BAC Information

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BAC

Clone NameB6Ng01-165F07
Chromosome2 (Build37)
Map Location 35,925,669 - 36,057,422
singlet/doubletdoublet
Overlap gene1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf
Upstream geneAI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8
Downstream geneLOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165F07.bB6Ng01-165F07.g
ACCDH957417DH957418
length1,093758
definitionDH957417|Mus musculus domesticus DNA, BAC clone: B6Ng01-165F07, 5' end.DH957418|Mus musculus domesticus DNA, BAC clone: B6Ng01-165F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,925,669 - 35,926,755)(36,056,277 - 36,057,422)
sequence
gaattccctcatttctctggtccccagcgctgggattgcagtgtgctctg
ttggatatatgaatgtgtcccatgtggttgggataatggcccagagaatg
aggtgctacagttggccttaaagagcaagagatgggctttgttaaatgga
agggaaggaacaacagggcgagagcacaggacacctggtccctaagatgt
ggcactcagacctgtttgtgtgtcagaggctgggggaggaatccgaggga
acttcctgaatataccagaagggctttgacaggggtgtctgcgtaggtct
gggctgtgcattcaagcaggggacaaagtaggagaccgaatgctggttag
agggtttggcttcagtccccaagcagtgaggacaggagctgcagaggggt
ttctcaggaagtggggcatggccacggcctgcagctttgaagagaggcat
ggctctatcctggcaccactgagaacctggagaaaggctttggctctctg
accatcactcccctcccctgtgttctagagatggagcactgacctgcaac
accagtgttgaagaatacttccatccctcctggtgtccccactaccccag
cctaatccagcctttggcatctgccaagtatacactggcttccatcatgt
gtatacagccagagatcaggggcaaaaggagcagatgctataaagtcaag
ctgacagagtgaccttggctatggcactcagtttttctgaattgttttac
tacaagggcaggcatcctgaatgtggttaacaaacacaaatccaatcagc
actcaagtagtaaggggggtggggcacgtcacaggaagaatagtaacggg
tcccaacagcataggtcctatgcacccacccctccatcagcatgcacttg
cttctggcgtggtaggaaagccatccgcagcatcctgcttctgaacatct
cctgtccacaataggcacagattagacgattgcttctaggttagcatcgc
ccacagaacataagcacctgtggcatttccacctcagcactgaaggggtc
cctaaggcctaggaacttttcttaggaatttccaatcatgttt
gaattcatatttctgggagcagtagagagtctctgcatggtttgcatttt
gaagagttggtcaaatagggaaagaaccagtcaaggggctcctaggctct
ggaggaacaaagatggccccaagaggctggccatcctccagccatgggga
gtcactgaaagctgtgaggagggccaccacactgcaaaggctgtcctaag
aggtttgaaccgatggtaaaggatggagcagaggaaaagagagcaggtca
gaggcaggagcccctgcagctgctcacagttcagcattgcatctctatgg
ggaagctaatttatggccattctaatttatggccaagatgagttgcctaa
tattaaggtggttctaagtcagaatcaattggttctgagaatccaagaga
cactgtgatgaaactaccttataaacaaaacaaaacaagcagggaactgg
tgacatcaaaggatctttgtgagtgacttgcagactctaagccttaaatt
cactaaaaacagggagtggatgagccctggggtcctttccctgttcccta
aagcctgtgactttgatccctatgaagagctaatgacacctctggaccca
gggtcttacaaatcccagtgaggtatccgccaagttgtggatgagactcc
tccagggagtggagacaggaagcagtcatgaaatgtaggctcaagtccca
actcagacacttcactcttgatgggcagttcatccacatgtgcatacatg
ttgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_35925669_35926755
seq2: B6Ng01-165F07.b_48_1140

seq1  GAATTCCCTCATTTCTCTGGTCCCCAGCGCTGGGATTGCAGTGTGCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCATTTCTCTGGTCCCCAGCGCTGGGATTGCAGTGTGCTCTG  50

seq1  TTGGATATATGAATGTGTCCCATGTGGTTGGGATAATGGCCCAGAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATATATGAATGTGTCCCATGTGGTTGGGATAATGGCCCAGAGAATG  100

seq1  AGGTGCTACAGTTGGCCTTAAAGAGCAAGAGATGGGCTTTGTTAAATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTACAGTTGGCCTTAAAGAGCAAGAGATGGGCTTTGTTAAATGGA  150

seq1  AGGGAAGGAACAACAGGGCGAGAGCACAGGACACCTGGTCCCTAAGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGAACAACAGGGCGAGAGCACAGGACACCTGGTCCCTAAGATGT  200

seq1  GGCACTCAGACCTGTTTGTGTGTCAGAGGCTGGGGGAGGAATCCGAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCAGACCTGTTTGTGTGTCAGAGGCTGGGGGAGGAATCCGAGGGA  250

seq1  ACTTCCTGAATATACCAGAAGGGCTTTGACAGGGGTGTCTGCGTAGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGAATATACCAGAAGGGCTTTGACAGGGGTGTCTGCGTAGGTCT  300

seq1  GGGCTGTGCATTCAAGCAGGGGACAAAGTAGGAGACCGAATGCTGGTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGCATTCAAGCAGGGGACAAAGTAGGAGACCGAATGCTGGTTAG  350

seq1  AGGGTTTGGCTTCAGTCCCCAAGCAGTGAGGACAGGAGCTGCAGAGGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTGGCTTCAGTCCCCAAGCAGTGAGGACAGGAGCTGCAGAGGGGT  400

seq1  TTCTCAGGAAGTGGGGCATGGCCACGGCCTGCAGCTTTGAAGAGAGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGAAGTGGGGCATGGCCACGGCCTGCAGCTTTGAAGAGAGGCAT  450

seq1  GGCTCTATCCTGGCACCACTGAGAACCTGGAGAAAGGCTTTGGCTCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTATCCTGGCACCACTGAGAACCTGGAGAAAGGCTTTGGCTCTCTG  500

seq1  ACCATCACTCCCCTCCCCTGTGTTCTAGAGATGGAGCACTGACCTGCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACTCCCCTCCCCTGTGTTCTAGAGATGGAGCACTGACCTGCAAC  550

seq1  ACCAGTGTTGAAGAATACTTCCATCCCTCCTGGTGTCCCCACTACCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGTTGAAGAATACTTCCATCCCTCCTGGTGTCCCCACTACCCCAG  600

seq1  CCTAATCCAGCCTTTGGCATCTGCCAAGTATACACTGGCTTCCATCATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCCAGCCTTTGGCATCTGCCAAGTATACACTGGCTTCCATCATGT  650

seq1  GTATACAGCCAGAGATCAGGGGCAAAAGGAGCAGATGCTATAAAGTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACAGCCAGAGATCAGGGGCAAAAGGAGCAGATGCTATAAAGTCAAG  700

seq1  CTGACAGAGTGACCTTGGCTATGGCACTCAGTTTTTCTGAATTGTTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGAGTGACCTTGGCTATGGCACTCAGTTTTTCTGAATTGTTTTAC  750

seq1  TACAAGGGCAGGCATCCTGAATGTGGTTAACAAACACAAATCCAATCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGGCAGGCATCCTGAATGTGGTTAACAAACACAAATCCAATCAGC  800

seq1  ACTCAAGTAGTAAGGGGGGTGGGGCACGTCACAGGAAGAATAGTAACGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGTAGTAAGGGGGGTGGGGCACGTCACAGGAAGAATAGTAACGGG  850

seq1  TCCCAACAGCATAGGTCCTATGCACCCACCCCTCCATCAGCATGCACTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACAGCATAGGTCCTATGCACCCACCCCTCCATCAGCATGCACTTG  900

seq1  C-TCTGGCGTGGTAGGAAGGCCATCCGCAGCATCCTGCTCCTGAACACCT  949
      | |||||||||||||||| |||||||||||||||||||| ||||||| ||
seq2  CTTCTGGCGTGGTAGGAAAGCCATCCGCAGCATCCTGCTTCTGAACATCT  950

seq1  CCTGTCCACAATAGGCACAGA-TAGACGATGGC-TCTAGGTTAGCATCGC  997
      ||||||||||||||||||||| |||||||| || ||||||||||||||||
seq2  CCTGTCCACAATAGGCACAGATTAGACGATTGCTTCTAGGTTAGCATCGC  1000

seq1  CCACAG-ACATAAGCCACCTGT-GCATTTCCACCTCAGCACTG-AGGTGC  1044
      |||||| ||||||| ||||||| |||||||||||||||||||| ||| | 
seq2  CCACAGAACATAAG-CACCTGTGGCATTTCCACCTCAGCACTGAAGGGGT  1049

seq1  CCCTAAGGCCTAGG-ACCTTTCTAAAGGATTTCCAATCATGTTT  1087
      |||||||||||||| || ||||| | | ||||||||||||||||
seq2  CCCTAAGGCCTAGGAACTTTTCTTAGGAATTTCCAATCATGTTT  1093

seq1: chr2_36056277_36057422
seq2: B6Ng01-165F07.g_69_826 (reverse)

seq1  ACACACATACGCTTAACATGTTTAAGACCTACAGTCTTGAACCCCAAATT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTACCAGTCCCAGAGAAACTGAGTTTCTGATAAAATGGGGTAACTGTGGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGATGGAAAAGGAGAAACCAGCCCTACCTCTCCCTGGTTCCACTATTCCC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CGGCATCCACTATTTACAGAGTGGGTGAGGCAGAGAGGCGGCTGCCTCAT  200
                                                        
seq2  --------------------------------------------------  0

seq1  ACAAAGTCATAGTTGGCAGTAAGTCCTGGGATCTGGGACTGGAATGTTGT  250
                                                        
seq2  --------------------------------------------------  0

seq1  GTGAGGGTGGGTCTAGGAACTGGCAAGTTGAGACTCTCACCACTTCCAGG  300
                                                        
seq2  --------------------------------------------------  0

seq1  ACACTCCACCTGGTGTAGAGAAGGTGTTAGTGAGGTGAAGGTGTGTTTTG  350
                                                        
seq2  --------------------------------------------------  0

seq1  TGAGTGTGAGTGTGTGTGTGTGTATGCAAGCACACACACACACACACATG  400
                                           ||||||| |||||
seq2  -------------------------------------ACACACA-ACATG  12

seq1  TATGCACATGTGGATGAACTGCCCATCAAGAGTGAAGTGTCTGAGTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACATGTGGATGAACTGCCCATCAAGAGTGAAGTGTCTGAGTTGGG  62

seq1  ACTTGAGCCTACATTTCATGACTGCTTCCTGTCTCCACTCCCTGGAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGCCTACATTTCATGACTGCTTCCTGTCTCCACTCCCTGGAGGAG  112

seq1  TCTCATCCACAACTTGGCGGATACCTCACTGGGATTTGTAAGACCCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCACAACTTGGCGGATACCTCACTGGGATTTGTAAGACCCTGGG  162

seq1  TCCAGAGGTGTCATTAGCTCTTCATAGGGATCAAAGTCACAGGCTTTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGTGTCATTAGCTCTTCATAGGGATCAAAGTCACAGGCTTTAGG  212

seq1  GAACAGGGAAAGGACCCCAGGGCTCATCCACTCCCTGTTTTTAGTGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGAAAGGACCCCAGGGCTCATCCACTCCCTGTTTTTAGTGAATT  262

seq1  TAAGGCTTAGAGTCTGCAAGTCACTCACAAAGATCCTTTGATGTCACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTTAGAGTCTGCAAGTCACTCACAAAGATCCTTTGATGTCACCAG  312

seq1  TTCCCTGCTTGTTTTGTTTTGTTTATAAGGTAGTTTCATCACAGTGTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCTTGTTTTGTTTTGTTTATAAGGTAGTTTCATCACAGTGTCTC  362

seq1  TTGGATTCTCAGAACCAATTGATTCTGACTTAGAACCACCTTAATATTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTCTCAGAACCAATTGATTCTGACTTAGAACCACCTTAATATTAG  412

seq1  GCAACTCATCTTGGCCATAAATTAGAATGGCCATAAATTAGCTTCCCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCATCTTGGCCATAAATTAGAATGGCCATAAATTAGCTTCCCCAT  462

seq1  AGAGATGCAATGCTGAACTGTGAGCAGCTGCAGGGGCTCCTGCCTCTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCAATGCTGAACTGTGAGCAGCTGCAGGGGCTCCTGCCTCTGAC  512

seq1  CTGCTCTCTTTTCCTCTGCTCCATCCTTTACCATCGGTTCAAACCTCTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCTTTTCCTCTGCTCCATCCTTTACCATCGGTTCAAACCTCTTA  562

seq1  GGACAGCCTTTGCAGTGTGGTGGCCCTCCTCACAGCTTTCAGTGACTCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCTTTGCAGTGTGGTGGCCCTCCTCACAGCTTTCAGTGACTCCC  612

seq1  CATGGCTGGAGGATGGCCAGCCTCTTGGGGCCATCTTTGTTCCTCCAGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGGAGGATGGCCAGCCTCTTGGGGCCATCTTTGTTCCTCCAGAG  662

seq1  CCTAGGAGCCCCTTGACTGGTTCTTTCCCTATTTGACCAACTCTTCAAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAGCCCCTTGACTGGTTCTTTCCCTATTTGACCAACTCTTCAAAA  712

seq1  TGCAAACCATGCAGAGACTCTCTACTGCTCCCAGAAATATGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACCATGCAGAGACTCTCTACTGCTCCCAGAAATATGAATTC  758