BAC Information

Click to search

BAC

Clone NameB6Ng01-162C03
Chromosome2 (Build37)
Map Location 80,026,485 - 80,147,160
singlet/doubletdoublet
Overlap genePrdx6-rs1
Upstream geneItga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a, LOC668005
Downstream geneDnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162C03.bB6Ng01-162C03.g
ACCDH955048DH955049
length1,1121,234
definitionDH955048|Mus musculus domesticus DNA, BAC clone: B6Ng01-162C03, 5' end.DH955049|Mus musculus domesticus DNA, BAC clone: B6Ng01-162C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,146,043 - 80,147,160)(80,026,485 - 80,027,739)
sequence
gaattctaaataatgtaaagccaaagaaatggaccacttctttttttttt
tttttccattttttattaggtatttaactcatttacatttccaatgctat
accaaaaggcccccatagccacccacccccactcccctgcccacccactc
cccctttttggccctggtgttcccctgtactggggcatataaagtttgca
agtccaatgggcctctctttccagtgatggccgactaggccatcttttga
tatatatgcagctagagtcaagagctccggggcacttctttaattcactg
tccctatccaaacaattcatggtgtcatgtaaccagggtgtttagtggtc
tgccaaccatatggagtatgaaaatgggaatgtttgtaggacaccatata
gctgtacaatgagtaccgaggattccagttttcttaataactgtatgtga
ctgttaggcttttagtcatctttagagctccacagtgacactccacagtg
acacacttcctccaacaagaccacgcctcctaatagtgccactccttatg
gaccaagcatgcaagcacatgagtctgttgggaccattcctattgaaacg
gccacaggtagtatttcaaatctgagtatgtagtcacattcagctcaagt
gagaagaatgttcacatactagccagctacggctgcagtttagtccaaga
aacttcgagtgctagattttattctgtagattgcactgatggtgtcaaac
gtttttgttaagatggtggctccaggtgttgggaatctggacatgaccca
tgaatagtacatgccagataatttccaaagtgtagttcttaatatgcatg
aaaggacaggagtttgttgatgagattcacactagacatcctctccttct
tgaacagctgttgtcaaattcaaacactccaggagaagaaatggtgtgcc
cacaactggtattttggatttggcattagttcttcagagatgcagccatg
gtggaacaactcccaatggttaagctgcttggaaatgggcttcagtataa
gcctggtaaataagatagctcatgtccaatctggctgcccagctactgat
gtgttcagctcc
gaattccagaacaaccaaggctacacagagaaattgtctcaaaagtaaat
aaataaaaataaaaataaaattaagtgagactgcagagtctaagtgagaa
gcttctgtcctcatacacaaggttaaattcttatattcattaaatttgtc
agcaaactagaagactttacacacacacaaacacacacacacacacacac
acacgtttcaaataggctcttgcttgttaactgtattatcagtgcccatg
aggccttattagagtggaaatatgtcctgttcttccgttgctggagaaaa
ataaattcttaaaatacaacaattaagtaggcaattaaaaaaaaaacttc
ctagaaattttgtctttagaaatcctatttgtttcaaaaagcatcaaaat
gataatggattggctatttaaaacatttgctttgcctagaacattctgtc
tctagaaatcgtatttatttttttaaaaaggaagatagtggattggctat
ttaaaatgtttgctttggtaagaacatgataatgaaagaaaagtgaaggg
agggaaaaaaaagaaaaacaagggattgacctaggagacaggtgtaatgt
gctggaaaccacactgaagatggcccagagctagagctcttcgtgacaga
tgatgagcactctttcaatccaacagctggatcaacacccaaacccatga
atggatgagtcattagtgattctacctcttgtctctgagctggcctggct
ggcactaagtagaacagagatgagtgctaagaacctccagagtttgcagc
tggtgtctctttctgcctttatgttttggcatggtaaccgcacggtgaat
cacttttggattaaaaagccattttctcgcattcacactttcacatactt
cactttaactgcatagaagtttgaacaatgaggaaaagttgaacagtttc
taagcatctgtccgtgtttgcttcttctactttgatctactcaactgagt
ctcagtcatgttcaagtatctgttaataatgtcttctcattctctggaaa
cattattggagaattttgacctcatagttctagattagtgtaagaatgtt
ttgagaatttatgaaattaattcagtgtcttttaaacttcaaggctccca
cctttgcttttctcaataattgaacaataaggagctgaacttctgtcctg
ggttctccctggttaacagtgcgagctaaccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80146043_80147160
seq2: B6Ng01-162C03.b_46_1158 (reverse)

seq1  GGAGCTGACACACTATCAGTAGCTGTGCAGCCAGGATTTGACACTGAGCT  50
      |||||||| |||| ||||||||||| ||||||| |||| |||| ||||||
seq2  GGAGCTGA-ACAC-ATCAGTAGCTGGGCAGCCA-GATTGGACA-TGAGCT  46

seq1  ATCCTTATTACCAGGCTTATACTGAAGCCCATTTCCAAAGCAGCTTTAAC  100
      ||| |  ||||||||||||||||||||||||||||| ||||||| |||||
seq2  ATCTTATTTACCAGGCTTATACTGAAGCCCATTTCC-AAGCAGC-TTAAC  94

seq1  CA-TGGGAG-TGTTCCA-CATGGCTGCATCTTCTGAAGAACTAATGCCAA  147
      || |||||| ||||||| |||||||||||| |||||||||||||||||||
seq2  CATTGGGAGTTGTTCCACCATGGCTGCATC-TCTGAAGAACTAATGCCAA  143

seq1  ATCCAAAATA-CAGTTGTGGGCACACCATTTTCTTCTCCTGGAGTGTTTG  196
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  ATCCAAAATACCAGTTGTGGGCACACCA-TTTCTTCTCCTGGAGTGTTTG  192

seq1  AATTTGACAACAGCTGTTCAAGAAGGAGAGGATGTCTAGTGTGAATCTCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGACAACAGCTGTTCAAGAAGGAGAGGATGTCTAGTGTGAATCTCA  242

seq1  TCAACAAACTCCTGTCCTTTCATGCATATTAAGAACTAACACTTTGGAAA  296
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAACAAACTCCTGTCCTTTCATGCATATTAAGAACT-ACACTTTGGAAA  291

seq1  TTATCTGGCATGTACTATTCATGGGTCATGTCCAGATTCCCAACACCTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGGCATGTACTATTCATGGGTCATGTCCAGATTCCCAACACCTGG  341

seq1  AGCCACCATCTTAACAAAAACGTTTGACACCATCAGTGCAATCTACAGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCATCTTAACAAAAACGTTTGACACCATCAGTGCAATCTACAGAA  391

seq1  TAAAATCTAGCACTCGAAGTTTCTTGGACTAAACTGCAGCCGTAGCTGGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTAGCACTCGAAGTTTCTTGGACTAAACTGCAGCCGTAGCTGGC  441

seq1  TAGTATGTGAACATTCTTCTCACTTGAGCTGAATGTGACTACATACTCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGTGAACATTCTTCTCACTTGAGCTGAATGTGACTACATACTCAG  491

seq1  ATTTGAAATACTACCTGTGGCCGTTTCAATAGGAATGGTCCCAACAGACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAATACTACCTGTGGCCGTTTCAATAGGAATGGTCCCAACAGACT  541

seq1  CATGTGCTTGCATGCTTGGTCCATAAGGAGTGGCACTATTAGGAGGCGTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTTGCATGCTTGGTCCATAAGGAGTGGCACTATTAGGAGGCGTG  591

seq1  GTCTTGTTGGAGGAAGTGTGTCACTGTGGAGTGTCACTGTGGAGCTCTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTTGGAGGAAGTGTGTCACTGTGGAGTGTCACTGTGGAGCTCTAA  641

seq1  AGATGACTAAAAGCCTAACAGTCACATACAGTTATTAAGAAAACTGGAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACTAAAAGCCTAACAGTCACATACAGTTATTAAGAAAACTGGAAT  691

seq1  CCTCGGTACTCATTGTACAGCTATATGGTGTCCTACAAACATTCCCATTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGTACTCATTGTACAGCTATATGGTGTCCTACAAACATTCCCATTT  741

seq1  TCATACTCCATATGGTTGGCAGACCACTAAACACCCTGGTTACATGACAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTCCATATGGTTGGCAGACCACTAAACACCCTGGTTACATGACAC  791

seq1  CATGAATTGTTTGGATAGGGACAGTGAATTAAAGAAGTGCCCCGGAGCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTGTTTGGATAGGGACAGTGAATTAAAGAAGTGCCCCGGAGCTC  841

seq1  TTGACTCTAGCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTAGCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTG  891

seq1  GAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGG  941

seq1  AACACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGGTGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGGTGGG  991

seq1  TGGCTATGGGGGCCTTTTGGTATAGCATTGGAAATGTAAATGAGTTAAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGGGGGCCTTTTGGTATAGCATTGGAAATGTAAATGAGTTAAAT  1041

seq1  ACCTAATAAAAAATGGAAAAAAAAAAAAAAAGAAGTGGTCCATTTCTTTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATAAAAAATGGAAAAAAAAAAAAAAAGAAGTGGTCCATTTCTTTG  1091

seq1  GCTTTACATTATTTAGAATTCC  1118
      ||||||||||||||||||||||
seq2  GCTTTACATTATTTAGAATTCC  1113

seq1: chr2_80026485_80027739
seq2: B6Ng01-162C03.g_66_1299

seq1  GAATTCCAGAACAACCAAGGCTACACAGAGAAATTGTCTCAAAAGTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACAACCAAGGCTACACAGAGAAATTGTCTCAAAAGTAAAT  50

seq1  AAATAAAAATAAAAATAAAATTAAGTGAGACTGCAGAGTCTAAGTGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATAAAAATAAAATTAAGTGAGACTGCAGAGTCTAAGTGAGAA  100

seq1  GCTTCTGTCCTCATACACAAGGTTAAATTCTTATATTCATTAAATTTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTCCTCATACACAAGGTTAAATTCTTATATTCATTAAATTTGTC  150

seq1  AGCAAACTAGAAGACTTTACACACACACAAACACACACACACACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTAGAAGACTTTACACACACACAAACACACACACACACACACAC  200

seq1  ACACGTTTCAAATAGGCTCTTGCTTGTTAACTGTATTATCAGTGCCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTTTCAAATAGGCTCTTGCTTGTTAACTGTATTATCAGTGCCCATG  250

seq1  AGGCCTTATTAGAGTGGAAATATGTCCTGTTCTTCCGTTGCTGGAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTATTAGAGTGGAAATATGTCCTGTTCTTCCGTTGCTGGAGAAAA  300

seq1  ATAAATTCTTAAAATACAACAATTAAGTAGGCAATTAAAAAAAAAACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCTTAAAATACAACAATTAAGTAGGCAATTAAAAAAAAAACTTC  350

seq1  CTAGAAATTTTGTCTTTAGAAATCCTATTTGTTTCAAAAAGCATCAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATTTTGTCTTTAGAAATCCTATTTGTTTCAAAAAGCATCAAAAT  400

seq1  GATAATGGATTGGCTATTTAAAACATTTGCTTTGCCTAGAACATTCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGGATTGGCTATTTAAAACATTTGCTTTGCCTAGAACATTCTGTC  450

seq1  TCTAGAAATCGTATTTATTTTTTTAAAAAGGAAGATAGTGGATTGGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAATCGTATTTATTTTTTTAAAAAGGAAGATAGTGGATTGGCTAT  500

seq1  TTAAAATGTTTGCTTTGGTAAGAACATGATAATGAAAGAAAAGTGAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGTTTGCTTTGGTAAGAACATGATAATGAAAGAAAAGTGAAGGG  550

seq1  AGGGAAAAAAAAGAAAAACAAGGGATTGACCTAGGAGACAGGTGTAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAAAAAGAAAAACAAGGGATTGACCTAGGAGACAGGTGTAATGT  600

seq1  GCTGGAAACCACACTGAAGATGGCCCAGAGCTAGAGCTCTTCGTGACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAACCACACTGAAGATGGCCCAGAGCTAGAGCTCTTCGTGACAGA  650

seq1  TGATGAGCACTCTTTCAATCCAACAGCTGGATCAACACCCAAACCCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGCACTCTTTCAATCCAACAGCTGGATCAACACCCAAACCCATGA  700

seq1  ATGGATGAGTCATTAGTGATTCTACCTCTTGTCTCTGAGCTGGCCTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGAGTCATTAGTGATTCTACCTCTTGTCTCTGAGCTGGCCTGGCT  750

seq1  GGCACTAAGTAGAACAGAGATGAGTGCTAAGAACCTCCAGAGTTTGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTAAGTAGAACAGAGATGAGTGCTAAGAACCTCCAGAGTTTGCAGC  800

seq1  TGGTGTCTCTTTCTGCCTTTATGTTTTGGCATGGTAACCGCACGGTGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTCTTTCTGCCTTTATGTTTTGGCATGGTAACCGCACGGTGAAT  850

seq1  CACTTTTGGATTAAAAAGCCATTTTCTCGCATTCACACTTTCACATACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTGGATTAAAAAGCCATTTTCTCGCATTCACACTTTCACATACTT  900

seq1  CACTTTAACTGCATAGAAGTTTGAACAATTGAGGAAAAGTTGAACAGTTT  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACTTTAACTGCATAGAAGTTTGAACAA-TGAGGAAAAGTTGAACAGTTT  949

seq1  CTAAGCATCTGTTCCGTGTTTGCTTCTTCTACTTTGATCTACTCAACTGA  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCATCTG-TCCGTGTTTGCTTCTTCTACTTTGATCTACTCAACTGA  998

seq1  GTCTCAGTCATGTTCAAGTATCTGTTAATAATGTCTTCTTCATTCTCTTG  1050
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  GTCTCAGTCATGTTCAAGTATCTGTTAATAATGTCTTC-TCATTCTC-TG  1046

seq1  GAAACATTATTGGAG-ATTTTGACCTCAATAGTATCTAGGATTTTAGTGT  1099
      ||||||||||||||| ||||||||||| ||||| |||||    |||||||
seq2  GAAACATTATTGGAGAATTTTGACCTC-ATAGT-TCTAG---ATTAGTGT  1091

seq1  AAAGAATGTTATGAGATTTTATGATATTAAATTCAGTTGTCTTTCTAAAC  1149
       ||||||||| ||||| ||||||| ||| ||||||| ||||||| |||||
seq2  -AAGAATGTTTTGAGAATTTATGAAATT-AATTCAG-TGTCTTT-TAAAC  1137

seq1  TTCAAGGCTCCCACCTTTTTGC-TTTCTCAAATAGTGTTGAACAATAAGG  1198
      |||||||||||||||  ||||| ||||||||  |   |||||||||||||
seq2  TTCAAGGCTCCCACC--TTTGCTTTTCTCAATAA---TTGAACAATAAGG  1182

seq1  CAGCTGAGACATTCTGTCCTGGTGTTCTTCCCTGGTTAACAGTGCAAGCT  1248
       |||||| || ||||||||||| |||| ||||||||||||||||| ||||
seq2  -AGCTGA-AC-TTCTGTCCTGG-GTTC-TCCCTGGTTAACAGTGCGAGCT  1227

seq1  AAACATT  1255
      || ||||
seq2  AACCATT  1234