BAC Information

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BAC

Clone NameB6Ng01-159D07
Chromosome2 (Build37)
Map Location 30,746,508 - 30,880,953
singlet/doubletdoublet
Overlap genePtges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20
Upstream geneOdf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2
Downstream geneFnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159D07.bB6Ng01-159D07.g
ACCDH952940DH952941
length1,1001,143
definitionDH952940|Mus musculus domesticus DNA, BAC clone: B6Ng01-159D07, 5' end.DH952941|Mus musculus domesticus DNA, BAC clone: B6Ng01-159D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,746,508 - 30,747,621)(30,879,788 - 30,880,953)
sequence
gaattcacctggtcttatctaaaatttaagtattaactggggcattgggg
ttggggtgacaatgacagatgaaggtcgcatccagcctaatgttcagcga
cagctggcattcaagaggggccccattctacagtttttgttttctcagat
gagcattccaagagcaaaggtttcaactcaccaccagagggcagtgctat
tcactcccagaacaccagctgtgtgaggctgaagcctaggccagcagggc
tttccagtaaaaccccctccccaaccccatagagcaggtctggggcacag
ggcttgccccgctgggaggagaagtggtgtggctaggcttgtgtgggaag
cctgggagcctgaatgtcccaggttctggagcacaccctatgccttcctt
caggtagtcacttccgtctccgtctgtagagcagaaaaccagcaccctac
aaggtggcagagctgcagaaagaatcgccacgtggaagacaggatttgga
catctctggatcccaagccaaacaccatcttgtcagggacttctctggag
cagcctggtggaagttgcctgtactggcttggcactatggtggtgcaggc
cggcgatcccagcacttaggaggcacaggtaggctgtcagctcaaggttg
tcctgactgtagagtaagtttgaggccaactcgggctaagtgagaccttg
tctcataaaagtaaaacatacacacaccggaacgtgaaaactcccatagg
taccaggccggctggcacagcatgggtcttagacaccgaacattcacagg
tcacactctgctgtttaatgactaaacctaaacaggtctcagactctgga
gggacactgcacacacacaagtgagatttccacaggagtagacatttggc
atcttcaacctcacagatgctgagaagccaaagttcccttccaggggttg
gtcaaagcccatcctttccgtctttggaggagccaaagccatgcacaaga
gctgagctgtggacatctcacccccctgagcctgtgctactaaggcactc
aagacgggattcaacaggggacaggatgctctgacctgcccaccctaaaa

gaattccaggccagcgtgactacatggtgagtttcaggccagctaggact
acatagtcagaccctgtcttaaagcgggtgggtggcacatgcctgatacc
cactggcttgcctgttggagagcaaggtcccacagctggctttgaaagac
tgtaatactcaggaggtagacacaggagggccagggccagttcaaggctg
gtctgggctaataaattaccattcatcatagggacaatgtgctggagagt
accaggtgactgttgctagcaaaagattaattttggaaagccatttccag
aatgttctttgaagacttggttgttccttcagaaaggactttagatctga
accaggtatctctttggctctgacactcttaacaaagcaggtgacatggc
tccaaaccagggagtgggctgtaattgctatcctggtactggggttgcag
agacgttcttaattcacaagatcagaacagtcacatgctcttgggctggg
tttctccaaataccagctccaaatattctggaaataccaactggcccagg
caccctcagcgcccccttgccctggccacacccaggccccaggcgccttg
gtgagagaatgtcgacccctagtggaagaaagcagaactgaagtagcatc
cctaagtgactatggaggaagcctaaggggctgggaaatccctcatctcc
cctcttcccctccagtatcagctttgtgagaccccaagtcacactcttaa
ctgctgctgctgggcagtagaatggctcaggggatggaggcagcagagtc
tttgtggctcccaaatcagagaatcaaagaaaggactctcaaattgctgc
tatcaaacatgagcactgtgttctgagaagtagtggtggctgggcagtga
atgtggcagctgtacctgggttttcagagttccagccagcctggctacat
agcagaaccctgtttctgcaaaaaattaaagtagactagctggagggaat
gatttctcctgactcctgccatcactttaaagaatcctcaatttccctag
tccctgcaatcttcctctgtggtccaatattgggagacaaccaccacggc
cagtagccctcgggtcataaagggaaccataagtcatctggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_30746508_30747621
seq2: B6Ng01-159D07.b_49_1148

seq1  GAATTCACCTGGTCTTATCTAAAATTTAAGTATTAACTGGGGCATTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGGTCTTATCTAAAATTTAAGTATTAACTGGGGCATTGGGG  50

seq1  TTGGGGTGACAATGACAGATGAAGGTCGCATCCAGCCTAATGTTCAGCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTGACAATGACAGATGAAGGTCGCATCCAGCCTAATGTTCAGCGA  100

seq1  CAGCTGGCATTCAAGAGGGGCCCCATTCTACAGTTTTTGTTTTCTCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGCATTCAAGAGGGGCCCCATTCTACAGTTTTTGTTTTCTCAGAT  150

seq1  GAGCATTCCAAGAGCAAAGGTTTCAACTCACCACCAGAGGGCAGTGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTCCAAGAGCAAAGGTTTCAACTCACCACCAGAGGGCAGTGCTAT  200

seq1  TCACTCCCAGAACACCAGCTGTGTGAGGCTGAAGCCTAGGCCAGCAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCCAGAACACCAGCTGTGTGAGGCTGAAGCCTAGGCCAGCAGGGC  250

seq1  TTTCCAGTAAAACCCCCTCCCCAACCCCATAGAGCAGGTCTGGGGCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTAAAACCCCCTCCCCAACCCCATAGAGCAGGTCTGGGGCACAG  300

seq1  GGCTTGCCCCGCTGGGAGGAGAAGTGGTGTGGCTAGGCTTGTGTGGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCCCCGCTGGGAGGAGAAGTGGTGTGGCTAGGCTTGTGTGGGAAG  350

seq1  CCTGGGAGCCTGAATGTCCCAGGTTCTGGAGCACACCCTATGCCTTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGCCTGAATGTCCCAGGTTCTGGAGCACACCCTATGCCTTCCTT  400

seq1  CAGGTAGTCACTTCCGTCTCCGTCTGTAGAGCAGAAAACCAGCACCCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGTCACTTCCGTCTCCGTCTGTAGAGCAGAAAACCAGCACCCTAC  450

seq1  AAGGTGGCAGAGCTGCAGAAAGAATCGCCACGTGGAAGACAGGATTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGCAGAGCTGCAGAAAGAATCGCCACGTGGAAGACAGGATTTGGA  500

seq1  CATCTCTGGATCCCAAGCCAAACACCATCTTGTCAGGGACTTCTCTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGGATCCCAAGCCAAACACCATCTTGTCAGGGACTTCTCTGGAG  550

seq1  CAGCCTGGTGGAAGTTGCCTGTACTGGCTTGGCACTATGGTGGTGCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTGGAAGTTGCCTGTACTGGCTTGGCACTATGGTGGTGCAGGC  600

seq1  CGGCGATCCCAGCACTTAGGAGGCACAGGTAGGCTGTCAGCTCAAGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGATCCCAGCACTTAGGAGGCACAGGTAGGCTGTCAGCTCAAGGTTG  650

seq1  TCCTGACTGTAGAGTAAGTTTGAGGCCAACTCGGGCTAAGTGAGACCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACTGTAGAGTAAGTTTGAGGCCAACTCGGGCTAAGTGAGACCTTG  700

seq1  TCTCATAAAAGTAAAACATACACACACCGGAACGTGAAAACTCCCATAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAAAAGTAAAACATACACACACCGGAACGTGAAAACTCCCATAGG  750

seq1  TACCAGGCCGGCTGGCACAGCATGGGTCTTAGACACCGAACATTCACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGCCGGCTGGCACAGCATGGGTCTTAGACACCGAACATTCACAGG  800

seq1  TCACACTCTGCTGTTTAATGACTAAACCTAAACAGGTCTCAGGACTCTGG  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCACACTCTGCTGTTTAATGACTAAACCTAAACAGGTCTCA-GACTCTGG  849

seq1  AGGGACACTGCACACACACAAGTGAGATTTTCCACAGGAGTAGACATTTG  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGGACACTGCACACACACAAGTGAGA-TTTCCACAGGAGTAGACATTTG  898

seq1  GCATCTTCAAACCTCACAGATGCTGAAGAAGCCAAAGTTCCCTTCCAGGG  950
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  GCATCTTC-AACCTCACAGATGCTG-AGAAGCCAAAGTTCCCTTCCAGGG  946

seq1  GTTGGTCAAAGCCCATCCTTTCCGTCTTTGGAGGAGCCAAAGCCATGCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCAAAGCCCATCCTTTCCGTCTTTGGAGGAGCCAAAGCCATGCAC  996

seq1  AAGGAGGCTGAGCTGTGGACATTCTCACCCCCCTGAGCCTGTGCTACCTA  1050
      |||   ||||||||||||||| |||||||||||||||||||||||| |||
seq2  AAG--AGCTGAGCTGTGGACA-TCTCACCCCCCTGAGCCTGTGCTA-CTA  1042

seq1  AGGCACTCAAAGGACGGTGGTATCAACAGGGGACAGGGATGCTCTGACCT  1100
      ||||||||||  ||||  ||  ||||||||||||| ||||||||||||||
seq2  AGGCACTCAA--GACG--GGATTCAACAGGGGACA-GGATGCTCTGACCT  1087

seq1  GCCCACCTCTAAAA  1114
      ||||||| ||||||
seq2  GCCCACC-CTAAAA  1100

seq1: chr2_30879788_30880953
seq2: B6Ng01-159D07.g_69_1211 (reverse)

seq1  TTCCAGATGGAGTCTAATGGGTACCTTATATGACACCGAGGGGCTACTGG  50
      ||||||||   | || |||| | |||| |||||| |||| ||||||||||
seq2  TTCCAGAT---GACTTATGGTTCCCTT-TATGAC-CCGA-GGGCTACTGG  44

seq1  GCGCTGGTTGGTTGTCTTCCCATATTTGGACACCAGAGGGAAGGACTGCA  100
       || ||| ||||||||| || ||| ||||||  ||||||  | || ||||
seq2  CCG-TGG-TGGTTGTCTCCCAATA-TTGGACCACAGAGG--AAGATTGCA  89

seq1  GGGACTAGGGAAA-TGAGGATTCTTTTTGAGTGATGGGCAGAGTCAGGAG  149
      ||||||||||||| ||||||||| |||  ||||||||   ||||||||||
seq2  GGGACTAGGGAAATTGAGGATTC-TTTAAAGTGATGGCAGGAGTCAGGAG  138

seq1  ACATCTATCCCTCCAAGCTTAGTCTACCTTTTAATTTTTTTGCAGAAACA  199
      | |||  ||||||| ||| ||||||||  ||||| |||||||||||||||
seq2  AAATCATTCCCTCC-AGC-TAGTCTAC--TTTAA-TTTTTTGCAGAAACA  183

seq1  GGGTTCTGCTATGTAGCCCAGGCTGGCCTGGAACTCCTGAAAACCCAGGT  249
      |||||||||||||||| ||||||||| |||||||| ||||||||||||| 
seq2  GGGTTCTGCTATGTAG-CCAGGCTGG-CTGGAACT-CTGAAAACCCAGG-  229

seq1  TACAGCTGCCACATTCACTGCCCAGCCACCACCTACTTTCTCAGAACACA  299
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  TACAGCTGCCACATTCACTGCCCAGCCACCA-CTAC-TTCTCAGAACACA  277

seq1  GTGCTCATGTTTGATAGCAGCAATTTGAGAGTCCTTTCTTTTGATTCTCT  349
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTGCTCATGTTTGATAGCAGCAATTTGAGAGTCCTTTC-TTTGATTCTCT  326

seq1  GATTTGGGAGCCACAAAGACTCTGCTGCCTCCATCCCCTGAGCCATTCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGGAGCCACAAAGACTCTGCTGCCTCCATCCCCTGAGCCATTCTA  376

seq1  CTGCCCAGCAGCAGCAGTTAAGAGTGTGACTTGGGGTCTCACAAAGCTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAGCAGCAGCAGTTAAGAGTGTGACTTGGGGTCTCACAAAGCTGA  426

seq1  TACTGGAGGGGAAGAGGGGAGATGAGGGATTTCCCAGCCCCTTAGGCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAGGGGAAGAGGGGAGATGAGGGATTTCCCAGCCCCTTAGGCTTC  476

seq1  CTCCATAGTCACTTAGGGATGCTACTTCAGTTCTGCTTTCTTCCACTAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGTCACTTAGGGATGCTACTTCAGTTCTGCTTTCTTCCACTAGG  526

seq1  GGTCGACATTCTCTCACCAAGGCGCCTGGGGCCTGGGTGTGGCCAGGGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGACATTCTCTCACCAAGGCGCCTGGGGCCTGGGTGTGGCCAGGGCA  576

seq1  AGGGGGCGCTGAGGGTGCCTGGGCCAGTTGGTATTTCCAGAATATTTGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCGCTGAGGGTGCCTGGGCCAGTTGGTATTTCCAGAATATTTGGA  626

seq1  GCTGGTATTTGGAGAAACCCAGCCCAAGAGCATGTGACTGTTCTGATCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTATTTGGAGAAACCCAGCCCAAGAGCATGTGACTGTTCTGATCTT  676

seq1  GTGAATTAAGAACGTCTCTGCAACCCCAGTACCAGGATAGCAATTACAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTAAGAACGTCTCTGCAACCCCAGTACCAGGATAGCAATTACAGC  726

seq1  CCACTCCCTGGTTTGGAGCCATGTCACCTGCTTTGTTAAGAGTGTCAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCCTGGTTTGGAGCCATGTCACCTGCTTTGTTAAGAGTGTCAGAG  776

seq1  CCAAAGAGATACCTGGTTCAGATCTAAAGTCCTTTCTGAAGGAACAACCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGATACCTGGTTCAGATCTAAAGTCCTTTCTGAAGGAACAACCA  826

seq1  AGTCTTCAAAGAACATTCTGGAAATGGCTTTCCAAAATTAATCTTTTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCAAAGAACATTCTGGAAATGGCTTTCCAAAATTAATCTTTTGCT  876

seq1  AGCAACAGTCACCTGGTACTCTCCAGCACATTGTCCCTATGATGAATGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGTCACCTGGTACTCTCCAGCACATTGTCCCTATGATGAATGGT  926

seq1  AATTTATTAGCCCAGACCAGCCTTGAACTGGCCCTGGCCCTCCTGTGTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTAGCCCAGACCAGCCTTGAACTGGCCCTGGCCCTCCTGTGTCT  976

seq1  ACCTCCTGAGTATTACAGTCTTTCAAAGCCAGCTGTGGGACCTTGCTCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGAGTATTACAGTCTTTCAAAGCCAGCTGTGGGACCTTGCTCTC  1026

seq1  CAACAGGCAAGCCAGTGGGTATCAGGCATGTGCCACCCACCCGCTTTAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGCAAGCCAGTGGGTATCAGGCATGTGCCACCCACCCGCTTTAAG  1076

seq1  ACAGGGTCTGACTATGTAGTCCTAGCTGGCCTGAAACTCACCATGTAGTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTCTGACTATGTAGTCCTAGCTGGCCTGAAACTCACCATGTAGTC  1126

seq1  ACGCTGGCCTGGAATTC  1166
      |||||||||||||||||
seq2  ACGCTGGCCTGGAATTC  1143