BAC Information

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BAC

Clone NameB6Ng01-162D19
Chromosome2 (Build37)
Map Location 36,696,516 - 36,697,664
singlet/doubletsinglet
Overlap genenone
Upstream geneTtll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3
Downstream geneOlfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162D19.bB6Ng01-162D19.g
ACCDH955125DH955126
length1,1851,143
definitionDH955125|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D19, 5' end.DH955126|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccatctcacacctgtcaaaatggctaaaatcaaaaattcaggtgacag
cagatgctggcaagaatatggagaaagagaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggaggttcctca
gaaaattggacatagtactactcaggatcctgccatacctctcctgggca
tatatccagatgttccaaccggcaagaaggacacatgctcctctatgttc
atattagtcttatttataatagccagaagctggaaagaaccaagataccc
ctcaagagaggaatggatacagaaaatgtggtacatttacacaatggagt
actactcagttattaagaaaaatgaatgtatgaaattcctaggcaaatgg
atgtacctggagggcatcatcctgagtaaggtaacccaatcacaaaggaa
ctcacacaatatgtactcactgataagtcgatattagcccagaaacttag
gatacccaagatataagatacaatttgctaaacgcatgaaactccctaag
aatgaagaccaaagtgtggacactttgccccttttcagaattgggaacaa
aacacccatggaagagggtacagagacaaattttagatctgtgatgaaag
gatggaccatgtagagactgccatatccagggatccttcccataatcagc
ttccaaacgctgacaccattgcatacactagcaagattttgctgaaagga
cccagatagagctgtctcttgtgagataatgtcggggcctagcaaacaca
gaagtggatgctcacagtcagctattggatggatcacagggcccccaatg
gagggtctagagaaggtacccaaggagctaaagggatctccaaccctata
ggtgacattatgactaaccagaggtcttgactctagctgcatatgtatca
aagatgacctagtcagcatcactggaaagagagtccaatggacttgcaac
ttatatgcctcagttacagggacactcaggcaactaggaggcgtgtgtag
ggaaatgggggtcctggcggttggggtacatcttg
gaattctgcagagttacaccatacaacaagcctcacataagagggtgggt
gccacccttagggtgagaaacagctgggaactgagaaggagacaggctta
tataggctttcttaggaatagagttttccagagtagagatttccagtaat
gagattggtgagatttcaagccaagcccagaaattggtgggatttttgtg
cctaatttagagcaatttcacaatccttttaggacaggctgttggttaaa
gggaatggtcttttgaatgatagatgtccatatgtaaaagatataatgaa
tatgtgtagatacaaagaagtagagggagaagagaccaagtttaggtata
aaagattttcagatcatttgtttgtgcagtggcagaaagttgccaccatt
gaaaattgagaatgtcagtcttgtaactgtaaagaggccaagctgtttat
aataatggagtaaggctttaataagatcctagttcatagaagaagatagg
aagagtcacagaaattaatgcagctcctaagaagagaaggcaagcaaaga
ggaagggcttcaacagagaaagagtagcaagtgtcttaacttcagagttg
cctacatggtggagccctggaaggcttaacaggatggagaaaccttacca
agtaggtgaagagagacaaatagtgcagctggagggaagaagtaactgaa
gaaatagactctagaattttggaaccaaatatggatggtggcagaagtca
gcagaaacaaacattcatacacttcttgatagagtcaaggccctttcagc
tggccataccaacttcccagactcccaaagcctgagaacctccaggtctc
tgcttcaaatgtggtcaggtgggtcattcggcccaggtatgtccaaggcc
ttgcaaaccattctgatcatgaccaagtgccatcagagggacattaaaca
ttcattgctcccatatacttgtaccatggagaatcagactcagactcccc
ctctagccaacactcaagacttaggtagccattacattattaagggaatc
taactccttttcttctagataactagcaccatcttttcatctcattggat
ttgggggaccaactctcttctggtatctatggtctgagaatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_36696516_36697664
seq2: B6Ng01-162D19.g_66_1208

seq1  GAATTCTGCAGAGTTACACCATACAACAAGCCTCACATAAGAGGGTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGAGTTACACCATACAACAAGCCTCACATAAGAGGGTGGGT  50

seq1  GCCACCCTTAGGGTGAGAAACAGCTGGGAACTGAGAAGGAGACAGGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCTTAGGGTGAGAAACAGCTGGGAACTGAGAAGGAGACAGGCTTA  100

seq1  TATAGGCTTTCTTAGGAATAGAGTTTTCCAGAGTAGAGATTTCCAGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCTTTCTTAGGAATAGAGTTTTCCAGAGTAGAGATTTCCAGTAAT  150

seq1  GAGATTGGTGAGATTTCAAGCCAAGCCCAGAAATTGGTGGGATTTTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGGTGAGATTTCAAGCCAAGCCCAGAAATTGGTGGGATTTTTGTG  200

seq1  CCTAATTTAGAGCAATTTCACAATCCTTTTAGGACAGGCTGTTGGTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTTAGAGCAATTTCACAATCCTTTTAGGACAGGCTGTTGGTTAAA  250

seq1  GGGAATGGTCTTTTGAATGATAGATGTCCATATGTAAAAGATATAATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGGTCTTTTGAATGATAGATGTCCATATGTAAAAGATATAATGAA  300

seq1  TATGTGTAGATACAAAGAAGTAGAGGGAGAAGAGACCAAGTTTAGGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTAGATACAAAGAAGTAGAGGGAGAAGAGACCAAGTTTAGGTATA  350

seq1  AAAGATTTTCAGATCATTTGTTTGTGCAGTGGCAGAAAGTTGCCACCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTTCAGATCATTTGTTTGTGCAGTGGCAGAAAGTTGCCACCATT  400

seq1  GAAAATTGAGAATGTCAGTCTTGTAACTGTAAAGAGGCCAAGCTGTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGAGAATGTCAGTCTTGTAACTGTAAAGAGGCCAAGCTGTTTAT  450

seq1  AATAATGGAGTAAGGCTTTAATAAGATCCTAGTTCATAGAAGAAGATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGGAGTAAGGCTTTAATAAGATCCTAGTTCATAGAAGAAGATAGG  500

seq1  AAGAGTCACAGAAATTAATGCAGCTCCTAAGAAGAGAAGGCAAGCAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCACAGAAATTAATGCAGCTCCTAAGAAGAGAAGGCAAGCAAAGA  550

seq1  GGAAGGGCTTCAACAGAGAAAGAGTAGCAAGTGTCTTAACTTCAGAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCTTCAACAGAGAAAGAGTAGCAAGTGTCTTAACTTCAGAGTTG  600

seq1  CCTACATGGTGGAGCCCTGGAAGGCTTAACAGGATGGAGAAACCTTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATGGTGGAGCCCTGGAAGGCTTAACAGGATGGAGAAACCTTACCA  650

seq1  AGTAGGTGAAGAGAGACAAATAGTGCAGCTGGAGGGAAGAAGTAACTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTGAAGAGAGACAAATAGTGCAGCTGGAGGGAAGAAGTAACTGAA  700

seq1  GAAATAGACTCTAGAA-TTTGGAACCAAATATGGATGGTGGCAGAAGTCA  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAAATAGACTCTAGAATTTTGGAACCAAATATGGATGGTGGCAGAAGTCA  750

seq1  GCAGAAACAAACATTCATACACTTCTTGATAGAGTCAAGGCCCTTTCAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACAAACATTCATACACTTCTTGATAGAGTCAAGGCCCTTTCAGC  800

seq1  TGGCCATACCAACTTCCCAGACTCCCAAAGCCTGAGAACCTCCAGGTCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATACCAACTTCCCAGACTCCCAAAGCCTGAGAACCTCCAGGTCTC  850

seq1  TGCTTCAAATGTGGTCAGGTGGGTCATTCGGCCCAGGTATGTCCAAGGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAAATGTGGTCAGGTGGGTCATTCGGCCCAGGTATGTCCAAGGCC  900

seq1  TTGCAAACCATTCTGATCATGACCAAGGTGCCATCAAGAGGGACATTAAA  949
      |||||||||||||||||||||||||| |||||||| ||||||||||| ||
seq2  TTGCAAACCATTCTGATCATGACCAA-GTGCCATC-AGAGGGACATT-AA  947

seq1  ACATTCATTGCTCCCATATACCTTGTACCATGGAGAATCAGACTCAGACT  999
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACATTCATTGCTCCCATATA-CTTGTACCATGGAGAATCAGACTCAGACT  996

seq1  -CCCCTCTAGCCAACACTCAAAGACCTAGGTAGCCATTACATTATTAAGG  1048
       |||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  CCCCCTCTAGCCAACACTC-AAGACTTAGGTAGCCATTACATTATTAAGG  1045

seq1  GAATCTAACTCC-TTTCTTCTAGAT-ACTAGCACCA-CTTTTCAATCCCA  1095
      |||||||||||| |||||||||||| |||||||||| |||||| ||| ||
seq2  GAATCTAACTCCTTTTCTTCTAGATAACTAGCACCATCTTTTC-ATCTCA  1094

seq1  ATGGATTTTGGGGGACCAACCTCTCCTTCCTGTTATTCTATGGTCTGAGA  1145
       |||| ||||||||||||| |||||  | ||| || ||||||||||||||
seq2  TTGGA-TTTGGGGGACCAA-CTCTC--TTCTGGTA-TCTATGGTCTGAGA  1139

seq1  ATAG  1149
      ||||
seq2  ATAG  1143