BAC Information

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BAC

Clone NameB6Ng01-160L22
Chromosome2 (Build37)
Map Location 116,396,408 - 116,549,272
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik, LOC433464
Downstream geneTmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160L22.bB6Ng01-160L22.g
ACCDH954039DH954040
length1,1251,143
definitionDH954039|Mus musculus domesticus DNA, BAC clone: B6Ng01-160L22, 5' end.DH954040|Mus musculus domesticus DNA, BAC clone: B6Ng01-160L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,396,408 - 116,397,566)(116,548,111 - 116,549,272)
sequence
gaattcagttagaaacatctcactgtaatagagggtttaggacacttact
ttaggacatgttaggatagtcagcattactataaatatcagtccttgtcg
catggcagcaagccagacagagatgtcgccaactcacacctcagtattca
aatacaagatatttgctaatgtttttcatctaaatagcacaacacagaaa
aaaatgggaaatgtatctcctgtgatctgaatagactataatggcctcat
cagttgaagaattggggttctgacttgtgcattaaggctcacgaaatgac
attgttttcactaaagagaaaacaggaaggctttaaaaaaattgttttgc
tagtccaagttatttttaatcaggatgatccaatgagtgtgaaacactga
atacgtgttattggtaggaaacacctttggtcacagggtcacccaatatc
cagaataaacaatacctttgggaaacaccaaggcaaggggtctgtgatga
gggtaagggatgcactgccctctctggcagatgacattttctcgggctga
atgtatggtagccagatgtttctagcaatttcagtgatgtaaagaattag
ttccctaagtaatctacaatgattacttctttaaaaatatgggccccttt
ttgatacagtaagtctgtctcagagacatggagtcttagacttttcctct
ttgttgctaaatgagaacaatagttcccaggagtgcctacctacctcaga
cacccatgcaaggaaagggttattcttttctttttactgtaatgtaaaca
aatatatatgctcacatatatgaaaatatacaagcatatcatgcttctaa
atgtccttctaaaggacaccacctgtatcctttgtctcagaaaaaaaaaa
agaaagaaatatcccgagggcagtgacatacagttgtcatcatgactcac
aggactctagagagtcaatataccattaacaagtgatttcttctactttc
tactttgatttcccactcaagccagattcccatctttctagagtctacta
atctgctaatgggactcatgtgttctgaacaagcaccttggttcccttgc
ttgtactctgttgccaagtggtgtc
gaattcatgggtttattttgagctcaataggatgctgaagacagttggca
atgttttcacttgatagagatctgttgctctcaaatgcagccaatgcaga
gaatccaagtttagaattgatgaggatgatgccctcacctctttttgtgt
attgcactcaacagttctccatgacagaggtcctgtgatgaatccagaac
aatatactagccagagtcattgatttcctaatgttaaatggtgatgcttc
attggatgcttgataactaataacacttgcataccaacaagaacagatca
aaactccgagagatggtgttagcgcagctgggtagagcttacagggaggg
ttgagacagcattattgtggttactgttagaatgcctgtgaaacttgcac
ctggggatgcataaaccttgggcaaggttttacagtgtaggagattggtg
atccaacctttttttgtttgtttgttttttgttttttgagacagggtttc
tctgtgtgtagccctggctgtcttggaactcactttgtagaccaggctag
tttcgaactcagaaatctgcctgcctctgcctcctgagtgctgggaataa
aggcatgtgccaccacctcccggctgtgatccaacatttttgtatattta
ttataaatatctatatttataaatgtaaacagttatgtataaatgtaaac
agttgcccctaccatattctacttgattccatgtggacatacttatatat
agtatgtttttagttatacacagcaaagtcaagcatgggcttgaaatcct
cctgtttctgcctcctgagtgctaagacaacgtgcatatgccaccaaacc
ctggtcagtgtttcattatgtgcctggatgcatctgacacaaccactcct
ataactgcacatcatagaagtgtcattttctttctgatgagatatgtaaa
tatttatatttataaaaagcatgtacatgtgtgtgtgagtaaatgcagac
tctgaatttgcaaatttgcctatatctgagattaattctaaacttaaaat
cagtatcctgggtgctaggaaaatataattcacacaggtgtgggcatatc
agctgaagttcccaagtataagtacctctatatatacatgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_116396408_116397566
seq2: B6Ng01-160L22.b_46_1170

seq1  GAATTCAGTTAGAAACATCTCACTGTAATAGAGGGTTTAGGACACTTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAGAAACATCTCACTGTAATAGAGGGTTTAGGACACTTACT  50

seq1  TTAGGACATGTTAGGATAGTCAGCATTACTATAAATATCAGTCCTTGTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACATGTTAGGATAGTCAGCATTACTATAAATATCAGTCCTTGTCG  100

seq1  CATGGCAGCAAGCCAGACAGAGATGTCGCCAACTCACACCTCAGTATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGCAAGCCAGACAGAGATGTCGCCAACTCACACCTCAGTATTCA  150

seq1  AATACAAGATATTTGCTAATGTTTTTCATCTAAATAGCACAACACAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAGATATTTGCTAATGTTTTTCATCTAAATAGCACAACACAGAAA  200

seq1  AAAATGGGAAATGTATCTCCTGTGATCTGAATAGACTATAATGGCCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGAAATGTATCTCCTGTGATCTGAATAGACTATAATGGCCTCAT  250

seq1  CAGTTGAAGAATTGGGGTTCTGACTTGTGCATTAAGGCTCACGAAATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAAGAATTGGGGTTCTGACTTGTGCATTAAGGCTCACGAAATGAC  300

seq1  ATTGTTTTCACTAAAGAGAAAACAGGAAGGCTTTAAAAAAATTGTTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTCACTAAAGAGAAAACAGGAAGGCTTTAAAAAAATTGTTTTGC  350

seq1  TAGTCCAAGTTATTTTTAATCAGGATGATCCAATGAGTGTGAAACACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCAAGTTATTTTTAATCAGGATGATCCAATGAGTGTGAAACACTGA  400

seq1  ATACGTGTTATTGGTAGGAAACACCTTTGGTCACAGGGTCACCCAATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTGTTATTGGTAGGAAACACCTTTGGTCACAGGGTCACCCAATATC  450

seq1  CAGAATAAACAATACCTTTGGGAAACACCAAGGCAAGGGGTCTGTGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAAACAATACCTTTGGGAAACACCAAGGCAAGGGGTCTGTGATGA  500

seq1  GGGTAAGGGATGCACTGCCCTCTCTGGCAGATGACATTTTCTCGGGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGGGATGCACTGCCCTCTCTGGCAGATGACATTTTCTCGGGCTGA  550

seq1  ATGTATGGTAGCCAGATGTTTCTAGCAATTTCAGTGATGTAAAGAATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGTAGCCAGATGTTTCTAGCAATTTCAGTGATGTAAAGAATTAG  600

seq1  TTCCCTAAGTAATCTACAATGATTACTTCTTTAAAAATATGGGCCCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAAGTAATCTACAATGATTACTTCTTTAAAAATATGGGCCCCTTT  650

seq1  TTGATACAGTAAGTCTGTCTCAGAGACATGGAGTCTTAGACTTTTCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACAGTAAGTCTGTCTCAGAGACATGGAGTCTTAGACTTTTCCTCT  700

seq1  TTGTTGCTAAATGAGAACAATAGTTCCCAGGAGTGCCTACCTACCTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTAAATGAGAACAATAGTTCCCAGGAGTGCCTACCTACCTCAGA  750

seq1  CACCCATGCAAGGAAAGGGTTATTCTTTTCTTTTTACTGTAATGTAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATGCAAGGAAAGGGTTATTCTTTTCTTTTTACTGTAATGTAAACA  800

seq1  AATATATATGCTCACATATATGAAAATATACAAGCATATCATGCTTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATGCTCACATATATGAAAATATACAAGCATATCATGCTTCTAA  850

seq1  ATGTCCTTCTAAAGGACACCACCTGTATCCTTTGTCTCAGGAAAAAAAAA  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGTCCTTCTAAAGGACACCACCTGTATCCTTTGTCTCA-GAAAAAAAAA  899

seq1  AAGAAAGAAATATCCCGAGGGCAGTGACATACCAGGTTGTCATCAATGAA  950
      ||||||||||||||||||||||||||||||||   ||||||||| ||| |
seq2  AAGAAAGAAATATCCCGAGGGCAGTGACATAC--AGTTGTCATC-ATG-A  945

seq1  CTCACCAGGACTCTAGAAGAAGTCCAATAATACCATTAAACAAGTTGATT  1000
      |||| ||||||||||||   ||| |||| |||||||| |||||| |||||
seq2  CTCA-CAGGACTCTAGA--GAGT-CAAT-ATACCATT-AACAAG-TGATT  988

seq1  TCCTCTACTTTCTACTTTGGAATTTCCCACTCAAGCCAGAATTCCCATCT  1050
      || ||||||||||||||||  |||||||||||||||||| ||||||||||
seq2  TCTTCTACTTTCTACTTTG--ATTTCCCACTCAAGCCAG-ATTCCCATCT  1035

seq1  TTCTAGGAGTCTTACTAAATTCCTGCTAAATTGGGACTCATGTGTTTCTT  1100
      ||||| ||||| ||||||    |||||||  ||||||||||||| |||| 
seq2  TTCTA-GAGTC-TACTAA---TCTGCTAA--TGGGACTCATGTG-TTCT-  1076

seq1  GAAACAAGCACCCTTTGAGTTTCCTTTTGGCTTGGTTACTCTGTTGCAAA  1150
        ||||||||||  ||| ||| ||||   |||||  ||||||||||| ||
seq2  -GAACAAGCACC--TTG-GTTCCCTT---GCTTG--TACTCTGTTGCCAA  1117

seq1  GTTGGTGTC  1159
      | |||||||
seq2  G-TGGTGTC  1125

seq1: chr2_116548111_116549272
seq2: B6Ng01-160L22.g_68_1210 (reverse)

seq1  TTACATGTATAAATAAGAAGGTACATTATTAACTTGGTGAGCCTCAGCTG  50
      ||||||||||| |||   |||||| ||||  |||||| || | |||||||
seq2  TTACATGTATATATA--GAGGTAC-TTAT--ACTTGG-GAACTTCAGCTG  44

seq1  GTAGTGCACACACCTG-GTGACTCATATTTTTCACTAAAGCACCACAGAT  99
       || ||| |||||||| |||| | ||||||| |     ||||||   |||
seq2  ATA-TGCCCACACCTGTGTGAATTATATTTTCC----TAGCACCCAGGAT  89

seq1  ACTGATTTTAAGGTTAGAAGTAAATCTCAG-TATAGGCAAATTTGCAAAT  148
      |||||||||||| |||||| | |||||||| |||||||||||||||||||
seq2  ACTGATTTTAAGTTTAGAA-TTAATCTCAGATATAGGCAAATTTGCAAAT  138

seq1  ACAGAGTCTGCATTTTACTCACACACACATGTACATGCCTTTTTATAAAT  198
       ||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  TCAGAGTCTGCA-TTTACTCACACACACATGTACATG-CTTTTTATAAAT  186

seq1  ATTAAATATTTAACAATATCTCAATCAGAAAGAAAATGACACTTCTATGA  248
      | ||||||||||   ||||||| |||||||||||||||||||||||||||
seq2  A-TAAATATTTA--CATATCTC-ATCAGAAAGAAAATGACACTTCTATGA  232

seq1  TTGTGCAGTTTATAGGAGTGGTTGTGTCAGATGCATCCAGGCACATAATG  298
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  -TGTGCAG-TTATAGGAGTGGTTGTGTCAGATGCATCCAGGCACATAATG  280

seq1  AAACACCTGACCAGGGTTTGGTGGCATATGCACGTTGTCTTAGCACTCAG  348
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACA-CTGACCAGGGTTTGGTGGCATATGCACGTTGTCTTAGCACTCAG  329

seq1  GAGGCAGAAACAGGAGGATTTCAAGCCCATGCTTGACTTTGCTGTGTATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAAACAGGAGGATTTCAAGCCCATGCTTGACTTTGCTGTGTATA  379

seq1  ACTAAAAACATACTATATATAAGTATGTCCACATGGAATCAAGTAGAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAACATACTATATATAAGTATGTCCACATGGAATCAAGTAGAATA  429

seq1  TGGTAGGGGCAACTGTTTACATTTATACATAACTGTTTACATTTATAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGGGCAACTGTTTACATTTATACATAACTGTTTACATTTATAAAT  479

seq1  ATAGATATTTATAATAAATATACAAAAATGTTGGATCACAGCCGGGAGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATATTTATAATAAATATACAAAAATGTTGGATCACAGCCGGGAGGT  529

seq1  GGTGGCACATGCCTTTATTCCCAGCACTCAGGAGGCAGAGGCAGGCAGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACATGCCTTTATTCCCAGCACTCAGGAGGCAGAGGCAGGCAGAT  579

seq1  TTCTGAGTTCGAAACTAGCCTGGTCTACAAAGTGAGTTCCAAGACAGCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTCGAAACTAGCCTGGTCTACAAAGTGAGTTCCAAGACAGCCA  629

seq1  GGGCTACACACAGAGAAACCCTGTCTCAAAAAACAAAAAACAAACAAACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACACACAGAGAAACCCTGTCTCAAAAAACAAAAAACAAACAAACA  679

seq1  AAAAAAGGTTGGATCACCAATCTCCTACACTGTAAAACCTTGCCCAAGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGTTGGATCACCAATCTCCTACACTGTAAAACCTTGCCCAAGGT  729

seq1  TTATGCATCCCCAGGTGCAAGTTTCACAGGCATTCTAACAGTAACCACAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATCCCCAGGTGCAAGTTTCACAGGCATTCTAACAGTAACCACAA  779

seq1  TAATGCTGTCTCAACCCTCCCTGTAAGCTCTACCCAGCTGCGCTAACACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTGTCTCAACCCTCCCTGTAAGCTCTACCCAGCTGCGCTAACACC  829

seq1  ATCTCTCGGAGTTTTGATCTGTTCTTGTTGGTATGCAAGTGTTATTAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCGGAGTTTTGATCTGTTCTTGTTGGTATGCAAGTGTTATTAGTT  879

seq1  ATCAAGCATCCAATGAAGCATCACCATTTAACATTAGGAAATCAATGACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCATCCAATGAAGCATCACCATTTAACATTAGGAAATCAATGACT  929

seq1  CTGGCTAGTATATTGTTCTGGATTCATCACAGGACCTCTGTCATGGAGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAGTATATTGTTCTGGATTCATCACAGGACCTCTGTCATGGAGAA  979

seq1  CTGTTGAGTGCAATACACAAAAAGAGGTGAGGGCATCATCCTCATCAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGTGCAATACACAAAAAGAGGTGAGGGCATCATCCTCATCAATT  1029

seq1  CTAAACTTGGATTCTCTGCATTGGCTGCATTTGAGAGCAACAGATCTCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTGGATTCTCTGCATTGGCTGCATTTGAGAGCAACAGATCTCTA  1079

seq1  TCAAGTGAAAACATTGCCAACTGTCTTCAGCATCCTATTGAGCTCAAAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGAAAACATTGCCAACTGTCTTCAGCATCCTATTGAGCTCAAAAT  1129

seq1  AAACCCATGAATTC  1162
      ||||||||||||||
seq2  AAACCCATGAATTC  1143