BAC Information

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BAC

Clone NameB6Ng01-166A08
Chromosome1 (Build37)2 (Build37)
Map Location 195,273,026 - 195,274,183172,602,396 - 172,602,638
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKcnh1, Hhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
Downstream geneLOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166A08.bB6Ng01-166A08.g
ACCDH957919DH957920
length1,151167
definitionDH957919|Mus musculus domesticus DNA, BAC clone: B6Ng01-166A08, 5' end.DH957920|Mus musculus domesticus DNA, BAC clone: B6Ng01-166A08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(195,273,026 - 195,274,183)(172,602,396 - 172,602,638)
sequence
gaattcctttcatcagcttggcctgtaggtaagtgtgtaggggcatcttt
ttgattgctaattgatggaagaaggcccagcccattttgggcagtgtggg
cctaggtggtataaggaagcaaggtgagcaagtcttggagagcaagctgc
acctctgtgttctcggcttcagcttctgccttgacttccctctaagacaa
actgcaacttataagccaaagaaactctttgctccccaaattgcttttgg
tgagaagtttatcacaacaatagagaaacaaactagggcatctctgacca
cttctagctggggactaaggcttcgttcgatgcacatttagtctgcagct
ggtagcactgttttaagagtttcttttaagaagtgggttttagcaagagg
aagtgggttgctgtatggtgggcctgagttctctctctttctctttccct
ctttccctccctttttgcttccccccaaactgctaagatgtaaagtgttc
cagtggcattcctttgccactgctgtgagccatatactatccatcaggcc
tcttgtcagggtgagaagagtaaccagtatatgtgacctcagtgagacat
gacctcctgtcttcagttccagcctccttcacactccagagtggtgtctg
ctctgtgagtccccaagcctttgtagtactgtcggtatagactgcctcac
ttatgaggtatctctactgctggcttcgggttaacattttgtttgcttag
tcattaaggtacgactctgttttgcagcttctaacattttgttgcttgta
tcattttgtttctatgcttttgagaacctgtgctttgaaaatccctttgc
agtaatattaacaaggctgcgagaacaagcaaaagtaactgcatgtttga
tcactccttatttagaattctttattctcttcctttggattaaaccaccc
aggatagtctaatcatagcagctttagtcatctctctacatctgcacttt
cagagcttctctgaagatgatgtgtgtgtgtgttttttgcacattgcata
tatttgagaccgtgcagacattgcatgttacgagcatgcctgcagaccct
aaagctacgttttgctgatcccttgagattatttgcacgctagcaaatgg
g
tgtggtctaacaaaattaaataaggtgaatagtaagtcaggtcacagctc
tgtcacctgctagtgtgcctgtgcatgtgtgtgcatgtgtacatacatgc
atgagtgtgcatgtatatatgtacaaacgcacatgcatgtgtgcatgttt
gtgtgcatatgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_195273026_195274183
seq2: B6Ng01-166A08.b_46_1196

seq1  GAATTCCTTTCATCAGCTTGGCCTGTAGGTAAGTGTGTAGGGGCATCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCATCAGCTTGGCCTGTAGGTAAGTGTGTAGGGGCATCTTT  50

seq1  TTGATTGCTAATTGATGGAAGAAGGCCCAGCCCATTTTGGGCAGTGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGCTAATTGATGGAAGAAGGCCCAGCCCATTTTGGGCAGTGTGGG  100

seq1  CCTAGGTGGTATAAGGAAGCAAGGTGAGCAAGTCTTGGAGAGCAAGCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTGGTATAAGGAAGCAAGGTGAGCAAGTCTTGGAGAGCAAGCTGC  150

seq1  ACCTCTGTGTTCTCGGCTTCAGCTTCTGCCTTGACTTCCCTCTAAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGTGTTCTCGGCTTCAGCTTCTGCCTTGACTTCCCTCTAAGACAA  200

seq1  ACTGCAACTTATAAGCCAAAGAAACTCTTTGCTCCCCAAATTGCTTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAACTTATAAGCCAAAGAAACTCTTTGCTCCCCAAATTGCTTTTGG  250

seq1  TGAGAAGTTTATCACAACAATAGAGAAACAAACTAGGGCATCTCTGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTTTATCACAACAATAGAGAAACAAACTAGGGCATCTCTGACCA  300

seq1  CTTCTAGCTGGGGACTAAGGCTTCGTTCGATGCACATTTAGTCTGCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGCTGGGGACTAAGGCTTCGTTCGATGCACATTTAGTCTGCAGCT  350

seq1  GGTAGCACTGTTTTAAGAGTTTCTTTTAAGAAGTGGGTTTTAGCAAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCACTGTTTTAAGAGTTTCTTTTAAGAAGTGGGTTTTAGCAAGAGG  400

seq1  AAGTGGGTTGCTGTATGGTGGGCCTGAGTTCTCTCTCTTTCTCTTTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGTTGCTGTATGGTGGGCCTGAGTTCTCTCTCTTTCTCTTTCCCT  450

seq1  CTTTCCCTCCCTTTTTGCTTCCCCCCAAACTGCTAAGATGTAAAGTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTCCCTTTTTGCTTCCCCCCAAACTGCTAAGATGTAAAGTGTTC  500

seq1  CAGTGGCATTCCTTTGCCACTGCTGTGAGCCATATACTATCCATCAGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCATTCCTTTGCCACTGCTGTGAGCCATATACTATCCATCAGGCC  550

seq1  TCTTGTCAGGGTGAGAAGAGTAACCAGTATATGTGACCTCAGTGAGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCAGGGTGAGAAGAGTAACCAGTATATGTGACCTCAGTGAGACAT  600

seq1  GACCTCCTGTCTTCAGTTCCAGCCTCCTTCACACTCCAGAGTGGTGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCTGTCTTCAGTTCCAGCCTCCTTCACACTCCAGAGTGGTGTCTG  650

seq1  CTCTGTGAGTCCCCAAGCCTTTGTAGTACTGTCGGTATAGACTGCCTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGAGTCCCCAAGCCTTTGTAGTACTGTCGGTATAGACTGCCTCAC  700

seq1  TTATGAGGTATCTCTACTGCTGGCTTCGGGTTAACATTTTGTTTGCTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGGTATCTCTACTGCTGGCTTCGGGTTAACATTTTGTTTGCTTAG  750

seq1  TCATTAAGGTACGACTCTGTTTTGCAGCTTCTAACATTTTGTTGCTTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAGGTACGACTCTGTTTTGCAGCTTCTAACATTTTGTTGCTTGTA  800

seq1  TCATTTTGTTTCTATGCTTTTGAGAACCTGTGCTTTGAAAATCCCTTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTTTCTATGCTTTTGAGAACCTGTGCTTTGAAAATCCCTTTGC  850

seq1  AGTAATATTAACAAGGCTGCGAGAACAAGCAAAAGTAACTGCATGTTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATTAACAAGGCTGCGAGAACAAGCAAAAGTAACTGCATGTTTGA  900

seq1  TCACTCCTTATTTAGAATTCTTTATTCTCTTCCTTTGGATTAAAACCACC  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCACTCCTTATTTAGAATTCTTTATTCTCTTCCTTTGGATT-AAACCACC  949

seq1  CAGGATAGTCTAATCATAGCAGGCTTTAGTCATCTCTCTACCATCTGCAC  1000
      ||||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  CAGGATAGTCTAATCATAGCA-GCTTTAGTCATCTCTCTA-CATCTGCAC  997

seq1  TTTCAGAGCCTTCTCTGAAGATAGATTGTGTGTGTGTG-TGTGTGCACA-  1048
      |||||||| ||||||||||||| || |||||||||||| | | |||||| 
seq2  TTTCAGAG-CTTCTCTGAAGAT-GA-TGTGTGTGTGTGTTTTTTGCACAT  1044

seq1  TGCATATATTTGAGACCGTGCAGACATATGCATG-TACGAGCATGCCTGC  1097
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  TGCATATATTTGAGACCGTGCAGACAT-TGCATGTTACGAGCATGCCTGC  1093

seq1  AGACCCTAAAGCTACGGTTTTGCTGGATTCCCTGAGAATGTATTGCAGCA  1147
      ||||||||||||||| |||||||| ||| || ||||| | | |||||   
seq2  AGACCCTAAAGCTAC-GTTTTGCT-GATCCCTTGAGATTAT-TTGCACGC  1140

seq1  TAGCAAATGGG  1158
      |||||||||||
seq2  TAGCAAATGGG  1151

seq1: chr2_172602396_172602638
seq2: B6Ng01-166A08.g_145_242 (reverse)

seq1  CACACACATATGCACACACATTCATTCATTCATTCATTCATTCATACATA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTCACATGCACACACACATACATGCAAACATGCACATGCAAAGATACACA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TACATGGACACACATGCTCACATGTACACACACATGACATACATGCAAAG  150
                                |||||||||       ||||    
seq2  --------------------------CACACACAT-------ATGC----  13

seq1  ACACATACTTATACATGCACTCACATGAGCACACATGCATATGTAC----  196
      ||||      | |||||||  ||||||    ||  ||| | |||||    
seq2  ACAC------AAACATGCA--CACATG----CATGTGCGTTTGTACATAT  51

seq1  ACACATTTACATACATGCACATAGACACACATGCACACACATGCACA  243
      | ||||  |||  ||||||  ||   |||||||||||||||||||||
seq2  ATACATGCACACTCATGCATGTATGTACACATGCACACACATGCACA  98