BAC Information

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BAC

Clone NameB6Ng01-159B06
Chromosome2 (Build37)19 (Build37)
Map Location 61,551,126 - 61,552,26428,936,336 - 28,936,435
singlet/doubletsingletsinglet
Overlap genePsmd14
Upstream geneRbms1, ENSMUSG00000075325, Tank
Downstream geneTbr1, LOC100039274, Slc4a10, Dpp4, Gcg, Fap, Ifih1, Gca, Kcnh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159B06.bB6Ng01-159B06.g
ACCDH952849DH952850
length1,117311
definitionDH952849|Mus musculus domesticus DNA, BAC clone: B6Ng01-159B06, 5' end.DH952850|Mus musculus domesticus DNA, BAC clone: B6Ng01-159B06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,551,126 - 61,552,264)(28,936,336 - 28,936,435)
sequence
gaattcaggaggcagaggcaggctgatctctgagttgaagaccagcctag
tctacaaaaacgagttctgagccagttagggctatacagtgagatcctgt
ctcacaaaaacaacaacaacaacaaaaataatatgaaagcgctagtaaag
atctaatttatagaaaaggccttaaatgttagcaaagaaatacagttctc
atgtgaacactcgcagtactagggaggaaaaggtggggagaatcttctgc
tgtttgaggccggcctggtctgtgtaaccgattataggtcaggctgctgc
tggttctgcttttctgtttgtttttgagatggcttctccctacacagccc
aggctaaccactgcctgatgggatcttcctgctttagcctccacagtgta
gtgttggaattacaggtatgtgcatcagtacccagcctaaaaattggttg
tactgctgcaaacataatgtaagtaaagcaacaagacaagcacttaacgt
tgaagttggaaactggacagattgtcaatgtggataattaatataatggt
gcccgtcttgccatgttacctcaatcaatggtttgttttttaatgtttaa
attctattgcttagggccttgagagagttcctgcagagtacctgggttct
attcccagcacccatatccagtgactcacaatggattgtaactccagctc
tgcagatgtcctggggtacctgtactgatgtgtagataccctccccccac
acaattaaaacaatacaaataaattgtatgtcttaaagtgcataggttgt
atatgtagacataattaagataaacagtggctcatcattaactatagtga
atgtgttttggtaaagaactgaaagttgttttgaatttgcctaaaacaaa
gttaaatcttgtcaaagaacacattttgaagttctgatctttatttactc
tcactgttggatttgggacgtttatcccacccccacccaataagatcttg
atataaacattgttatgtagttaaaagctggattttacttcaggactgga
tcatctctttgatacttgcatataaaactatactagtacctagatcggat
catttgaagtcagtaac
caggatagtcagggctacacagggaaacactgtctcataaaaaaggaaag
gaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaag
aaaagaaaagaaaagaaaagaagagaagagaaaagaaaaaaaggaaagaa
aagaaagcagaaaaaaagaaaagaaggaaggaaggaggaaagaaacagag
agaaagaaagaaagagatagagaaagaaggaaggaaggaaggaaggaagg
aaggaaggaaggaaggaaggaaggaaggaaggaaggaaaaagagagagag
agagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_61551126_61552264
seq2: B6Ng01-159B06.b_48_1164

seq1  GAATTCAGGAGGCAGAGGCAGGCTGATCTCTGAGTTGAAGACCAGCCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGGCAGAGGCAGGCTGATCTCTGAGTTGAAGACCAGCCTAG  50

seq1  TCTACAAAAACGAGTTCTGAGCCAGTTAGGGCTATACAGTGAGATCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAAACGAGTTCTGAGCCAGTTAGGGCTATACAGTGAGATCCTGT  100

seq1  CTCACAAAAACAACAACAACAACAAAAATAATATGAAAGCGCTAGTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAAAACAACAACAACAACAAAAATAATATGAAAGCGCTAGTAAAG  150

seq1  ATCTAATTTATAGAAAAGGCCTTAAATGTTAGCAAAGAAATACAGTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATTTATAGAAAAGGCCTTAAATGTTAGCAAAGAAATACAGTTCTC  200

seq1  ATGTGAACACTCGCAGTACTAGGGAGGAAAAGGTGGGGAGAATCTTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAACACTCGCAGTACTAGGGAGGAAAAGGTGGGGAGAATCTTCTGC  250

seq1  TGTTTGAGGCCGGCCTGGTCTGTGTAACCGATTATAGGTCAGGCTGCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGGCCGGCCTGGTCTGTGTAACCGATTATAGGTCAGGCTGCTGC  300

seq1  TGGTTCTGCTTTTCTGTTTGTTTTTGAGATGGCTTCTCCCTACACAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGCTTTTCTGTTTGTTTTTGAGATGGCTTCTCCCTACACAGCCC  350

seq1  AGGCTAACCACTGCCTGATGGGATCTTCCTGCTTTAGCCTCCACAGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAACCACTGCCTGATGGGATCTTCCTGCTTTAGCCTCCACAGTGTA  400

seq1  GTGTTGGAATTACAGGTATGTGCATCAGTACCCAGCCTAAAAATTGGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGAATTACAGGTATGTGCATCAGTACCCAGCCTAAAAATTGGTTG  450

seq1  TACTGCTGCAAACATAATGTAAGTAAAGCAACAAGACAAGCACTTAACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGCAAACATAATGTAAGTAAAGCAACAAGACAAGCACTTAACGT  500

seq1  TGAAGTTGGAAACTGGACAGATTGTCAATGTGGATAATTAATATAATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTGGAAACTGGACAGATTGTCAATGTGGATAATTAATATAATGGT  550

seq1  GCCCGTCTTGCCATGTTACCTCAATCAATGGTTTGTTTTTTAATGTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTCTTGCCATGTTACCTCAATCAATGGTTTGTTTTTTAATGTTTAA  600

seq1  ATTCTATTGCTTAGGGCCTTGAGAGAGTTCCTGCAGAGTACCTGGGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTGCTTAGGGCCTTGAGAGAGTTCCTGCAGAGTACCTGGGTTCT  650

seq1  ATTCCCAGCACCCATATCCAGTGACTCACAATGGATTGTAACTCCAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGCACCCATATCCAGTGACTCACAATGGATTGTAACTCCAGCTC  700

seq1  TGCAGATGTCCTGGGGTACCTGTACTGATGTGTAGATACCCTCCCCCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATGTCCTGGGGTACCTGTACTGATGTGTAGATACCCTCCCCCCAC  750

seq1  ACAATTAAAACAATACAAATAAATTGTATGTCTTAAAGTGCATAGGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAAAACAATACAAATAAATTGTATGTCTTAAAGTGCATAGGTTGT  800

seq1  ATATGTAGACATAATTAAGATAAACAGTGGCTCATCATTAACTATAGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAGACATAATTAAGATAAACAGTGGCTCATCATTAACTATAGTGA  850

seq1  ATGTGTTTTGGTAAAGAACTGAAAGTTGTTTTGAATTTGCCTAAAACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTTGGTAAAGAACTGAAAGTTGTTTTGAATTTGCCTAAAACAAA  900

seq1  GTTAAATCTTGTCAAAAGAACAACATTTTGAAGTTCTGATCTTTTATTTT  950
      ||||||||||||| ||||||| ||||||||||||||||||||||   |||
seq2  GTTAAATCTTGTC-AAAGAAC-ACATTTTGAAGTTCTGATCTTT--ATTT  946

seq1  ACTCTCACCTGTTGGATTTGGGACGTTTATCCCACCCCCACCCAATAAGA  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCA-CTGTTGGATTTGGGACGTTTATCCCACCCCCACCCAATAAGA  995

seq1  TCTTTGATAATAAAACATTGTTATTGTAGTTAAAAAGCTGGATTTTTAAC  1050
      || ||||||   ||||||||||| ||||||| ||||||||||||||  ||
seq2  TC-TTGATA--TAAACATTGTTA-TGTAGTT-AAAAGCTGGATTTT--AC  1038

seq1  TTCAGGGACTGGATTCATCTCCTTTGTATACTTGCCATATAAACACTATA  1100
      |||| |||||||| |||||| ||||| ||||||| |||||||| ||||||
seq2  TTCA-GGACTGGA-TCATCT-CTTTG-ATACTTG-CATATAAA-ACTATA  1082

seq1  CCTAGTACCTAGATTCAGAATCATTTGAAAGTCAGTAAC  1139
       |||||||||||||   | |||||||| |||||||||||
seq2  -CTAGTACCTAGAT--CGGATCATTTG-AAGTCAGTAAC  1117

seq1: chr19_28936336_28936435
seq2: B6Ng01-159B06.g_224_384 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTTCCTTTCTTTCCTTCCTTCCTTCCTTCCT  50
      ||||||||||||||||||||||  |||| |||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTT--TTTCCTTCCTTCCTTCCTTCCTTCCT  48

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTT-----TC-C  94
      |||||||||||||||||||||||||||||||||||||||||     || |
seq2  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCTCTATCTC  98

seq1  TTTCTT--------------------------------------------  100
      ||||||                                            
seq2  TTTCTTTCTTTCTCTCTGTTTCTTTCCTCCTTCCTTCCTTCTTTTCTTTT  148

seq1  -------------  100
                   
seq2  TTTCTGCTTTCTT  161