BAC Information

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BAC

Clone NameB6Ng01-166I04
Chromosome2 (Build37)
Map Location 73,659,594 - 73,835,176
singlet/doubletdoublet
Overlap geneAtf2, Atp5g3, LOC667729
Upstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1
Downstream geneLOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166I04.bB6Ng01-166I04.g
ACCDH958272DH958273
length1,1911,206
definitionDH958272|Mus musculus domesticus DNA, BAC clone: B6Ng01-166I04, 5' end.DH958273|Mus musculus domesticus DNA, BAC clone: B6Ng01-166I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,659,594 - 73,660,796)(73,833,854 - 73,835,176)
sequence
gaattcaaccctctccctctctgatgcgtgagtacacattacaagacaag
ataccctgttttcagaaggtggaaggagaaaaccaaatgtaactaactac
tttccaaacaaaaatctctttcttgcattttcataagagaagtttactaa
gaagttatgaatgtaggttttcaacctattcaacaacagatacattaaca
cttctgtatgcttaaaattatataaaacaatcattaatcactggtttgca
tataatatctacataataattaaaagttaggattatccaattagtaataa
gattttaaaattgtagattattgtcaattagatacaatgtaagagttaat
ttttttctaattttaacaaaatcatcacatatttccttttaagccatcac
aatccagtgcagctttcttgcataatgttgaactcagtagcatctacagg
aaattaagctaagtcagatgggaaccatagtggactaatccctacagcaa
tcactgatatataaatcccaagcatatttctgtatggttccaatttattc
cacagtgtgtttcactgtcctgtcaaaatgactagatatcaaataacaga
gacttatatactcaaaacagacaaaaataagtattctaaatagatatggc
aattgagaatagctatgtctacagaattttttaaattaaaaaatattgct
cattttgatgaaactgcttacaatagactacaagtaaagatggtggccat
taagttttattgtaagtacctgaggagctgtttgcatctaacacaaaatg
tttccttcttttgaattactgacattggcaaattaaaatgaagtggttac
atatggttgaaacaatcttcacatttacaaatatcctgaaatatcactaa
atcataaaaaagaaaacaaggccgtgggttatgtattatgaatgtagcct
aatgcatccccagctctttatttgtatgaatttgtgtgtgaccgacaact
tggccatttactcagagtacagctggttccaaactggtgcattcttgtca
gaagacatcagagaatgaaaagcacaactaacttcttacaagctcacaga
agatcctcatttaggagagaacccattacaaaggaattataagcaatcat
ttcaatacggtctgcttagcaatttttatgccgtgtgacaa
gaattccttacagatattaattcatttaaaccgcatataacccataggaa
ctaactttggtttcactctaaggaggtcaggcatgtcctctatgtcatat
tgctgccaaggctgagctatgagccccacttaccgacctcagagtctgtg
gccttgacttctcttctgctttcaaaacaatacagtaacaagaacaaaac
agcatttatttggcatctacctagtataaatattctatttgatgttttat
ttcttcttgcataattctgcagataggtcttacaggtggaaaaattaaga
cttaatggaaggagctgaacctgctccaagtcaactcaatcaataggtac
gcctagagtcaaatataattttgtatggtccaaaaaaattatttcctgga
gtcaaggtaaaacctgatcactggatttccattccaccaactagcaagga
tggttgagcgcatgcaaaaggaggggccagggaaactccatgtgtgtgct
aaatattattccttcccttttggtaagaaagtacactttggctccaagac
aaaagtattatcaaactcccaagcggtgagtttgttactaaatggtgttc
aaatattctaaggcatttgaaagaggatgttccacactgatatctttgtc
tgtgtggcatggtagagggaggagagacgtgatgacataaacacttacac
agagaggttctcagacacagtaaggtccgggatttgtcactcccctcaaa
aatgaatattggatttgtgaagtctgtgctggaatttgctcctccatacc
agaataggaagtggcatttggatcaacacccagaaagaagcatggtcatc
agttcacaggcgctaacttgtgtctggataggatgctgagtttcttcccc
tctgtgctactgctgtatggggagatgggaaccacagtctctccaagaca
ctcatgggccgccgtctaccttccatatgctatttctctgcgctgcgcct
ttgacatttagcatttagccttttctgcttttccctcctatcatctcaag
cgtggtagctcttaacctcatgaggtaggttcaggtgggacatcccactg
ctttacaactatagaattcccaatgtccacgcaggacctggccttttgtc
ccatgctacatgcctaattgttacatgacatgcagatcggcaatgggaaa
tggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_73659594_73660796
seq2: B6Ng01-166I04.b_46_1236

seq1  GAATTCAACCCTCTCCCTCTCTGATGCGTGAGTACACATTACAAGACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCTCTCCCTCTCTGATGCGTGAGTACACATTACAAGACAAG  50

seq1  ATACCCTGTTTTCAGAAGGTGGAAGGAGAAAACCAAATGTAACTAACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTGTTTTCAGAAGGTGGAAGGAGAAAACCAAATGTAACTAACTAC  100

seq1  TTTCCAAACAAAAATCTCTTTCTTGCATTTTCATAAGAGAAGTTTACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAACAAAAATCTCTTTCTTGCATTTTCATAAGAGAAGTTTACTAA  150

seq1  GAAGTTATGAATGTAGGTTTTCAACCTATTCAACAACAGATACATTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATGAATGTAGGTTTTCAACCTATTCAACAACAGATACATTAACA  200

seq1  CTTCTGTATGCTTAAAATTATATAAAACAATCATTAATCACTGGTTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTATGCTTAAAATTATATAAAACAATCATTAATCACTGGTTTGCA  250

seq1  TATAATATCTACATAATAATTAAAAGTTAGGATTATCCAATTAGTAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATCTACATAATAATTAAAAGTTAGGATTATCCAATTAGTAATAA  300

seq1  GATTTTAAAATTGTAGATTATTGTCAATTAGATACAATGTAAGAGTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAAATTGTAGATTATTGTCAATTAGATACAATGTAAGAGTTAAT  350

seq1  TTTTTTCTAATTTTAACAAAATCATCACATATTTCCTTTTAAGCCATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTAATTTTAACAAAATCATCACATATTTCCTTTTAAGCCATCAC  400

seq1  AATCCAGTGCAGCTTTCTTGCATAATGTTGAACTCAGTAGCATCTACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGTGCAGCTTTCTTGCATAATGTTGAACTCAGTAGCATCTACAGG  450

seq1  AAATTAAGCTAAGTCAGATGGGAACCATAGTGGACTAATCCCTACAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGCTAAGTCAGATGGGAACCATAGTGGACTAATCCCTACAGCAA  500

seq1  TCACTGATATATAAATCCCAAGCATATTTCTGTATGGTTCCAATTTATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATATATAAATCCCAAGCATATTTCTGTATGGTTCCAATTTATTC  550

seq1  CACAGTGTGTTTCACTGTCCTGTCAAAATGACTAGATATCAAATAACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGTGTTTCACTGTCCTGTCAAAATGACTAGATATCAAATAACAGA  600

seq1  GACTTATATACTCAAAACAGACAAAAATAAGTATTCTAAATAGATATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATATACTCAAAACAGACAAAAATAAGTATTCTAAATAGATATGGC  650

seq1  AATTGAGAATAGCTATGTCTACAGAATTTTTTAAATTAAAAAATATTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGAATAGCTATGTCTACAGAATTTTTTAAATTAAAAAATATTGCT  700

seq1  CATTTTGATGAAACTGCTTACAATAGACTACAAGTAAAGATGGTGGCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGATGAAACTGCTTACAATAGACTACAAGTAAAGATGGTGGCCAT  750

seq1  TAAGTTTTATTGTAAGTACCTGAGGAGCTGTTTGCATCTAACACAAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTATTGTAAGTACCTGAGGAGCTGTTTGCATCTAACACAAAATG  800

seq1  TTTCCTTCTTTTGAATTACTGACATTGGCAAATTAAAATGAAGTGGTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTTTTGAATTACTGACATTGGCAAATTAAAATGAAGTGGTTAC  850

seq1  ATATGGTTGAAACAATCTTCACATTTACAAATATCCTGAAATATCACTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTGAAACAATCTTCACATTTACAAATATCCTGAAATATCACTAA  900

seq1  ATCATAAAAAAGAAAACAAGGCCGTGGGTTATGTATTATGAATGTAGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAAAAAGAAAACAAGGCCGTGGGTTATGTATTATGAATGTAGCCT  950

seq1  AATGCATCCCCAGCTCTTTTATTTGTTATGAATTTGTGTGTGACCGACAA  1000
      |||||||||||||||| |||||||| |||||||||||||||||||||| |
seq2  AATGCATCCCCAGCTC-TTTATTTG-TATGAATTTGTGTGTGACCGAC-A  997

seq1  ACTTGGCCATTTACTCAGGAGTAACAGCTGGTTCCCAAACT-GTGCA-TC  1048
      ||||||||||||||||| |||| |||||||||| ||||||| ||||| ||
seq2  ACTTGGCCATTTACTCA-GAGT-ACAGCTGGTT-CCAAACTGGTGCATTC  1044

seq1  TTGTCAAGAAGGACATCAGAGAATGAAAAAGCACAACTAACCTCTACCAA  1098
      ||||| |||| |||||||||||||| ||||||||||||||| |||  |||
seq2  TTGTC-AGAA-GACATCAGAGAATG-AAAAGCACAACTAACTTCTTACAA  1091

seq1  GCTCACAGAAGAACCTCATTTTAGGAGAGGAACACATTTACAAAGGAATT  1148
      |||||||||||| ||||| ||||||||| |||| || ||||||||||| |
seq2  GCTCACAGAAGATCCTCA-TTTAGGAGA-GAACCCA-TTACAAAGGAA-T  1137

seq1  TATAAGCAAATCATTTCAATACAGTTCTGCTTTAGC-ATTTTTATGGC-T  1196
      ||||||| |||||||||||||| | ||||| ||||| ||||||||| | |
seq2  TATAAGC-AATCATTTCAATAC-GGTCTGC-TTAGCAATTTTTATGCCGT  1184

seq1  GTGACAA  1203
      |||||||
seq2  GTGACAA  1191

seq1: chr2_73833854_73835176
seq2: B6Ng01-166I04.g_66_1271 (reverse)

seq1  CTACCATTTGTATGCAATGAAGGAGATTAAAGTGCTTGGAATTACTTGTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTGTTTATAGGTATGAACAAAATACTAAACGATTTCACGACTACGTAC  100
                                                     |||
seq2  ----------------------------------------------CTAC  4

seq1  CATTT-CCATTGCCGTCTTTGCTATGTC-TGTAACAATATAGGCCATGCT  148
      ||||| |||||||||  | ||| ||||| ||||||||| |||| ||||  
seq2  CATTTCCCATTGCCG-ATCTGC-ATGTCATGTAACAAT-TAGG-CATG--  48

seq1  AAGCAATGGGGCAAAAGACCAGGTCCTGCTGTGACATTTGGAA-TCTATA  197
       ||| ||||| |||||| |||||||||||   |||||| |||| ||||||
seq2  TAGC-ATGGGACAAAAGGCCAGGTCCTGCGTGGACATTGGGAATTCTATA  97

seq1  GTTGGTGAAGCAGGTGGGATGGTTTCCAACCTGAACCCTTAACTTCATGA  247
      ||| || ||||| ||||||||   ||| |||||||||    || ||||||
seq2  GTT-GTAAAGCA-GTGGGATG---TCCCACCTGAACC---TACCTCATGA  139

seq1  GGTTAAAGAGCTAACAACGCTTGAGAATGATAGGAGGGAAAAGCAGGAAA  297
      |||| ||||||| || ||||||||| ||||||||||||||||||| ||||
seq2  GGTT-AAGAGCT-ACCACGCTTGAG-ATGATAGGAGGGAAAAGCA-GAAA  185

seq1  AGGCTAAATGCTAAATGTCAAAAGGCGCAGGCGCAGAGAAATAGCATTAT  347
      ||||||||||||||||||| ||||||||| |||||||||||||||||   
seq2  AGGCTAAATGCTAAATGTC-AAAGGCGCA-GCGCAGAGAAATAGCAT--A  231

seq1  TGGAAGGTAGACGGCGGCCCATGAGTGTCTTTGGAGAGACTGTGGTTCCC  397
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGAAGGTAGACGGCGGCCCATGAGTGTC-TTGGAGAGACTGTGGTTCCC  280

seq1  ATCTCCCCATACAGCAGTAGCACAGAGGGGAAGAAACTCAGCATCCTATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCCATACAGCAGTAGCACAGAGGGGAAGAAACTCAGCATCCTATC  330

seq1  CAGACACAAGTTAGCGCCTGTGAACTGATGACCATGCTTCTTTCTGGGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAAGTTAGCGCCTGTGAACTGATGACCATGCTTCTTTCTGGGTG  380

seq1  TTGATCCAAATGCCACTTCCTATTCTGGTATGGAGGAGCAAATTCCAGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCAAATGCCACTTCCTATTCTGGTATGGAGGAGCAAATTCCAGCA  430

seq1  CAGACTTCACAAATCCAATATTCATTTTTGAGGGGAGTGACAAATCCCGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTCACAAATCCAATATTCATTTTTGAGGGGAGTGACAAATCCCGG  480

seq1  ACCTTACTGTGTCTGAGAACCTCTCTGTGTAAGTGTTTATGTCATCACGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACTGTGTCTGAGAACCTCTCTGTGTAAGTGTTTATGTCATCACGT  530

seq1  CTCTCCTCCCTCTACCATGCCACACAGACAAAGATATCAGTGTGGAACAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCCCTCTACCATGCCACACAGACAAAGATATCAGTGTGGAACAT  580

seq1  CCTCTTTCAAATGCCTTAGAATATTTGAACACCATTTAGTAACAAACTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCAAATGCCTTAGAATATTTGAACACCATTTAGTAACAAACTCA  630

seq1  CCGCTTGGGAGTTTGATAATACTTTTGTCTTGGAGCCAAAGTGTACTTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTTGGGAGTTTGATAATACTTTTGTCTTGGAGCCAAAGTGTACTTTC  680

seq1  TTACCAAAAGGGAAGGAATAATATTTAGCACACACATGGAGTTTCCCTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAAAGGGAAGGAATAATATTTAGCACACACATGGAGTTTCCCTGG  730

seq1  CCCCTCCTTTTGCATGCGCTCAACCATCCTTGCTAGTTGGTGGAATGGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCTTTTGCATGCGCTCAACCATCCTTGCTAGTTGGTGGAATGGAA  780

seq1  ATCCAGTGATCAGGTTTTACCTTGACTCCAGGAAATAATTTTTTTGGACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTGATCAGGTTTTACCTTGACTCCAGGAAATAATTTTTTTGGACC  830

seq1  ATACAAAATTATATTTGACTCTAGGCGTACCTATTGATTGAGTTGACTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAATTATATTTGACTCTAGGCGTACCTATTGATTGAGTTGACTTG  880

seq1  GAGCAGGTTCAGCTCCTTCCATTAAGTCTTAATTTTTCCACCTGTAAGAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGTTCAGCTCCTTCCATTAAGTCTTAATTTTTCCACCTGTAAGAC  930

seq1  CTATCTGCAGAATTATGCAAGAAGAAATAAAACATCAAATAGAATATTTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGCAGAATTATGCAAGAAGAAATAAAACATCAAATAGAATATTTA  980

seq1  TACTAGGTAGATGCCAAATAAATGCTGTTTTGTTCTTGTTACTGTATTGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGTAGATGCCAAATAAATGCTGTTTTGTTCTTGTTACTGTATTGT  1030

seq1  TTTGAAAGCAGAAGAGAAGTCAAGGCCACAGACTCTGAGGTCGGTAAGTG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGCAGAAGAGAAGTCAAGGCCACAGACTCTGAGGTCGGTAAGTG  1080

seq1  GGGCTCATAGCTCAGCCTTGGCAGCAATATGACATAGAGGACATGCCTGA  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCATAGCTCAGCCTTGGCAGCAATATGACATAGAGGACATGCCTGA  1130

seq1  CCTCCTTAGAGTGAAACCAAAGTTAGTTCCTATGGGTTATATGCGGTTTA  1297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTAGAGTGAAACCAAAGTTAGTTCCTATGGGTTATATGCGGTTTA  1180

seq1  AATGAATTAATATCTGTAAGGAATTC  1323
      ||||||||||||||||||||||||||
seq2  AATGAATTAATATCTGTAAGGAATTC  1206