BAC Information

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BAC

Clone NameB6Ng01-157L22
Chromosome2 (Build37)9 (Build37)
Map Location 178,417,450 - 178,418,53785,987,397 - 85,987,593
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26
Downstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413, Cdh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157L22.bB6Ng01-157L22.g
ACCDH951895DH951896
length1,083555
definitionDH951895|Mus musculus domesticus DNA, BAC clone: B6Ng01-157L22, 5' end.DH951896|Mus musculus domesticus DNA, BAC clone: B6Ng01-157L22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(178,417,450 - 178,418,537)(85,987,397 - 85,987,593)
sequence
gaattcatcgctggaggaagtgggagccttctttggcttgtgaccatatt
aaatacaatttgctactaaaggcacctgatacatttagctagatattgga
aggggtagaagaaagatctattgagataaaggttcggacagcttgtcgaa
tgcgaagccgtcacatgctgcacggtgttacacaagtcaggaagacctga
ggaagattctcaaacctcttaaacagtgttttcttctccatttctgcatc
agaaatatggagcacagccgttctcattaacgcagattttaatagaagat
attcgtctgcattgctccgtggtttctgcttgcatggggctgccatttac
aacaagtgtaatagcatctttgagctttttaattaaaaattaattaggag
atttaagcacaaactcattgggggttactgtacaataacatgtttacgaa
attaggtctgggctttttgttccagctaagtgtttcaatcaattctgtgt
ctattaaatgtaattacgtatgatgctttcttagaacgataaggcagcct
ttaaaagcagctgggagacgtctacacattccagtctggaattagggtga
ctattaagaggcaaatagaggcaactgtagctagtggatccaggatggga
tgggggacaagcttgatacaaagtttctgtaggagctgttccagctgcct
ttcctgggtcttgcctgttgcttctcattctgtcggggatttcccgtgct
aactgcttgttacatctcacttctcctggaggaagaagagatggaacacg
ttgattccctccctacattgatttatcagagttttatcacaccaacagag
cacaaaccaggacaaccattatccttttatttttatttttgagtcatgtt
cttgctaagttgcccatgctggcttctgtagccccagctgggcttcagct
cattctgtaatctaagctgacattaaacttgagatccttctgcctcagcc
ttctgagaggcagtattgtgggtctgtgtaccagacctgattaatatgaa
atttcatccaaaccttaactacctcatcacact
gaattcaaaagacaagcaagcaaaccaaacaaacaacctcccccccacac
acacaaacaaaaggacaaaatcaatccaatagtgagcattccatattcca
tcctcactttgaccaaaaccttcctgtcttcacgctgagtgtattcgcct
tggtttttcataaaacctaggatacccaagatataagatacaatttccta
aacacatgaaactcaagaaaaatgaagactgaagtgtggacactatgccc
ctccttagaagtgggaacaaaatacccttggaaggagttacagagacaaa
gtttggagctgagatgaaaggatggaccatgtagagactgccatatccag
ggatccaccccataatcagcatccaaacactgacaccattgcatacacta
gcaagattttatcgaaaggacccagatgtagctgtctcttgtgagactat
gccggggcctagcaaacacagaagtggatgctcacagtcagctaatggat
ggatcacagggctcccaatggaggagctagagaaagtacccaaggagcta
aaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_178417450_178418537
seq2: B6Ng01-157L22.b_48_1130

seq1  GAATTCATCGCTGGAGGAAGTGGGAGCCTTCTTTGGCTTGTGACCATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCGCTGGAGGAAGTGGGAGCCTTCTTTGGCTTGTGACCATATT  50

seq1  AAATACAATTTGCTACTAAAGGCACCTGATACATTTAGCTAGATATTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAATTTGCTACTAAAGGCACCTGATACATTTAGCTAGATATTGGA  100

seq1  AGGGGTAGAAGAAAGATCTATTGAGATAAAGGTTCGGACAGCTTGTCGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTAGAAGAAAGATCTATTGAGATAAAGGTTCGGACAGCTTGTCGAA  150

seq1  TGCGAAGCCGTCACATGCTGCACGGTGTTACACAAGTCAGGAAGACCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAAGCCGTCACATGCTGCACGGTGTTACACAAGTCAGGAAGACCTGA  200

seq1  GGAAGATTCTCAAACCTCTTAAACAGTGTTTTCTTCTCCATTTCTGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATTCTCAAACCTCTTAAACAGTGTTTTCTTCTCCATTTCTGCATC  250

seq1  AGAAATATGGAGCACAGCCGTTCTCATTAACGCAGATTTTAATAGAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATGGAGCACAGCCGTTCTCATTAACGCAGATTTTAATAGAAGAT  300

seq1  ATTCGTCTGCATTGCTCCGTGGTTTCTGCTTGCATGGGGCTGCCATTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTCTGCATTGCTCCGTGGTTTCTGCTTGCATGGGGCTGCCATTTAC  350

seq1  AACAAGTGTAATAGCATCTTTGAGCTTTTTAATTAAAAATTAATTAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTGTAATAGCATCTTTGAGCTTTTTAATTAAAAATTAATTAGGAG  400

seq1  ATTTAAGCACAAACTCATTGGGGGTTACTGTACAATAACATGTTTACGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGCACAAACTCATTGGGGGTTACTGTACAATAACATGTTTACGAA  450

seq1  ATTAGGTCTGGGCTTTTTGTTCCAGCTAAGTGTTTCAATCAATTCTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTCTGGGCTTTTTGTTCCAGCTAAGTGTTTCAATCAATTCTGTGT  500

seq1  CTATTAAATGTAATTACGTATGATGCTTTCTTAGAACGATAAGGCAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAATGTAATTACGTATGATGCTTTCTTAGAACGATAAGGCAGCCT  550

seq1  TTAAAAGCAGCTGGGAGACGTCTACACATTCCAGTCTGGAATTAGGGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCAGCTGGGAGACGTCTACACATTCCAGTCTGGAATTAGGGTGA  600

seq1  CTATTAAGAGGCAAATAGAGGCAACTGTAGCTAGTGGATCCAGGATGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAGAGGCAAATAGAGGCAACTGTAGCTAGTGGATCCAGGATGGGA  650

seq1  TGGGGGACAAGCTTGATACAAAGTTTCTGTAGGAGCTGTTCCAGCTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGACAAGCTTGATACAAAGTTTCTGTAGGAGCTGTTCCAGCTGCCT  700

seq1  TTCCTGGGTCTTGCCTGTTGCTTCTCATTCTGTCGGGGATTTCCCGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGTCTTGCCTGTTGCTTCTCATTCTGTCGGGGATTTCCCGTGCT  750

seq1  AACTGCTTGTTACATCTCACTTCTCCTGGAGGAAGAAGAGATGGAACACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTGTTACATCTCACTTCTCCTGGAGGAAGAAGAGATGGAACACG  800

seq1  TTGATTCCCTCCCTACATTGATTTATCAGAGTTTTATCACACCAACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCCCTCCCTACATTGATTTATCAGAGTTTTATCACACCAACAGAG  850

seq1  CACAAACCAGGACAACCATTATCCTTTTATTTTTTATTTTTGAGTCATGT  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CACAAACCAGGACAACCATTATCCTTTTA-TTTTTATTTTTGAGTCATGT  899

seq1  TCTTGCTAAGTTGCCCATGCTGGCTTCTGTAGCCCCAGCTGGGCTTCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTAAGTTGCCCATGCTGGCTTCTGTAGCCCCAGCTGGGCTTCAGC  949

seq1  TCATTCTGTAACCTAAGCTGACATTAAACTTGAGATCCTTCTGCCTCAGC  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGTAATCTAAGCTGACATTAAACTTGAGATCCTTCTGCCTCAGC  999

seq1  CTTCTGGAGAGGCAGTATTGTGGGTCTGTGTTACCAGACCTGATTAATAA  1050
      ||||| |||||||||||||||||||||||| ||||||||||||||||| |
seq2  CTTCT-GAGAGGCAGTATTGTGGGTCTGTG-TACCAGACCTGATTAAT-A  1046

seq1  TGAAATTTCCATCCAAACCTAAACTACCTCATCACACT  1088
      |||||||| ||||||||||| |||||||||||||||||
seq2  TGAAATTT-CATCCAAACCTTAACTACCTCATCACACT  1083

seq1: chr9_85987397_85987593
seq2: B6Ng01-157L22.g_425_621

seq1  CCCATAATCAGCCTCCAAACGCTGACACCATTGCATACACTAGCAAGATT  50
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  CCCATAATCAGCATCCAAACACTGACACCATTGCATACACTAGCAAGATT  50

seq1  TTGCTGAAAGGACCCTGATATAGGTGTCTCTTGTGAGACTATGCCGGGGC  100
      ||   |||||||||| ||| ||| ||||||||||||||||||||||||||
seq2  TTATCGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGC  100

seq1  CTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGAATCACA  150
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  CTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACA  150

seq1  GGGCCCCCAATAGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGG  197
      |||| |||||| |||||||||||||||||||||||||||||||||||
seq2  GGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGG  197