BAC Information

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BAC

Clone NameB6Ng01-157N17
Chromosome7 (Build37)2 (Build37)
Map Location 49,864,581 - 49,864,79432,292,410 - 32,293,492
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776
Downstream geneC330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157N17.bB6Ng01-157N17.g
ACCDH951975DH951976
length5421,069
definitionDH951975|Mus musculus domesticus DNA, BAC clone: B6Ng01-157N17, 5' end.DH951976|Mus musculus domesticus DNA, BAC clone: B6Ng01-157N17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,864,581 - 49,864,794)(32,292,410 - 32,293,492)
sequence
gaattccagggatctaatttagatggtcagccttgacaggaagcaaccag
taccgactgggtcatctcaccggctctgtgctttaattaaaaagtttttt
tttttgtgtaattagatttacttacttcatgtgtattttgcctgcatgta
tgtatgtgtagtgtagtgcccacagaagtcacgagaaggctttggagtct
ctggaaatggaatctcaggtgactcttaagcaccaagtggcagccccagt
tgtgagctaccgcgtgggtatttggactctaactcgggtcctctgtaaga
acaagtgcttataaccaccaatccgtatccccagcagccaccctcactcc
cacccctcccctgaacgtctttttcttttttcttcctcccccccacccaa
ggtgtgtctatgtagccctggctgtcctggaactaacaaagttcacaaag
acctacctgcctctgcctcctaaatgctgggattaaaggcatgcaccacc
ctgctggcttttatttttcatttatgtatgtgtgtgtatcat
gaattcagggcaaaggcacatccttagcctaacaagtcaatcctttcata
aacctgaacactgtttaggcacagagaggctgaagaaatgaaggagaaag
tgctgtctggggttcccactacaaaacccacttatgtaggtgttggctgt
aattgaatagatttctccataccacggagctgagttacaaacactagggc
ttccagccaggatagagtatcaaggaactgattcacaccttcctgtgtgt
agctagaaaaaactcataacacatgaagtaatgttttcaagccactgaac
aggcacaaagggcaccacttcctgaggaatgtgtatggatgaggcaattc
ccagcactgccatagcttcctgccgcaagttcccaggctctcatgaagag
gaagagcttgaacagagctgggcaacctcccagtctgcaagagatgaggc
tgcttctagggcagtctgagtattcagagcagggtaccaaagaagagaca
gttgcagagctgcagaatgtcccctaggaatcacaacacaccgctgagtt
cagagatggtcctgaccaggaggaaacctaccacacagagtttagggaat
agcactcatgggggtctggcttcattcatgggcaaagtcagactgtacct
atcaaagtaagccctctgatattcaataatctgggtgtttcaaataagca
cacccagactaacactcaagagtatttataggaatacaaagttagctggc
atacaatggggtaaaatccagagccaggccttcttggctatagtgtcagt
tactcagtggctgaagtaggagatcgaacattcaagatcagactcgtgac
cttagctttcactgtaagtcaggaaagggcaaccaactcagggaataaat
taggctaggatgcacactctctccttgcacagactaggatcatgaagctg
tcgattactgactgctttgagtaaacgcttcatctctgctgattctcctc
atttctcatgcacagtcatctagatcaaagctctggggagatcactgggt
cctgtggtgctaatcaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49864581_49864794
seq2: B6Ng01-157N17.b_133_542

seq1  --------------------------------------------------  0
                                                        
seq2  AAAAAGTTTTTTTTTTTGTGTAATTAGATTTACTTACTTCATGTGTATTT  50

seq1  --------------------------------------------------  0
                                                        
seq2  TGCCTGCATGTATGTATGTGTAGTGTAGTGCCCACAGAAGTCACGAGAAG  100

seq1  --------------------------------------------------  0
                                                        
seq2  GCTTTGGAGTCTCTGGAAATGGAATCTCAGGTGACTCTTAAGCACCAAGT  150

seq1  --------------------------------------------------  0
                                                        
seq2  GGCAGCCCCAGTTGTGAGCTACCGCGTGGGTATTTGGACTCTAACTCGGG  200

seq1  -----------AAAAAGTTTTTTT-------TTTGAGGGGAAGAAGGTGG  32
                 || ||||  || |         |  |       ||  | 
seq2  TCCTCTGTAAGAACAAGTGCTTATAACCACCAATCCGTATCCCCAGCAGC  250

seq1  TGCCCTGGATGCCTCC---TAAAGAAAATTCTTTTTTTTTGGGGGGGGGG  79
        ||||   | || ||         ||  ||||||| |||          
seq2  CACCCTCACTCCCACCCCTCCCCTGAACGTCTTTTTCTTT----------  290

seq1  GGTTGTT-------TCCAGACAGGGTTTCTGTGTATAGTCCTGGCTGTCC  122
        || ||        |||  || ||| | | | | ||| |||||||||||
seq2  -TTTCTTCCTCCCCCCCACCCAAGGTGTGTCTATGTAGCCCTGGCTGTCC  339

seq1  TGGAACTCATTCTGTAGATCAGACTGGCCTCGAACTCAGAAATCCACCTG  172
      |||||||          | || |        |  | || | | | |||||
seq2  TGGAACT----------AACAAA--------GTTCACAAAGACCTACCTG  371

seq1  CCTCTGCCTCCCAAGTGCTGGGACTAAAGGCATGTGCCACCA  214
      ||||||||||| || |||||||| ||||||||||   |||||
seq2  CCTCTGCCTCCTAAATGCTGGGATTAAAGGCATG---CACCA  410

seq1: chr2_32292410_32293492
seq2: B6Ng01-157N17.g_66_1134

seq1  GAATTCAGGGCAAAGGCACATCCTTAGCCTAACAAGTCAATCCTTTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCAAAGGCACATCCTTAGCCTAACAAGTCAATCCTTTCATA  50

seq1  AACCTGAACACTGTTTAGGCACAGAGAGGCTGAAGAAATGAAGGAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAACACTGTTTAGGCACAGAGAGGCTGAAGAAATGAAGGAGAAAG  100

seq1  TGCTGTCTGGGGTTCCCACTACAAAACCCACTTATGTAGGTGTTGGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTGGGGTTCCCACTACAAAACCCACTTATGTAGGTGTTGGCTGT  150

seq1  AATTGAATAGATTTCTCCATACCACGGAGCTGAGTTACAAACACTAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATAGATTTCTCCATACCACGGAGCTGAGTTACAAACACTAGGGC  200

seq1  TTCCAGCCAGGATAGAGTATCAAGGAACTGATTCACACCTTCCTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCCAGGATAGAGTATCAAGGAACTGATTCACACCTTCCTGTGTGT  250

seq1  AGCTAGAAAAAACTCAGAACACATGAAGTAATGTTTTCAAGCCACTGAAC  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCTAGAAAAAACTCATAACACATGAAGTAATGTTTTCAAGCCACTGAAC  300

seq1  AGGCACAAAGGGCACCACTTCCTGAGGAATGTGTATGGATGAGGCAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAAAGGGCACCACTTCCTGAGGAATGTGTATGGATGAGGCAATTC  350

seq1  CCAGCACTGCCATAGCTTCCTGCCGCAAGTTCCCAGGCTCTCATGAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTGCCATAGCTTCCTGCCGCAAGTTCCCAGGCTCTCATGAAGAG  400

seq1  GAAGAGCTTGAACAGAGCTGGGCAACCTCCCAGTCTGCAAGAGATGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTTGAACAGAGCTGGGCAACCTCCCAGTCTGCAAGAGATGAGGC  450

seq1  TGCTTCTAGGGCAGTCTGAGTATTCAGAGCAGGGTACCAAAGAGGAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCTTCTAGGGCAGTCTGAGTATTCAGAGCAGGGTACCAAAGAAGAGACA  500

seq1  GTTGCAGAGCTGCAGAATGTCCCCTAGGAATCACAACACACCGCTGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGAGCTGCAGAATGTCCCCTAGGAATCACAACACACCGCTGAGTT  550

seq1  CAGAGATGGTCCTGACCAGGAGGAAACCTACCACACAGAGTTTAGGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGGTCCTGACCAGGAGGAAACCTACCACACAGAGTTTAGGGAAT  600

seq1  AGCACTCATGGGGGTCTGGCTTCATTCATGGGCAAAGTCAGACTGTACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCATGGGGGTCTGGCTTCATTCATGGGCAAAGTCAGACTGTACCT  650

seq1  ATCAAAGTAAGCCCTCTGATATTCAATAATCTGGGTGTTTCAAATAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGTAAGCCCTCTGATATTCAATAATCTGGGTGTTTCAAATAAGCA  700

seq1  CACCCAGACTAACACTCAAGAGTATTTATAGGAATACAAAGTTAGCTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGACTAACACTCAAGAGTATTTATAGGAATACAAAGTTAGCTGGC  750

seq1  ATTCAATGGGGTAAAATCCAGAGCCAGGCCTTCTTGGCTATAGTTTCAGT  800
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATACAATGGGGTAAAATCCAGAGCCAGGCCTTCTTGGCTATAGTGTCAGT  800

seq1  TACTCAGTGGCTGAAGTAGGAAGATCAAACATTCAAGAACAGACTCAGTG  850
      |||||||||||||||||||| ||||| ||||||||||| ||||||| |||
seq2  TACTCAGTGGCTGAAGTAGG-AGATCGAACATTCAAGATCAGACTC-GTG  848

seq1  ACCTTAGCTTTCACTGTAAGTCAGGAAAGGGCAAACCAAACACAAAGGAA  900
      ||||||||||||||||||||||||||||||||||  | ||| | | ||||
seq2  ACCTTAGCTTTCACTGTAAGTCAGGAAAGGGCAA--CCAACTC-AGGGAA  895

seq1  TAAATTAGGCCAGGAAGCCACAACTCTCTCCCTTGCACAGACTAGGATCA  950
      |||||||||| |||| | ||| ||||||| ||||||||||||||||||||
seq2  TAAATTAGGCTAGGATG-CAC-ACTCTCT-CCTTGCACAGACTAGGATCA  942

seq1  TGGAGCTGTGGTTTACCGAGTGCTCTGTGTTAAACGCTTCCATCTCTGCT  1000
      || |||||| | |||| || |||| || | ||||||||| ||||||||||
seq2  TGAAGCTGTCGATTACTGACTGCTTTGAG-TAAACGCTT-CATCTCTGCT  990

seq1  GCATATCTCTCATTTCTTATGCCACAG-CATCTAAATCAGAGCTCTGGGG  1049
      |  | || ||||||||| ||| ||||| |||||| |||| ||||||||||
seq2  GATTCTC-CTCATTTCTCATG-CACAGTCATCTAGATCAAAGCTCTGGGG  1038

seq1  AGATCACTGGTTTCCTGTGGGTGACTTATCAATT  1083
      ||||||||||  |||||| |||| || |||||||
seq2  AGATCACTGG-GTCCTGT-GGTG-CTAATCAATT  1069