BAC Information

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BAC

Clone NameB6Ng01-165I21
Chromosome2 (Build37)
Map Location 181,516,104 - 181,632,045
singlet/doubletdoublet
Overlap geneMyt1, Pcmtd2, Polr3k, EG432881
Upstream geneOTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538
Downstream geneLOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165I21.bB6Ng01-165I21.g
ACCDH957584DH957585
length7841,048
definitionDH957584|Mus musculus domesticus DNA, BAC clone: B6Ng01-165I21, 5' end.DH957585|Mus musculus domesticus DNA, BAC clone: B6Ng01-165I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,516,104 - 181,516,887)(181,630,986 - 181,632,045)
sequence
gaattctggataaaaacagttttggtaatgcatcccactaaaaatatagg
gtagtggtggagaagataatatttatgataatgtgtactcaatctgcctt
ctcctaggagaagaaagcagaatgtaggaatattcatttcctgtttttat
tgttggtaactaatgaccttcctttgaaactgcagcatagaaagcaggtt
gtcatggagacagggaatgacgttcagggaataggtacacaatgaatttc
tttgttgtgtccagctgatatattcagcctctgcttagatgtgtgaattt
atgtgaattatgagaattaaatattaactgtaggcattgctctggagaga
ggtaaaaccaggaggagaaaatatactgaaaacaagtaatgagtgctagt
ggggtgcagagttccttgtgagaggccatgttatcagaaatgatcaggcc
caccggatgggcttcactttcctcagtcagtgggtgcttgagaagttgaa
aacataacatacatttaacaaaagcaaatggacctgagctgcacattctt
ttgggataataaaaaaatgtagttatgattgagttactcactcattggcc
agttagttttcaaaatccctcaataccatctttgcttccaagtgggcctc
atatgatccatactagtgcccagaatggaacagggtgtctacacccagtg
acacatgtgcaaaatagccaccagaggtgaggccatggtataggccctct
gcttctaaagagtaagggtctccacctccccctc
gaattccttggccttggctccaagctccgcttccgctctttgcgagactt
gaatctacccacaaacactttacggtcattgagaagcatgccgttcatct
tctcgatgaccttgtcggcggcctcttgggtctcgaagtgaacaaaagca
tagcccttagagaaagtgtcatacagtgccttgttgtctatggatttgtc
caggttcttgatgaagacatttcccaccccagactttcgcaaagagggat
ccccctgcgaccacatgatgcggattggctttccctttatcacgtcgaag
ttcatggtgtccaaggccctctcagcatcagctggctgctggaagttgat
gtaggcataacccagagagcacagggtgaacttaccgcgacagacccgga
tggacagcacaggccccgcagggctgaacttttcatacagcataggtttg
gtgacgtccgagtgcaaatcgcccacgtataaggaggccatggggtagct
gctggctgcagagttcatctcccccaccccccacgaccctgagccccgcc
aggaggacttctaacaaggcctactgcaggacaaaaggggctccgaggag
ctgtggcacacgcctcagcgcacaggtggcaccagcgactccagggaagg
ctggagcagggaggctctgagccgggacccaagtgcaggacgacttgcac
gggactgcataaagccccaagacaaaaggctctcaaaaacaatatggccc
gctcctggagtttatactctccagctgtcctggcttggggcttaaacata
aaaattaaagtaggaaatcccctcgtagagggggcaaaaaaatttcaaga
ggcatcagatgctgtgctcacggcgccttggacacgcgcgtttcgcaata
atatatgccccgggctcccggaggtttacagttacagtggccgggacggg
gaaaccaatctttgtggtgcaaggatggcagcacgaacaattggtgtcgg
ccagcttgggcacgggctgccacccggcccggagccttgcaagggcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_181516104_181516887
seq2: B6Ng01-165I21.b_45_828

seq1  GAATTCTGGATAAAAACAGTTTTGGTAATGCATCCCACTAAAAATATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGATAAAAACAGTTTTGGTAATGCATCCCACTAAAAATATAGG  50

seq1  GTAGTGGTGGAGAAGATAATATTTATGATAATGTGTACTCAATCTGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGTGGAGAAGATAATATTTATGATAATGTGTACTCAATCTGCCTT  100

seq1  CTCCTAGGAGAAGAAAGCAGAATGTAGGAATATTCATTTCCTGTTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGGAGAAGAAAGCAGAATGTAGGAATATTCATTTCCTGTTTTTAT  150

seq1  TGTTGGTAACTAATGACCTTCCTTTGAAACTGCAGCATAGAAAGCAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTAACTAATGACCTTCCTTTGAAACTGCAGCATAGAAAGCAGGTT  200

seq1  GTCATGGAGACAGGGAATGACGTTCAGGGAATAGGTACACAATGAATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGAGACAGGGAATGACGTTCAGGGAATAGGTACACAATGAATTTC  250

seq1  TTTGTTGTGTCCAGCTGATATATTCAGCCTCTGCTTAGATGTGTGAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTGTCCAGCTGATATATTCAGCCTCTGCTTAGATGTGTGAATTT  300

seq1  ATGTGAATTATGAGAATTAAATATTAACTGTAGGCATTGCTCTGGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATTATGAGAATTAAATATTAACTGTAGGCATTGCTCTGGAGAGA  350

seq1  GGTAAAACCAGGAGGAGAAAATATACTGAAAACAAGTAATGAGTGCTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAACCAGGAGGAGAAAATATACTGAAAACAAGTAATGAGTGCTAGT  400

seq1  GGGGTGCAGAGTTCCTTGTGAGAGGCCATGTTATCAGAAATGATCAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCAGAGTTCCTTGTGAGAGGCCATGTTATCAGAAATGATCAGGCC  450

seq1  CACCGGATGGGCTTCACTTTCCTCAGTCAGTGGGTGCTTGAGAAGTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGATGGGCTTCACTTTCCTCAGTCAGTGGGTGCTTGAGAAGTTGAA  500

seq1  AACATAACATACATTTAACAAAAGCAAATGGACCTGAGCTGCACATTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAACATACATTTAACAAAAGCAAATGGACCTGAGCTGCACATTCTT  550

seq1  TTGGGATAATAAAAAAATGTAGTTATGATTGAGTTACTCACTCATTGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATAATAAAAAAATGTAGTTATGATTGAGTTACTCACTCATTGGCC  600

seq1  AGTTAGTTTTCAAAATCCCTCAATACCATCTTTGCTTCCAAGTGGGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTTTTCAAAATCCCTCAATACCATCTTTGCTTCCAAGTGGGCCTC  650

seq1  ATATGATCCATACTAGTGCCCAGAATGGAACAGGGTGTCTACACCCAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATCCATACTAGTGCCCAGAATGGAACAGGGTGTCTACACCCAGTG  700

seq1  ACACATGTGCAAAATAGCCACCAGAGGTGAGGCCATGGTATAGGCCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTGCAAAATAGCCACCAGAGGTGAGGCCATGGTATAGGCCCTCT  750

seq1  GCTTCTAAAGAGTAAGGGTCTCCACCTCCCCCTC  784
      ||||||||||||||||||||||||||||||||||
seq2  GCTTCTAAAGAGTAAGGGTCTCCACCTCCCCCTC  784

seq1: chr2_181630986_181632045
seq2: B6Ng01-165I21.g_69_1116 (reverse)

seq1  CCGCCCCTGCAAGCCTCCGCGCCGCGTGGCAGCCCCGTGCCCCAGCTGGC  50
      |||||| |||||| ||||| |||| ||||||| ||||||||| |||||||
seq2  CCGCCCTTGCAAGGCTCCGGGCCGGGTGGCAG-CCCGTGCCCAAGCTGGC  49

seq1  CG-CACCACTTGTTCGTGCTGCCCTTCCCTGGCACCCACAAAGATTTGGT  99
      || ||||| |||||||||||||| |  ||| ||| ||||||||| |||||
seq2  CGACACCAATTGTTCGTGCTGCCAT--CCTTGCA-CCACAAAGA-TTGGT  95

seq1  TTCCCCCTTCCCGGGCCACTGTAACTGTAAACCTCCGGGAGCCCGGGGCC  149
      |||||| |  || |||||||||||||||||||||||||||||||||||| 
seq2  TTCCCCGT--CCCGGCCACTGTAACTGTAAACCTCCGGGAGCCCGGGGCA  143

seq1  TATATTTATTGCGAAACGCGCGTGTTCCCAAGGCGGCCGTGAGCACAGCA  199
      |||| ||||||||||||||||||||  ||||||| |||||||||||||||
seq2  TATA-TTATTGCGAAACGCGCGTGT--CCAAGGC-GCCGTGAGCACAGCA  189

seq1  TCTGATTGCCTCTTGAAATTTTTTTTGCCCCCTCTACGAGGGGATTTCCT  249
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTGA-TGCCTCTTGAAA-TTTTTTTGCCCCCTCTACGAGGGGATTTCCT  237

seq1  ACTTTAATTTTTATGTTTTAAGCCCCAAGCCAGGACAGCTGGAGAGTATA  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTTTAATTTTTATG-TTTAAGCCCCAAGCCAGGACAGCTGGAGAGTATA  286

seq1  AACTCCAGGAGCGGGCCATATTGTTTTTGAGAGCCTTTTGTCTTGGGGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGGAGCGGGCCATATTGTTTTTGAGAGCCTTTTGTCTTGGGGCT  336

seq1  TT-TGCAGTCCCGTGCAAGTCGTCCTGCACTTGGGTCCCGGCTCAGAGCC  398
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAGTCCCGTGCAAGTCGTCCTGCACTTGGGTCCCGGCTCAGAGCC  386

seq1  TCCCTGCTCCAGCCTTCCCTGGAGTCGCTGGTGCCACCTGTGCGCTGAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTCCAGCCTTCCCTGGAGTCGCTGGTGCCACCTGTGCGCTGAGG  436

seq1  CGTGTGCCACAGCTCCTCGGAGCCCCTTTTGTCCTGCAGTAGGCCTTGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGCCACAGCTCCTCGGAGCCCCTTTTGTCCTGCAGTAGGCCTTGTT  486

seq1  AGAAGTCCTCCTGGCGGGGCTCAGGGTCGTGGGGGGTGGGGGAGATGAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCCTCCTGGCGGGGCTCAGGGTCGTGGGGGGTGGGGGAGATGAAC  536

seq1  TCTGCAGCCAGCAGCTACCCCATGGCCTCCTTATACGTGGGCGATTTGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCCAGCAGCTACCCCATGGCCTCCTTATACGTGGGCGATTTGCA  586

seq1  CTCGGACGTCACCAAACCTATGCTGTATGAAAAGTTCAGCCCTGCGGGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGACGTCACCAAACCTATGCTGTATGAAAAGTTCAGCCCTGCGGGGC  636

seq1  CTGTGCTGTCCATCCGGGTCTGTCGCGGTAAGTTCACCCTGTGCTCTCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGTCCATCCGGGTCTGTCGCGGTAAGTTCACCCTGTGCTCTCTG  686

seq1  GGTTATGCCTACATCAACTTCCAGCAGCCAGCTGATGCTGAGAGGGCCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGCCTACATCAACTTCCAGCAGCCAGCTGATGCTGAGAGGGCCTT  736

seq1  GGACACCATGAACTTCGACGTGATAAAGGGAAAGCCAATCCGCATCATGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCATGAACTTCGACGTGATAAAGGGAAAGCCAATCCGCATCATGT  786

seq1  GGTCGCAGGGGGATCCCTCTTTGCGAAAGTCTGGGGTGGGAAATGTCTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGCAGGGGGATCCCTCTTTGCGAAAGTCTGGGGTGGGAAATGTCTTC  836

seq1  ATCAAGAACCTGGACAAATCCATAGACAACAAGGCACTGTATGACACTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAACCTGGACAAATCCATAGACAACAAGGCACTGTATGACACTTT  886

seq1  CTCTAAGGGCTATGCTTTTGTTCACTTCGAGACCCAAGAGGCCGCCGACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGGGCTATGCTTTTGTTCACTTCGAGACCCAAGAGGCCGCCGACA  936

seq1  AGGTCATCGAGAAGATGAACGGCATGCTTCTCAATGACCGTAAAGTGTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATCGAGAAGATGAACGGCATGCTTCTCAATGACCGTAAAGTGTTT  986

seq1  GTGGGTAGATTCAAGTCTCGCAAAGAGCGGAAGCGGAGCTTGGAGCCAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTAGATTCAAGTCTCGCAAAGAGCGGAAGCGGAGCTTGGAGCCAAG  1036

seq1  GCCAAGGAATTC  1060
      ||||||||||||
seq2  GCCAAGGAATTC  1048