BAC Information

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BAC

Clone NameB6Ng01-159D20
Chromosome2 (Build37)
Map Location 55,536,242 - 55,537,327
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt13, LOC666936, Kcnj3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159D20.bB6Ng01-159D20.g
ACCDH952960DH952961
length5491,087
definitionDH952960|Mus musculus domesticus DNA, BAC clone: B6Ng01-159D20, 5' end.DH952961|Mus musculus domesticus DNA, BAC clone: B6Ng01-159D20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tatcagacattcaaagaagagctaacaacgttaaactattccatacaata
gtaacagaaaaagcattatctaattcattctatgaaccaatagttactct
gatacataaaccacacaaagacccaacaaagaaagagaacttcagaactt
catgaatattgatgcaaaaatactcaacaaaattcttgccaagaacacat
caaaaccatcattcaccatgattaagtagatttcattcctgggatgctgg
gatggtttaatatacaggtattattcagctattaaaaatgagaacatcat
gaattctgcaggaaaatgattggaactagaagatatcatcctgaatgagg
taatccagactcaaagtgacatacatggcatgtactcactaattagtgga
tatcagccaaaagagtacagaatacctaggatacaacccacagaatttaa
gaattttaataagtagaaaggccaagtgaagatgattcaatctcactttg
tagggtgaagaaaacaatcaagggagatagagggaggaagggatttgtt

gaattctgttatgtctatgttctctgtgtaattatgtctaatttggtcag
catgtggacaaaacccttgcttctatacaggagtactttaaaagcagata
tttttgaattgtatcttgagttttgttttatcaacaccaatggtgtgtat
ttacataagcattcacttttctgacttgaactgttagcaagctacaagga
attttaaatcaaaccagaaaaattctaatttttctcatcagtgagaaaaa
actaatgaagtagattatatagattggccaagatagactgcaattattct
aagtcaattattcatttagcatttctttttatatatctcaaatagggtat
atttattattcatcataaatgacctagttcctatttgtacaattgaatta
cagaccaattcttctgtcaattttaaacaaatacaatatatttttattct
atcttgcatttcaatatgagataatattctctaacacttaaaatgttctt
gtgatgaataaggagctttatcccctttaaaatcccccaaaactaataga
taattaatttaggatgctcagtattcattcatccagtattttaagaacta
agacttgaataataatataagtacttgatcatttttgtagtaatgataga
gttagagtttataggttatgggacaaacatatgaaaaataaggaccagtt
gctttaagcagccagagaaatcacaaaccaaactaactgaagtcagcact
ttgaaagaagaggtgggaaggatcaggaatttgagtctaatttcatctgc
atagtgagtttgggatgctttagctacctatattataccgtcctcaaata
caagcagctcccaagaaaacaaggagatatatcttgcaaatcaatattac
cttgcaaatcaagtgattattttttaaaagaaaagcagtcaggatttaaa
gaaaattgtaattctcatacacatgtgctaagatgtaaatttttcactgg
ccaatggtagctcacggccttttaatcccagcactgggagcaaagggcag
tagatttttggtttggaggccagctggctacaaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_55536242_55537327
seq2: B6Ng01-159D20.g_66_1152

seq1  GAATTCTGTTATGTCTATGTTCTCTGTGTAATTATGTCTAATTTGGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTATGTCTATGTTCTCTGTGTAATTATGTCTAATTTGGTCAG  50

seq1  CATGTGGACAAAACCCTTGCTTCTATACAGGAGTACTTTAAAAGCAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGACAAAACCCTTGCTTCTATACAGGAGTACTTTAAAAGCAGATA  100

seq1  TTTTTGAATTGTATCTTGAGTTTTGTTTTATCAACACCAATGGTGTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAATTGTATCTTGAGTTTTGTTTTATCAACACCAATGGTGTGTAT  150

seq1  TTACATAAGCATTCACTTTTCTGACTTGAACTGTTAGCAAGCTACAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAAGCATTCACTTTTCTGACTTGAACTGTTAGCAAGCTACAAGGA  200

seq1  ATTTTAAATCAAACCAGAAAAATTCTAATTTTTCTCATCAGTGAGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATCAAACCAGAAAAATTCTAATTTTTCTCATCAGTGAGAAAAA  250

seq1  ACTAATGAAGTAGATTATATAGATTGGCCAAGATAGACTGCAATTATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGAAGTAGATTATATAGATTGGCCAAGATAGACTGCAATTATTCT  300

seq1  AAGTCAATTATTCATTTAGCATTTCTTTTTATATATCTCAAATAGGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAATTATTCATTTAGCATTTCTTTTTATATATCTCAAATAGGGTAT  350

seq1  ATTTATTATTCATCATAAATGACCTAGTTCCTATTTGTACAATTGAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATTCATCATAAATGACCTAGTTCCTATTTGTACAATTGAATTA  400

seq1  CAGACCAATTCTTCTGTCAATTTTAAACAAATACAATATATTTTTATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAATTCTTCTGTCAATTTTAAACAAATACAATATATTTTTATTCT  450

seq1  ATCTTGCATTTCAATATGAGATAATATTCTCTAACACTTAAAATGTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCATTTCAATATGAGATAATATTCTCTAACACTTAAAATGTTCTT  500

seq1  GTGATGAATAAGGAGCTTTATCCCCTTTAAAATCCCCCAAAACTAATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAATAAGGAGCTTTATCCCCTTTAAAATCCCCCAAAACTAATAGA  550

seq1  TAATTAATTTAGGATGCTCAGTATTCATTCATCCAGTATTTTAAGAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTTAGGATGCTCAGTATTCATTCATCCAGTATTTTAAGAACTA  600

seq1  AGACTTGAATAATAATATAAGTACTTGATCATTTTTGTAGTAATGATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGAATAATAATATAAGTACTTGATCATTTTTGTAGTAATGATAGA  650

seq1  GTTAGAGTTTATAGGTTATGGGACAAACATATGAAAAATAAGGACCAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGTTTATAGGTTATGGGACAAACATATGAAAAATAAGGACCAGTT  700

seq1  GCTTTAAGCAGCCAGAGAAATCACAAACCAAACTAACTGAAGTCAGCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAGCAGCCAGAGAAATCACAAACCAAACTAACTGAAGTCAGCACT  750

seq1  TTGAAAGAAGAGGT-GGAAGGATCAGGAATTTGAGTCTAATTTCATCTGC  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGAAAGAAGAGGTGGGAAGGATCAGGAATTTGAGTCTAATTTCATCTGC  800

seq1  ATAGTGAGTTT-GGATGCTTTAGCTACCTATATTATACCGT-CTCAAATA  847
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  ATAGTGAGTTTGGGATGCTTTAGCTACCTATATTATACCGTCCTCAAATA  850

seq1  C-AGCAGCTCCCAAGAAAACAAGGAGATATTATCTTGCAAATCAATATTA  896
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAGCAGCTCCCAAGAAAACAAGGAGATA-TATCTTGCAAATCAATATTA  899

seq1  CCTTGCAAATCAAGTGATTATTTTTTAAAAGAAAAGCAGTCAAGATTTAA  946
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCTTGCAAATCAAGTGATTATTTTTTAAAAGAAAAGCAGTCAGGATTTAA  949

seq1  AGAAAAATGT-ATTCTCATACACATGTGCTAAGAATGTAAATTTTTCACC  995
      |||||| ||| |||||||||||||||||||||| ||||||||||||||| 
seq2  AGAAAATTGTAATTCTCATACACATGTGCTAAG-ATGTAAATTTTTCACT  998

seq1  TGGCAATGGTAGCTCACG--CCTTTAATCCCAGCACTTGGGAAGCAAAGG  1043
       | |||||||||||||||  | |||||||||||||||  || ||||||||
seq2  GGCCAATGGTAGCTCACGGCCTTTTAATCCCAGCACT--GGGAGCAAAGG  1046

seq1  CAGGTAGATTTCTGAGTTTGAGGCCAGCCTGGCCTACAAAGTA  1086
         |||||||| ||  || |||||||| |||| ||||||||||
seq2  GCAGTAGATTTTTGGTTTGGAGGCCAG-CTGG-CTACAAAGTA  1087


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