAGCAGGG-AGCAGGGAGAAAGATAACCAG  242
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  CTGGGATGCACCCCCAGAGATAGCAGGGAAGCAGGGAGAAAGATAACCAG  241

seq1  AGTTCCAGTGTTCTCACACAAAGTCTATCCAAG-CCATGACAGCACATGT  291
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTTCCAGTGTTCTCACACAAAGTCTATCCAAGCCCATGACAGCACATGT  291

seq1  GTGGGTCAGGAAAACCCACATGGCCTCAGGGGTCAAGGCCGTCCTGCTAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCAGGAAAACCCACATGGCCTCAGGGGTCAAGGCCGTCCTGCTAT  341

seq1  GG-AAAGGTACCCAGAGAGAACACAGAGAGTAACAATATCTGGTCACACA  390
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGTACCCAGAGAGAACACAGAGAGTAACAATATCTGGTCACACA  391

seq1  GCATAGAACAATAACCCAACATTGATACCCAGATTTGTAATCGTGGTACC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAACAATAACCCAACATTGATACCCAGATTTGTAATCGTGGTACC  441

seq1  TGGGGAGATGGAGCAGGGGGTGTTCCAGGGTGCTGGCTTGGTGCCACGTA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGATGGAGCAGGGGGTGTTCCAGGGTGCTGGCTTGGTGCCACGTA  491

seq1  CTCTACCTCATTCATCCCACGGAGCCAAGCAAGCAGGGAGGTGGGCATGC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTCATTCATCCCACGGAGCCAAGCAAGCAGGGAGGTGGGCATGC  541

seq1  CCTTGCCACAGATGGGAACTACGAGGTCTGAACTGCTCTGCTCCCGTTCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCACAGATGGGAACTACGAGGTCTGAACTGCTCTGCTCCCGTTCC  591

seq1  CTCCACAGCATCTGAGCTGCACTGCTCCTGTCCTTGGCCTTGGCCTTGGC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGCATCTGAGCTGCACTGCTCCTGTCCTTGGCCTTGGCCTTGGC  641

seq1  CTTGGCCTTGGCTTTGGGCCAGGTTTTGGGAGAGCTCCAAAGAAGGGCAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCTTGGCTTTGGGCCAGGTTTTGGGAGAGCTCCAAAGAAGGGCAA  691

seq1  ACCAGGGACAACATTCACGGCGTCTCCCACACAGGCAAGGAACTGTAACT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGACAACATTCACGGCGTCTCCCACACAGGCAAGGAACTGTAACT  741

seq1  TGTCACTTAGAAGGCTCTATCCCAGCTGACAGGTGGCAGTTGAGGAATTG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTAGAAGGCTCTATCCCAGCTGACAGGTGGCAGTTGAGGAATTG  791

seq1  CGGGGGACAGCTGAGGAGGCAGGTGTCTCCAACAGTTTGGAGGGAGGTTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGACAGCTGAGGAGGCAGGTGTCTCCAACAGTTTGGAGGGAGGTTG  841

seq1  ACATGGAAAGTACTGTGGGTTGGACCCAACGCCATATAGAACGCTCTCAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAAGTACTGTGGGTTGGACCCAACGCCATATAGAACGCTCTCAT  891

seq1  GCGGGCCCACGAGAGACGCCATCTTCCAGCACACCCCGGCAGTTGGGCTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCCCACGAGAGACGCCATCTTCCAGCACACCCCGGCAGTTGGGCTG  941

seq1  TGACTGAGGCGGTGGCTTTTGGAATTC  967
      |||||||||||||||||||||||||||
seq2  TGACTGAGGCGGTGGCTTTTGGAATTC  968