BAC Information

Click to search

BAC

Clone NameB6Ng01-162D17
Chromosome2 (Build37)
Map Location 131,772,428 - 131,941,534
singlet/doubletdoublet
Overlap genePrnd, Rassf2, Slc23a2, LOC626513
Upstream geneAtrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp
Downstream geneLOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162D17.bB6Ng01-162D17.g
ACCDH955121DH955122
length1,0311,023
definitionDH955121|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D17, 5' end.DH955122|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,772,428 - 131,773,455)(131,940,506 - 131,941,534)
sequence
gaattccaggtgttgcaaaaggaggcttcgcttggggctcggcttcccag
agcccacacacaccacgctcctccacctgttccctctcctccaggccttg
ctgaatccttaagcatgggtcatcctgtctgcatggtccgggatgacttg
gccttttccgtggtgactttcttttgtacccggccttcctcccctctgtg
tctctcacactgcttgtcacttccactgactgttggttcagatcctgatg
caaaatcagattctttcccatgtgtcggttaaagtgaaatgaagacttag
ccgatcctttaaattgaggacgtccatgttggaagtggatgtcaccgtaa
gagtaccccagatgcctcaccaatggccagaaggccactcctaagtattt
gcccaacagaaatggaagctatctttaccaagacacctacacaagaactt
ttcattcacaaaagatgaacagaagtagattgtggtctgtttatatagcc
aaataccagcactgagaatccaaagagcatgtctctgaaatgacagtgtt
ggtgactctcatacacatgatgctgaacaaaagaagccagccataaagga
gaacctatcatgtgatttcatctatgctccatataaaaggacaagggagg
ttagcctggtattagaagtcaagacgttgggtggcatcgaggaccctagt
gtttgaaataatagcatagataagtagaggtataaagtttgttttttaaa
gttactaaattgtgtctttgtgtttgtacattttttctatatgctatact
ttcaataagagctcttgaaatgttgaatccctagttcctgctcttgccag
atctagtttccaagaagtgaccttggcattttctgtctgctctgcagctt
ggcaattgctttctccgccaagctaacttgcatagaactttgatctgaga
ccaatgcttatcacagatccagtctcgggcaccaaccttagctgttcctg
gcccattacctctaccgcccttaaacacttt
gaattcagctggagataaattgtgtaaaaaggtgacatttttaatcacac
atttacaatgtgttaattaaatctcattttaattttttaaaaaatatttt
aaattattaagtttccttcccctacagcttgtataacattccattagtct
gctacctcaaccctggccttcatgttctaggtcattaagtcgtcaggtat
accaccctcccccaacttcctgccctcccacctggtgtaggctgaaggtc
gatgtctgtagacatcacagcgagattatgtgagattatgcagtagtcac
ctcaatgaacaacgctatatacccacagctgtgaccccctcttcccttac
aggttttgaatacaggttaatttgaagtatcctgtttgattactagaaat
gaagtaggtgcctacaggagggggcatcgcgcagagcaagcaggtttttt
cccactggattaccttacttcagtcgcctgctgctgcgcatgctttagag
agggcctctggctctcaagcatgtgaatgttggttcccactctccttccc
gccctgtcccaactgggatactcggatagggtctgagcgggaggaggccg
ttcgtgtgggtgaagtaacttccaccttactgtttcagttttccaagtgc
tcgcaggcacacattcagtcatacataccttgagatttatagatcagtgg
gcagcgttaaatgatgccaaggcaaacagtgccccattcttctcccgtag
atcctggcctttcagtgtgaaccttcacctgccttcagcttctccccact
gcactcccaggtttgggttactttgcccagattctgtttctacattattt
tagtgtgcaacttgattgtcttgaaatatgatcattatagttttcgtgca
tataaaatgtttatgagctgggggacagctcagtaatacttgtctggtgt
gcttgaatcccaggcacttaggagcatgggactatgatgttcttccttcc
ttcctttatttctgctgtgctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_131772428_131773455
seq2: B6Ng01-162D17.b_40_1070

seq1  GAATTCCAGGTGTTGCAAAAGGAGGCTTCGCTTGGGGCTCGGCTTCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGTTGCAAAAGGAGGCTTCGCTTGGGGCTCGGCTTCCCAG  50

seq1  AGCCCACACACACCACGCTCCTCCACCTGTTCCCTCTCCTCCAGGCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACACACACCACGCTCCTCCACCTGTTCCCTCTCCTCCAGGCCTTG  100

seq1  CTGAATCCTTAAGCATGGGTCATCCTGTCTGCATGGTCCGGGATGACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCCTTAAGCATGGGTCATCCTGTCTGCATGGTCCGGGATGACTTG  150

seq1  GCCTTTTCCGTGGTGACTTTCTTTTGTACCCGGCCTTCCTCCCCTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCCGTGGTGACTTTCTTTTGTACCCGGCCTTCCTCCCCTCTGTG  200

seq1  TCTCTCACACTGCTTGTCACTTCCACTGACTGTTGGTTCAGATCCTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACACTGCTTGTCACTTCCACTGACTGTTGGTTCAGATCCTGATG  250

seq1  CAAAATCAGATTCTTTCCCATGTGTCGGTTAAAGTGAAATGAAGACTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCAGATTCTTTCCCATGTGTCGGTTAAAGTGAAATGAAGACTTAG  300

seq1  CCGATCCTTTAAATTGAGGACGTCCATGTTGGAAGTGGATGTCACCGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATCCTTTAAATTGAGGACGTCCATGTTGGAAGTGGATGTCACCGTAA  350

seq1  GAGTACCCCAGATGCCTCACCAATGGCCAGAAGGCCACTCCTAAGTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACCCCAGATGCCTCACCAATGGCCAGAAGGCCACTCCTAAGTATTT  400

seq1  GCCCAACAGAAATGGAAGCTATCTTTACCAAGACACCTACACAAGAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACAGAAATGGAAGCTATCTTTACCAAGACACCTACACAAGAACTT  450

seq1  TTCATTCACAAAAGATGAACAGAAGTAGATTGTGGTCTGTTTATATAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCACAAAAGATGAACAGAAGTAGATTGTGGTCTGTTTATATAGCC  500

seq1  AAATACCAGCACTGAGAATCCAAAGAGCATGTCTCTGAAATGACAGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCAGCACTGAGAATCCAAAGAGCATGTCTCTGAAATGACAGTGTT  550

seq1  GGTGACTCTCATACACATGATGCTGAACAAAAGAAGCCAGCCATAAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTCTCATACACATGATGCTGAACAAAAGAAGCCAGCCATAAAGGA  600

seq1  GAACCTATCATGTGATTTCATCTATGCTCCATATAAAAGGACAAGGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTATCATGTGATTTCATCTATGCTCCATATAAAAGGACAAGGGAGG  650

seq1  TTAGCCTGGTATTAGAAGTCAAGACGTTGGGTGGCATCGAGGACCCTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTGGTATTAGAAGTCAAGACGTTGGGTGGCATCGAGGACCCTAGT  700

seq1  GTTTGAAATAATAGCATAGATAAGTAGAGGTATAAAGTTTGTTTTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAATAATAGCATAGATAAGTAGAGGTATAAAGTTTGTTTTTTAAA  750

seq1  GTTACTAAATTGTGTCTTTGTGTTTGTACA-TTTTTCTATATGCTATAC-  798
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  GTTACTAAATTGTGTCTTTGTGTTTGTACATTTTTTCTATATGCTATACT  800

seq1  TTCAATAAGAGCTCTTGAAATGTTGAATCCCTAGTTCCTGCTCTTGCCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAAGAGCTCTTGAAATGTTGAATCCCTAGTTCCTGCTCTTGCCAG  850

seq1  ATCTAG-TTCCAAGAAGTGACCTTGGCATTTTCCTGTCTGCTCTGCAGCT  897
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  ATCTAGTTTCCAAGAAGTGACCTTGGCATTTT-CTGTCTGCTCTGCAGCT  899

seq1  TGGCAATTGCTTTCTCCGCCAAAGCTAACTTGCATAGAACTTTGATTTGA  947
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  TGGCAATTGCTTTCTCCGCC-AAGCTAACTTGCATAGAACTTTGATCTGA  948

seq1  GACCAAGGCTTATCACAGATCCAGTCTCGGGCACCAACCTT-GCTGTTCT  996
      |||||| |||||||||||||||||||||||||||||||||| ||||||| 
seq2  GACCAATGCTTATCACAGATCCAGTCTCGGGCACCAACCTTAGCTGTTCC  998

seq1  TAGCCAATTACCTTTACAGCCC-TAAACACTTT  1028
      | ||| ||||||| ||| |||| ||||||||||
seq2  TGGCCCATTACCTCTACCGCCCTTAAACACTTT  1031

seq1: chr2_131940506_131941534
seq2: B6Ng01-162D17.g_69_1091 (reverse)

seq1  CCAGCACAGCAGAAAATAAAAGAAGGAAGGAAGAAACCTCATAGTCCCCT  50
      |||||||||||| ||||||| |||||||||||| ||| |||||||||| |
seq2  CCAGCACAGCAG-AAATAAAGGAAGGAAGGAAG-AACATCATAGTCCCAT  48

seq1  GCTCCCTAAGTGCCTGGGATTCAAGCACACCAGACAAGTATTACTGAGCT  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCT-CCTAAGTGCCTGGGATTCAAGCACACCAGACAAGTATTACTGAGCT  97

seq1  GTCCCCCAGCTCATTAAACATTTTATATGCACGAAAACTATAATGATCAT  150
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCAGCTCA-TAAACATTTTATATGCACGAAAACTATAATGATCAT  146

seq1  ATTTCAAAGACAATCAAGTTGCACACTTAAAATAAATGTAGAAACAGAAT  200
      ||||| |||||||||||||||||||| |||||| ||||||||||||||||
seq2  ATTTC-AAGACAATCAAGTTGCACAC-TAAAAT-AATGTAGAAACAGAAT  193

seq1  CTGGGCAAAGTAACCCAAACCTGGGAGTGCAGTGGGGAGAAGCTGAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAAAGTAACCCAAACCTGGGAGTGCAGTGGGGAGAAGCTGAAGGC  243

seq1  AGGTGAAGGTTCACACTGAAAGGCCAGGATCTACGGGAGAAGAATGGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAGGTTCACACTGAAAGGCCAGGATCTACGGGAGAAGAATGGGGC  293

seq1  ACTGTTTGCCTTGGCATCATTTAACGCTGCCCACTGATCTAT-AATCTCA  349
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTGTTTGCCTTGGCATCATTTAACGCTGCCCACTGATCTATAAATCTCA  343

seq1  AGGTATGTATGACTGAATGTGTGCCTGCGAGCACTTGGAAAACTGAAACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGTATGACTGAATGTGTGCCTGCGAGCACTTGGAAAACTGAAACA  393

seq1  GTAAGGTGGAAGTTACTTCACCCACACGAACGGCCTCCTCCCGCTCAGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGTGGAAGTTACTTCACCCACACGAACGGCCTCCTCCCGCTCAGAC  443

seq1  CCTATCCGAGTATCCCAGTTGGGACAGGGCGGGAAGGAGAGTGGGAACCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCGAGTATCCCAGTTGGGACAGGGCGGGAAGGAGAGTGGGAACCA  493

seq1  ACATTCACATGCTTGAGAGCCAGAGGCCCTCTCTAAAGCATGCGCAGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCACATGCTTGAGAGCCAGAGGCCCTCTCTAAAGCATGCGCAGCAG  543

seq1  CAGGCGACTGAAGTAAGGTAATCCAGTGGGAAAAAACCTGCTTGCTCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGACTGAAGTAAGGTAATCCAGTGGGAAAAAACCTGCTTGCTCTGC  593

seq1  GCGATGCCCCCTCCTGTAGGCACCTACTTCATTTCTAGTAATCAAACAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGCCCCCTCCTGTAGGCACCTACTTCATTTCTAGTAATCAAACAGG  643

seq1  ATACTTCAAATTAACCTGTATTCAAAACCTGTAAGGGAAGAGGGGGTCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCAAATTAACCTGTATTCAAAACCTGTAAGGGAAGAGGGGGTCAC  693

seq1  AGCTGTGGGTATATAGCGTTGTTCATTGAGGTGACTACTGCATAATCTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGGGTATATAGCGTTGTTCATTGAGGTGACTACTGCATAATCTCA  743

seq1  CATAATCTCGCTGTGATGTCTACAGACATCGACCTTCAGCCTACACCAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCTCGCTGTGATGTCTACAGACATCGACCTTCAGCCTACACCAGG  793

seq1  TGGGAGGGCAGGAAGTTGGGGGAGGGTGGTATACCTGACGACTTAATGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGGCAGGAAGTTGGGGGAGGGTGGTATACCTGACGACTTAATGAC  843

seq1  CTAGAACATGAAGGCCAGGGTTGAGGTAGCAGACTAATGGAATGTTATAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACATGAAGGCCAGGGTTGAGGTAGCAGACTAATGGAATGTTATAC  893

seq1  AAGCTGTAGGGGAAGGAAACTTAATAATTTAAAATATTTTTTAAAAAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTAGGGGAAGGAAACTTAATAATTTAAAATATTTTTTAAAAAATT  943

seq1  AAAATGAGATTTAATTAACACATTGTAAATGTGTGATTAAAAATGTCACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGATTTAATTAACACATTGTAAATGTGTGATTAAAAATGTCACC  993

seq1  TTTTTACACAATTTATCTCCAGCTGAATTC  1029
      ||||||||||||||||||||||||||||||
seq2  TTTTTACACAATTTATCTCCAGCTGAATTC  1023