BAC Information

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BAC

Clone NameB6Ng01-162O13
Chromosome10 (Build37)2 (Build37)
Map Location 104,053,552 - 104,054,35315,702,569 - 15,703,669
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162O13.bB6Ng01-162O13.g
ACCDH955628DH955629
length1,0381,093
definitionDH955628|Mus musculus domesticus DNA, BAC clone: B6Ng01-162O13, 5' end.DH955629|Mus musculus domesticus DNA, BAC clone: B6Ng01-162O13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,552 - 104,054,353)(15,702,569 - 15,703,669)
sequence
gaattcacaactgaggaatactgaaggactgagaagcacttgaaaaaatg
ttcaacatccttaatcaccagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgctggtg
ggattacaagcttgtacaaccactctggaaaccagtctggcggttcctca
gaaaattggacaaagtactactggaggatcccgcaatacctcttctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagcctaatagccagaagctggaaagaacccagatgccctaa
acagaggaatggatacagaaaatgtggtacatttacacaatggagtatta
ctcagctattaaaaacaatgaatttataaaattcctgggcaaatggatgt
atctggaggatatcatcctgagtgaggtaacccaatcacaaaagaagtca
cttgatatgcactcactgataagtggatattagcccagaaacctagaata
ctcaagatacaatttctaaaacacaagaaaatcaagaagaaggaagacca
acccgtggatacttcattcctttctagaacaggtaattctattttaagta
ccattatttattttatttttcaaaccaaggtccatgcaaccaacatggaa
cttggttaaataaaacttccatttcctactatctgcatagaacattggtt
ataggagcaggaagtgaacacaggtttttttaatgtagacatgtcccgac
ttaaatccctccttcatgaagaaaataatagggtgagaggacagttgctg
tgttatttctatgaattcttttctttagcccattagtacaagtggactcc
tactgtttgtttcaaatgttacactaagaattgcaagcagcagtggaggt
attaatgctcactgaacgtttcatgttagtgttagcat
gaattccagcagttccctgtggacctctgactgtgctccccaaccctgga
gcacagtcctgtggcttctcacagcccagtgcccacccagcagtagttca
gggtgcatgcagtcaaacttcccacatcacctctagaagcaaccctagcc
ctgtgacagactggatgcaggtaacccacaaactgcaaagaagcaaaaga
ggacatagagacttaggtatatgtatataaatgtggacataggtaatata
gatatacatggcattttgtgatatgttacatacctataatacattttaat
tattttttgccgtcataatgtaattacataattacccctttccctttctg
actccaaatctccatatatcctcattttctctttcaaatttatgagtttt
ttaactattgctatatccatatattgcatatatgtatgtaatatatgcat
aaatacagcctgatcattctgtaatatgctccttgtatctatgataaatt
ttaattaataaatttggcatggtgagagattaataatttaaaatagaaaa
aaattaactatatgagaatggtttgtttgaatattgtcactgtatttcct
cttttaaaactatgatattgcagtaatcttcctcatgcagtaatatgaat
aatataaaagatatgaacagaagtgaaagatgtgggtattaagatcctat
caatctcctgacatatcatctgtttccagtaatcctgtatcactgagcct
cagctgacatctcttgtatgtcaagcacagaaaacagatagctcagatct
ttagatgaagaattttatttgttttgtttgtttgtttctacattctttgg
aagatcagtgctttcacaagttactggttttcatctgggtatacttgctt
gattgtgtatgtgagcatgtaaatgcacacatgcatgtagaggccagaga
ttagtgttatgtgctttcccctattattcattcactgcttatctttgaag
acagggtcctttttcagccagattcacattataagaaagctgctggctag
ctagtgagcactaggatcttgctgtctctacctatctattctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053552_104054353
seq2: B6Ng01-162O13.b_56_637 (reverse)

seq1  GTTTCTGGGCTAATATCCACTTATCAGTGAGTACATATTGCGCGAGTTCC  50
      |||||||||||||||||||||||||||||||| |||||   | || ||| 
seq2  GTTTCTGGGCTAATATCCACTTATCAGTGAGTGCATATCAAGTGACTTCT  50

seq1  TTTGTGATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTCCATCCAT  100
      ||||||||||||||||| ||||||||||||||  |||||| | |||||||
seq2  TTTGTGATTGGGTTACCTCACTCAGGATGATATCCTCCAGATACATCCAT  100

seq1  TTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCATTTACATT  150
      ||||| |||||||| ||||||||||| |||||||||||            
seq2  TTGCCCAGGAATTTTATAAATTCATTGTTTTTAATAGC------------  138

seq1  TAATTTAATTAATGTAATTACAATTAATTAATTTATTAATTAAATAATTT  200
                                                        
seq2  --------------------------------------------------  138

seq1  AATAATTTAATTGATAAATTAATTTAATTAATTAATTTAATTAATTAAAT  250
                                                        
seq2  --------------------------------------------------  138

seq1  TAAATAATAATTTAATAATAAATTAAATATTTTAAAATTAATAATAATTT  300
                                           | | |||||    
seq2  -------------------------------------TGAGTAATA----  147

seq1  TATAAGTAAATAATTTAATTAATGTAATTTAATTAATGTAATTACATTAC  350
                                                        
seq2  --------------------------------------------------  147

seq1  ATTTAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCT  400
               |||||||||||||||||||||||||||||||||| ||||||
seq2  ---------CTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTCCT  188

seq1  CTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAG  450
      ||||| | ||||||||||||||||||||||| |||||||||       ||
seq2  CTGTTTA-GGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT-------AG  230

seq1  GCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATC  500
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  GCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCATC  280

seq1  TTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTA  550
      |||||||||||||||||||||||||||||| ||||||||| |||||||| 
seq2  TTCTGGATATATGCCCAGAAGAGGTATTGCGGGATCCTCCAGTAGTACTT  330

seq1  TGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACA  600
      ||||||||||||||| |||||||||||| | |||||||||||||||||||
seq2  TGTCCAATTTTCTGAGGAACCGCCAGACTGGTTTCCAGAGTGGTTGTACA  380

seq1  AGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCC  650
      ||| || |||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCTTGTAATCCCACCAGCAATGGAGGAGTGTTCCTCTTTCTCCACATCC  430

seq1  TCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTG  480

seq1  GTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATT  750
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGGTGATT  530

seq1  AAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTC  800
      |||||||||||||||||||||| ||||||||| | | ||| |||||||||
seq2  AAGGATGTTGAACATTTTTTCAAGTGCTTCTCAGTCCTTCAGTATTCCTC  580

seq1  AG  802
      ||
seq2  AG  582

seq1: chr2_15702569_15703669
seq2: B6Ng01-162O13.g_67_1159

seq1  GAATTCCAGCAGTTCCCTGTGGACCTCTGACTGTGCTCCCCAACCCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAGTTCCCTGTGGACCTCTGACTGTGCTCCCCAACCCTGGA  50

seq1  GCACAGTCCTGTGGCTTCTCACAGCCCAGTGCCCACCCAGCAGTAGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTCCTGTGGCTTCTCACAGCCCAGTGCCCACCCAGCAGTAGTTCA  100

seq1  GGGTGCATGCAGTCAAACTTCCCACATCACCTCTAGAAGCAACCCTAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCATGCAGTCAAACTTCCCACATCACCTCTAGAAGCAACCCTAGCC  150

seq1  CTGTGACAGACTGGATGCAGGTAACCCACAAACTGCAAAGAAGCAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACAGACTGGATGCAGGTAACCCACAAACTGCAAAGAAGCAAAAGA  200

seq1  GGACATAGAGACTTAGGTATATGTATATAAATGTGGACATAGGTAATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATAGAGACTTAGGTATATGTATATAAATGTGGACATAGGTAATATA  250

seq1  GATATACATGGCATTTTGTGATATGTTACATACCTATAATACATTTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACATGGCATTTTGTGATATGTTACATACCTATAATACATTTTAAT  300

seq1  TATTTTTTGCCGTCATAATGTAATTACATAATTACCCCTTTCCCTTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGCCGTCATAATGTAATTACATAATTACCCCTTTCCCTTTCTG  350

seq1  ACTCCAAATCTCCATATATCCTCATTTTCTCTTTCAAATTTATGAGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAATCTCCATATATCCTCATTTTCTCTTTCAAATTTATGAGTTTT  400

seq1  TTAACTATTGCTATATCCATATATTGCATATATGTATGTAATATATGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTATTGCTATATCCATATATTGCATATATGTATGTAATATATGCAT  450

seq1  AAATACAGCCTGATCATTCTGTAATATGCTCCTTGTATCTATGATAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGCCTGATCATTCTGTAATATGCTCCTTGTATCTATGATAAATT  500

seq1  TTAATTAATAAATTTGGCATGGTGAGAGATTAATAATTTAAAATAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAATAAATTTGGCATGGTGAGAGATTAATAATTTAAAATAGAAAA  550

seq1  AAATTAACTATATGAGAATGGTTTGTTTGAATATTGTCACTGTATTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACTATATGAGAATGGTTTGTTTGAATATTGTCACTGTATTTCCT  600

seq1  CTTTTAAAACTATGATATTGCAGTAATCTTCCTCATGCAGTAATATGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAACTATGATATTGCAGTAATCTTCCTCATGCAGTAATATGAAT  650

seq1  AATATAAAAGATATGAACAGAAGTGAAAGATGTGGGTATTAAGATCCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAGATATGAACAGAAGTGAAAGATGTGGGTATTAAGATCCTAT  700

seq1  CAATCTCCTGACATATCATCTGTTTCCAGTAATCCTGTATCACTGAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCCTGACATATCATCTGTTTCCAGTAATCCTGTATCACTGAGCCT  750

seq1  CAGCTGACATCTCTTGTATGTCAAGCACAGAAAACAGATAGCTCAGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGACATCTCTTGTATGTCAAGCACAGAAAACAGATAGCTCAGATCT  800

seq1  TTAGATGAAGAATTTTATTTGTTTTGTTTGTTTGTTTCTACATTCTTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGAAGAATTTTATTTGTTTTGTTTGTTTGTTTCTACATTCTTTGG  850

seq1  AAGATCAGTGCTTTCACAAGTTACTGGTTTTCATCTGGGTATACTTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGTGCTTTCACAAGTTACTGGTTTTCATCTGGGTATACTTGCTT  900

seq1  GATTGTGTATGTGAGCATGTAAATGCACACATGCATGTAGAGGCCAGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGTATGTGAGCATGTAAATGCACACATGCATGTAGAGGCCAGAGA  950

seq1  TTAGTGTTATGTGCCTTCCCCTATTATTCATTCACTGCCTTATCTTTGAA  1000
      |||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  TTAGTGTTATGTGCTTTCCCCTATTATTCATTCACTG-CTTATCTTTGAA  999

seq1  GACAGGGTCCTTTTTCAGCCCAGAATTCACCATTATAAGAAAGCTGGCTG  1050
      |||||||||||||||||| |||| ||||| ||||||||||||||| ||||
seq2  GACAGGGTCCTTTTTCAG-CCAG-ATTCA-CATTATAAGAAAGCT-GCTG  1045

seq1  GCTAGCTAGTGAGCACTAGGGAATCTGCCTGTCTCTACCTATCTAATTCT  1100
      ||||||||||||||||||||  ||||  |||||||||||||||| |||||
seq2  GCTAGCTAGTGAGCACTAGG--ATCTTGCTGTCTCTACCTATCT-ATTCT  1092

seq1  G  1101
      |
seq2  G  1093