BAC Information

Click to search

BAC

Clone NameB6Ng01-165O09
Chromosome2 (Build37)
Map Location 142,579,326 - 142,728,982
singlet/doubletdoublet
Overlap geneKif16b
Upstream geneLOC668913, LOC668914
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165O09.bB6Ng01-165O09.g
ACCDH957831DH957832
length966825
definitionDH957831|Mus musculus domesticus DNA, BAC clone: B6Ng01-165O09, 5' end.DH957832|Mus musculus domesticus DNA, BAC clone: B6Ng01-165O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,727,992 - 142,728,982)(142,579,326 - 142,579,961)
sequence
cacacctgttcttggttgtcttggttgctctcagcgactctacagctggt
agggtgttgaagccctgcccgcccgagagcgcaccctacacagtttgtcc
ccaagcagctcccatatacggcgggctccgcccctgcccgtggctgccac
agccgggtgcagcctggctggcggctgtgcctggacccgcccgctgcttc
tgctattgcgcatgcgccccattttcaaccctccgagttttcccgccctt
gattggctgactctgcgcccatttctaaacttgtaagcgccttagtccag
gctttgtaggactccgaacaaaggggacgttctgattctaccctaccttg
aagggttctaggaaagctgagatgaggactcctggtactagtggaccaca
cattggccgtcgtattatttcacttagtctattattaaacccttggagtt
ccagtttagcaggcgaggcagactggaagactcaaagctagtattggagt
tcgagccaaaaacccgggagactttttcggctcccctcagggacttaagc
agcatcacatctaagctttctagagaccatttgaaccgaagtcatctgcc
cgggagtgaaataatagcggggatatgctggtcttgaggacagaatgttc
cattgtggtcgttagagacctcgagggtgaggaggagcaagtcagtaggc
ttgctttatactccatcagcaagtgcaaaggcaggagatcagggtccagg
aggaaggctggtctgtaagttttgagcgaccctgactggggcaggaggaa
gatagttgatactggagtttttgtgtccagcaggtgacttacaggtgaag
gcatagggttaactgaatgatttacagggagatagcccggtagaaatcac
tgatgccagggctttagctcataaaaaaaagggaagaatagaggataagg
agaggagaaggaggag
gaattctaattgaggggcagacaaagtgactaattagagaaagatctgac
agaatgactcagagataggtaaacccaactcggcaggagagaggatggaa
ggagaggtgacttaatattgagagcagtgcagagaggaggcagttctact
gttatagagtaacaggttgcagagaaaaaacacactagacacaggtgaag
acagaatgaaccagcaaatgaaaaggagcccagaatatatgaacatactg
tgaaagttagtatgaagccaagcagagcaattcagtcacagagagaagac
attgagtcagtcagcttggagaggagtttgaagaagaacagctgagtcaa
atcagccagccagagttcagaaagaacaaaaagagtgagataattcagaa
ataagtctgaattaagaggctgaaaataaggcctatataagattttaggg
aggcagtaagcttcaaagatggcaattatatggtgcacgcctttaatccc
agcacttgggagacagaggcaggcagatttctgagttcgaagccagcctg
gtctacaaagtgagttccaggacagccagggctatacagaaaaacctgtt
tatacacacacacacactccaaccaacacacaaatacacacacacacttt
tacactgcagggaaagacaagtcctacaatcagcctccaatgtcaattta
gttctatggttctcttagcaagccacatttgagatagacaagaagatcaa
aagcttagttcttaatctgacccaaaccaggccataatttttttaataac
ctggaaggccttattggccaggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142727992_142728982
seq2: B6Ng01-165O09.b_51_1016 (reverse)

seq1  CTCCTCCTTCTCCTCCTTCTCCTCCTTCTCCTTCTCCTTCTTCTTCTTAT  50
                        ||||||||||||| ||||||| | ||   |||
seq2  ------------------CTCCTCCTTCTCC-TCTCCTTATCCT--CTAT  29

seq1  TCTTCCCTTTTTTTTTATGAGCTAAAGCCCCTGGCATCAGTGATTTCTTA  100
      ||||||| ||||||||||||||||||| ||||||||||||||||||| ||
seq2  TCTTCCC-TTTTTTTTATGAGCTAAAG-CCCTGGCATCAGTGATTTC-TA  76

seq1  CCGGGCTATCTCCCTGTAAATTCATTCAGTTAACCCTATGCCTTCACCTG  150
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCGGGCTATCTCCCTGTAAA-TCATTCAGTTAACCCTATGCCTTCACCTG  125

seq1  TAAGTCACCTGCTGGACACAAAAACTCCAGTATCAACTATCTTCCTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCACCTGCTGGACACAAAAACTCCAGTATCAACTATCTTCCTCCTG  175

seq1  CCCCAGTCAGGGTCGCTCAAAACTTACAGACCAGCCTTCCTCCTGGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTCAGGGTCGCTCAAAACTTACAGACCAGCCTTCCTCCTGGACCC  225

seq1  TGATCTCCTGCCTTTGCACTTGCTGATGGAGTATAAAGCAAGCCTACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCCTGCCTTTGCACTTGCTGATGGAGTATAAAGCAAGCCTACTGA  275

seq1  CTTGCTCCTCCTCACCCTCGAGGTCTCTAACGACCACAATGGAACATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCCTCCTCACCCTCGAGGTCTCTAACGACCACAATGGAACATTCT  325

seq1  GTCCTCAAGACCAGCATATCCCCGCTATTATTTCACTCCCGGGCAGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAAGACCAGCATATCCCCGCTATTATTTCACTCCCGGGCAGATGA  375

seq1  CTTCGGTTCAAATGGTCTCTAGAAAGCTTAGATGTGATGCTGCTTAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGTTCAAATGGTCTCTAGAAAGCTTAGATGTGATGCTGCTTAAGTC  425

seq1  CCTGAGGGGAGCCGAAAAAGTCTCCCGGGTTTTTGGCTCGAACTCCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGGGAGCCGAAAAAGTCTCCCGGGTTTTTGGCTCGAACTCCAATA  475

seq1  CTAGCTTTGAGTCTTCCAGTCTGCCTCGCCTGCTAAACTGGAACTCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTTGAGTCTTCCAGTCTGCCTCGCCTGCTAAACTGGAACTCCAAG  525

seq1  GGTTTAATAATAGACTAAGTGAAATAATACGACGGCCAATGTGTGGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAATAATAGACTAAGTGAAATAATACGACGGCCAATGTGTGGTCCA  575

seq1  CTAGTACCAGGAGTCCTCATCTCAGCTTTCCTAGAACCCTTCAAGGTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTACCAGGAGTCCTCATCTCAGCTTTCCTAGAACCCTTCAAGGTAGG  625

seq1  GTAGAATCAGAACGTCCCCTTTGTTCGGAGTCCTACAAAGCCTGGACTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATCAGAACGTCCCCTTTGTTCGGAGTCCTACAAAGCCTGGACTAA  675

seq1  GGCGCTTACAAGTTTAGAAATGGGCGCAGAGTCAGCCAATCAAGGGCGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTTACAAGTTTAGAAATGGGCGCAGAGTCAGCCAATCAAGGGCGGG  725

seq1  AAAACTCGGAGGGTTGAAAATGGGGCGCATGCGCAATAGCAGAAGCAGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCGGAGGGTTGAAAATGGGGCGCATGCGCAATAGCAGAAGCAGCG  775

seq1  GGCGGGTCCAGGCACAGCCGCCAGCCAGGCTGCACCCGGCTGTGGCAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGTCCAGGCACAGCCGCCAGCCAGGCTGCACCCGGCTGTGGCAGCC  825

seq1  ACGGGCAGGGGCGGAGCCCGCCGTATATGGGAGCTGCTTGGGGACAAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCAGGGGCGGAGCCCGCCGTATATGGGAGCTGCTTGGGGACAAACT  875

seq1  GTGTAGGGTGCGCTCTCGGGCGGGCAGGGCTTCAACACCCTACCAGCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGGTGCGCTCTCGGGCGGGCAGGGCTTCAACACCCTACCAGCTGT  925

seq1  AGAGTCGCTGAGAGCAACCAAGACAACCAAGAACAGGTGTG  991
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCGCTGAGAGCAACCAAGACAACCAAGAACAGGTGTG  966

seq1: chr2_142579326_142579961
seq2: B6Ng01-165O09.g_218_852

seq1  ACTGTTATAGAGTAACAGGTTGCAGAGAAAAAACACACTAGACACAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATAGAGTAACAGGTTGCAGAGAAAAAACACACTAGACACAGGTG  50

seq1  AAGACAGAATGAACCAGCAAATGAAAAGGAGCCCAGAATATATGAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAATGAACCAGCAAATGAAAAGGAGCCCAGAATATATGAACATA  100

seq1  CTGTGAAAGTTAGTATGAAGCCAAGCAGAGCAATTCAGTCACAGAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAAGTTAGTATGAAGCCAAGCAGAGCAATTCAGTCACAGAGAGAA  150

seq1  GACATTGAGTCAGTCAGCTTGGAGAGGAGTTTGAAGAAGAACAGCTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGAGTCAGTCAGCTTGGAGAGGAGTTTGAAGAAGAACAGCTGAGT  200

seq1  CAAATCAGCCAGCCAGAGTTCAGAAAGAACAAAAAGAGTGAGATAATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGCCAGCCAGAGTTCAGAAAGAACAAAAAGAGTGAGATAATTCA  250

seq1  GAAATAAGTCTGAATTAAGAGGCTGAAAATAAGGCCTATATAAGATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGTCTGAATTAAGAGGCTGAAAATAAGGCCTATATAAGATTTTA  300

seq1  GGGAGGCAGTAAGCTTCAAAGATGGCAATTATATGGTGCACGCCTTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGTAAGCTTCAAAGATGGCAATTATATGGTGCACGCCTTTAAT  350

seq1  CCCAGCACTTGGGAGACAGAGGCAGGCAGATTTCTGAGTTCGAAGCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTTGGGAGACAGAGGCAGGCAGATTTCTGAGTTCGAAGCCAGC  400

seq1  CTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAAAAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAAAAACCT  450

seq1  GTTTATACACACACACACACACACACACACACACAAATACACACACACAC  500
      |||||||||||||||||||| |  ||  ||||||||||||||||||||||
seq2  GTTTATACACACACACACACTCCAACCAACACACAAATACACACACACAC  500

seq1  TTTTACACTGCAGGGAAAGACAAGTCCTACAATCAGCCTCCAATGTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACTGCAGGGAAAGACAAGTCCTACAATCAGCCTCCAATGTCAAT  550

seq1  TTAGTTCTATGGTTCTCTTAGCAAAGCCACATTTGAGATAGACAAGAAGA  600
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTAGTTCTATGGTTCTCTTAGC-AAGCCACATTTGAGATAGACAAGAAGA  599

seq1  TCAAAAGCTTAGTTCTTAATCTGACCCAAACCAGGC  636
      ||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCTTAGTTCTTAATCTGACCCAAACCAGGC  635