BAC Information

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BAC

Clone NameB6Ng01-166F03
Chromosome2 (Build37)
Map Location 180,968,089 - 181,078,926
singlet/doubletdoublet
Overlap geneBC006779, Gmeb2, EG665467, Stmn3, Rtel1
Upstream geneRps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628
Downstream geneArfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166F03.bB6Ng01-166F03.g
ACCDH958133DH958134
length3811,113
definitionDH958133|Mus musculus domesticus DNA, BAC clone: B6Ng01-166F03, 5' end.DH958134|Mus musculus domesticus DNA, BAC clone: B6Ng01-166F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,078,546 - 181,078,926)(180,968,089 - 180,969,209)
sequence
gggggctgacaagatggctcagcaggtaagagtactgactgctcttccag
aggtcctgagttcaaatcccaacaaccacatggtggctcacaaccacccg
taatgagatctaatgagatctgacaccctcttctggtatgtgtaaagaca
gcaacagtgtactcatttatagtaataaataaatctttggggggaaaaaa
aaagaattccagctgactaagagactagttcccccaacttagcaaaatgg
tatgtgataagaggaaaacctgactctagagtgtgagtacatttacatat
gcaggtatatgtgaatgtgtgtaagatgaatgctcactacatgtgtgact
gagatgagcaaagggggctgggggggggggg
gaattcagccacatggctgttaaactggatcatgtactcttggaccatga
tgtgagctgtgcggaagcccagcacactgtcctcgtctggcggctcatag
taacaggcagctgagaggcgctggcgacgtaacatccaagagaagtagca
ggcagctacaacacaggcctccacagagtccaggtgggctggaagctcca
ggccagccccagggtgtctcttgatcagttcttcggcttcctcatacgac
agctggcggtcagagcggattatggagggtgcaaatcgcaggctcttgat
ctggccaccacctttctccatggtgaggaagagagagatggcgaggcgat
cctgaccagggagaaggctgagtgcatcctggcacaagctggcgggcagc
atgagtactggctccctattgggggcatagaacacagttccctgctggcg
ggcttccacgtccagggccccatccttgggcaccaagctggccacatcag
caatatgcactgccacctcgtacactgggcctaggtctcggacactaaga
gcgtcgtcaaggttgcaggcaccctgggggtccacagtgaaggtcaggaa
gtggcggtagtcctctcggtgaccagcggccgtgtttagctctgagcggt
atctctgcagagccttggaaactgaggctgggtctggtgtgtgggccttc
aggccatgctctaggtcaaggatataaaggccctgctcccaggtgatggc
cttgggcagcacctccaggacaatgcctagtggatagtagaaacgttccc
gccaaaggacaatacggacccagaaaagccgggtgctccgatcctcagct
tgagggtctcatgcctcacacgctgcacctggccttgaatgagcggtgga
tgggaacttgctgtgggtccttcatctctgccacaaaatcttagtcacag
aaccgttgatagggatcatgatgcgggggtcccactcatccatcgaaaca
caaagcaattcgtgctctcttcttcaacacaccatcacacgacctgcagg
ctcccagggacgcacctgtcatctcttgccggaccaggaatctgtactta
gcacctccatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_181078546_181078926
seq2: B6Ng01-166F03.b_56_436 (reverse)

seq1  CCCCCCCCCCCCAGCCCCCTTTGCTCATCTCAGTCACACATGTAGTGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCAGCCCCCTTTGCTCATCTCAGTCACACATGTAGTGAGC  50

seq1  ATTCATCTTACACACATTCACATATACCTGCATATGTAAATGTACTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTTACACACATTCACATATACCTGCATATGTAAATGTACTCACA  100

seq1  CTCTAGAGTCAGGTTTTCCTCTTATCACATACCATTTTGCTAAGTTGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGTCAGGTTTTCCTCTTATCACATACCATTTTGCTAAGTTGGGG  150

seq1  GAACTAGTCTCTTAGTCAGCTGGAATTCTTTTTTTTTCCCCCCAAAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGTCTCTTAGTCAGCTGGAATTCTTTTTTTTTCCCCCCAAAGATT  200

seq1  TATTTATTACTATAAATGAGTACACTGTTGCTGTCTTTACACATACCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTACTATAAATGAGTACACTGTTGCTGTCTTTACACATACCAGA  250

seq1  AGAGGGTGTCAGATCTCATTAGATCTCATTACGGGTGGTTGTGAGCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTGTCAGATCTCATTAGATCTCATTACGGGTGGTTGTGAGCCACC  300

seq1  ATGTGGTTGTTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTGTTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTAC  350

seq1  TCTTACCTGCTGAGCCATCTTGTCAGCCCCC  381
      |||||||||||||||||||||||||||||||
seq2  TCTTACCTGCTGAGCCATCTTGTCAGCCCCC  381

seq1: chr2_180968089_180969209
seq2: B6Ng01-166F03.g_66_1178

seq1  GAATTCAGCCACATGGCTGTTAAACTGGATCATGTACTCTTGGACCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCACATGGCTGTTAAACTGGATCATGTACTCTTGGACCATGA  50

seq1  TGTGAGCTGTGCGGAAGCCCAGCACACTGTCCTCGTCTGGCGGCTCATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTGTGCGGAAGCCCAGCACACTGTCCTCGTCTGGCGGCTCATAG  100

seq1  TAACAGGCAGCTGAGAGGCGCTGGCGACGTAACATCCAAGAGAAGTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGCAGCTGAGAGGCGCTGGCGACGTAACATCCAAGAGAAGTAGCA  150

seq1  GGCAGCTACAACACAGGCCTCCACAGAGTCCAGGTGGGCTGGAAGCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTACAACACAGGCCTCCACAGAGTCCAGGTGGGCTGGAAGCTCCA  200

seq1  GGCCAGCCCCAGGGTGTCTCTTGATCAGTTCTTCGGCTTCCTCATACGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCCCAGGGTGTCTCTTGATCAGTTCTTCGGCTTCCTCATACGAC  250

seq1  AGCTGGCGGTCAGAGCGGATTATGGAGGGTGCAAATCGCAGGCTCTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCGGTCAGAGCGGATTATGGAGGGTGCAAATCGCAGGCTCTTGAT  300

seq1  CTGGCCACCACCTTTCTCCATGGTGAGGAAGAGAGAGATGGCGAGGCGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCACCACCTTTCTCCATGGTGAGGAAGAGAGAGATGGCGAGGCGAT  350

seq1  CCTGACCAGGGAGAAGGCTGAGTGCATCCTGGCACAAGCTGGCGGGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCAGGGAGAAGGCTGAGTGCATCCTGGCACAAGCTGGCGGGCAGC  400

seq1  ATGAGTACTGGCTCCCTATTGGGGGCATAGAACACAGTTCCCTGCTGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTACTGGCTCCCTATTGGGGGCATAGAACACAGTTCCCTGCTGGCG  450

seq1  GGCTTCCACGTCCAGGGCCCCATCCTTGGGCACCAAGCTGGCCACATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCACGTCCAGGGCCCCATCCTTGGGCACCAAGCTGGCCACATCAG  500

seq1  CAATATGCACTGCCACCTCGTACACTGGGCCTAGGTCTCGGACACTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGCACTGCCACCTCGTACACTGGGCCTAGGTCTCGGACACTAAGA  550

seq1  GCGTCGTCAAGGTTGCAGGCACCCTGGGGGTCCACAGTGAAGGTCAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCGTCAAGGTTGCAGGCACCCTGGGGGTCCACAGTGAAGGTCAGGAA  600

seq1  GTGGCGGTAGTCCTCTCGGTGACCAGCGGCCGTGTTTAGCTCTGAGCGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGGTAGTCCTCTCGGTGACCAGCGGCCGTGTTTAGCTCTGAGCGGT  650

seq1  ATCTCTGCAGAGCCTTGGAAACTGAGGCTGGGTCTGGTGTGTGGGCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGCAGAGCCTTGGAAACTGAGGCTGGGTCTGGTGTGTGGGCCTTC  700

seq1  AGGCCATGCTCTAGGTCAAGGATATAAAGGCCCTGCTCCCAGGTGATGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATGCTCTAGGTCAAGGATATAAAGGCCCTGCTCCCAGGTGATGGC  750

seq1  CTTGGGCAGCACCTCCAGGACAATGCCTAGTGGATAGTAGAAACGTTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCAGCACCTCCAGGACAATGCCTAGTGGATAGTAGAAACGTTCCC  800

seq1  GCCAAAGGACAATACGGACCCAGAAAAGCCGGGTGCTCCGATCCTCAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCCAAAGGACAATACGGACCCAGAAAAGCCGGGTGCTCCGATCCTCA-GC  849

seq1  TTGAGGGTCTCATGCCTCACACGCTGCACCTGGCCTTGAATGAGGCGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGAGGGTCTCATGCCTCACACGCTGCACCTGGCCTTGAATGA-GCGGTG  898

seq1  GATGGGAACTTGCTGTGGGTCCTTCATCTCTGCCACAAAAATCTTAGTCA  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GATGGGAACTTGCTGTGGGTCCTTCATCTCTGCCAC-AAAATCTTAGTCA  947

seq1  CAGAACCGTTGATAGGGATCATGATGCGGGGGTCCCACTCATCCATCCGA  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGAACCGTTGATAGGGATCATGATGCGGGGGTCCCACTCATCCAT-CGA  996

seq1  CACACAAAGGCCAATTCGTGCCTCCTCCTCTTCAACACACCCATCACACG  1050
       ||||||||  ||||||||||   ||| ||||||||||| ||||||||||
seq2  AACACAAAG--CAATTCGTGC--TCTCTTCTTCAACACA-CCATCACACG  1041

seq1  ACCCTGCAGGCTCCCAGGGACGCACCTGTCATCTCCTGCCGGACCCAGGA  1100
      | ||||||||||||||||||||||||||||||||| |||||||||  | |
seq2  A-CCTGCAGGCTCCCAGGGACGCACCTGTCATCTCTTGCCGGACCAGGAA  1090

seq1  TCTGTAC-TAGCACCT-CATCCC  1121
      ||||||| |||||||| ||||||
seq2  TCTGTACTTAGCACCTCCATCCC  1113