BAC Information

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BAC

Clone NameB6Ng01-168I05
Chromosome2 (Build37)15 (Build37)
Map Location 174,258,501 - 174,259,52789,175,049 - 89,175,338
singlet/doubletsingletsinglet
Overlap geneCtsz
Upstream gene1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l
Downstream geneRpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3, LOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168I05.bB6Ng01-168I05.g
ACCDH959733DH959734
length1,022660
definitionDH959733|Mus musculus domesticus DNA, BAC clone: B6Ng01-168I05, 5' end.DH959734|Mus musculus domesticus DNA, BAC clone: B6Ng01-168I05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(174,258,501 - 174,259,527)(89,175,049 - 89,175,338)
sequence
gaattctttctctgtaagtaaggcccatgagaccatccacatgccagctg
tgcacacgcacatgccacatccagtcatgcggtgctctgctttattttat
ttgtttgtttgtttacttttaagatttgagattgggtggggcagtggcgg
tgcacacctttaatcccagcacttgggaggcagaggcaagcagatttctg
agttcgaggccagcctggtctacagagtgagttccaggacagccagggct
atacagagaaaccctgtgtagaaagacaaaaaaaaaaaaaaaaattgaga
ttgagcctagggcctcatgtaaagtaagtaggccagcactctaccactga
gctaaatccccagtctggagtcctctgcagcattccaaccacatagtgtg
acagatatggagtaaatgtgagctctcagccactctcccttggaacgaga
caggtgtgtagcaatgtgggaacataggcagggtctaccttggtccttgg
cctggtagttgttgcaggtctcatcggggatgccatgcttgtgggcatac
tcccacaccggaaggtcattgcccccttcacaagagccagcattgccaca
gtcaatgacattctgtacggacagcaggatggagggccatgcacctttcc
tcttgatgttgattcggtctgtaagaggcagcactctggtcagcacccac
gttcccccaacaccaagactgccccagcaaacgtcccagggctctgcccc
acggtccttcagagactttctctggtcttcctcagcgccatgacatctgc
ctgtctgtctgcaagtgacatgaggcagggccgggtttagaggtcccaag
aacttgtaaagcatcactataggatggcaacgaaactactcctgtgagga
ggctagagaccagacacaccatacggggaaggctggggtgggcatctcag
ggaacaagggcagcctaggggagcagatgagtctcagtgggggcgacaca
gcactcattgctcacgtactac
gaattcctcactgaatcacatcagcatcaaacatctccctctaaagatgg
aggagcctgacctctggggagcagtcagacaggggctcctcagaatctgg
gtgccagcaaaagggtgcgacattttccaggggtgagagaaagagacaac
cgacactaactcttatatccattgattcttctccactaagatgtaaaaag
atggtctccgataaggggacaaaccagagcaatggctccaggcctgtggg
tcacaacccctttggaggtcccatagtagatatttacattaagattccaa
acgctgacaccattgcatacactagcaagatttttgctgaaaggaccctg
atatagctgtctcttgtgagactatgccgggcctagcaaacacagaagtg
gatgctcacagtcagctattggatggatcacagggcccccaatggaggag
ctagagaacgtacccaaggagctaaagggatctgcaaccctataggtgga
acaacattatgaactaaccagtaccctggagctcttgactctagctacat
atgtatcaaaagatggcctagtcagccatcactggaaagagaggcccatt
ggacacgcaaactttatatgccccagtacaggggaacaccagggccaaaa
agggggagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_174258501_174259527
seq2: B6Ng01-168I05.b_48_1069

seq1  GAATTCTTTCTCTGTAAGTAAGGCCCATGAGACCATCCACATGCCAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCTGTAAGTAAGGCCCATGAGACCATCCACATGCCAGCTG  50

seq1  TGCACACGCACATGCCACATCCAGTCATGCGGTGCTCTGCTTTATTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACGCACATGCCACATCCAGTCATGCGGTGCTCTGCTTTATTTTAT  100

seq1  TTGTTTGTTTGTTTACTTTTAAGATTTGAGATTGGGTGGGGCAGTGGCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTACTTTTAAGATTTGAGATTGGGTGGGGCAGTGGCGG  150

seq1  TGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAAGCAGATTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAAGCAGATTTCTG  200

seq1  AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCT  250

seq1  ATACAGAGAAACCCTGTGTAGAAAGACAAAAAAAAAAAAAAAAATTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGAAACCCTGTGTAGAAAGACAAAAAAAAAAAAAAAAATTGAGA  300

seq1  TTGAGCCTAGGGCCTCATGTAAAGTAAGTAGGCCAGCACTCTACCACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCTAGGGCCTCATGTAAAGTAAGTAGGCCAGCACTCTACCACTGA  350

seq1  GCTAAATCCCCAGTCTGGAGTCCTCTGCAGCATTCCAACCACATAGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATCCCCAGTCTGGAGTCCTCTGCAGCATTCCAACCACATAGTGTG  400

seq1  ACAGATATGGAGTAAATGTGAGCTCTCAGCCACTCTCCCTTGGAACGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATGGAGTAAATGTGAGCTCTCAGCCACTCTCCCTTGGAACGAGA  450

seq1  CAGGTGTGTAGCAATGTGGGAACATAGGCAGGGTCTACCTTGGTCCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTGTAGCAATGTGGGAACATAGGCAGGGTCTACCTTGGTCCTTGG  500

seq1  CCTGGTAGTTGTTGCAGGTCTCATCGGGGATGCCATGCTTGTGGGCATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAGTTGTTGCAGGTCTCATCGGGGATGCCATGCTTGTGGGCATAC  550

seq1  TCCCACACCGGAAGGTCATTGCCCCCTTCACAAGAGCCAGCATTGCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACACCGGAAGGTCATTGCCCCCTTCACAAGAGCCAGCATTGCCACA  600

seq1  GTCAATGACATTCTGTACGGACAGCAGGATGGAGGGCCATGCACCTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGACATTCTGTACGGACAGCAGGATGGAGGGCCATGCACCTTTCC  650

seq1  TCTTGATGTTGATTCGGTCTGTAAGAGGCAGCACTCTGGTCAGCACCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATGTTGATTCGGTCTGTAAGAGGCAGCACTCTGGTCAGCACCCAC  700

seq1  GTTCCCCCAACACCAAGACTGCCCCAGCAAACGTCCCAGGGCTCTGCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCCAACACCAAGACTGCCCCAGCAAACGTCCCAGGGCTCTGCCCC  750

seq1  ACGGTCCTTCAGAGACTTTCTCTGGTCTTCCTCAGCGCCATGACATCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCCTTCAGAGACTTTCTCTGGTCTTCCTCAGCGCCATGACATCTGC  800

seq1  CTGTCTGTCTGCAAGTGACATGAGGCAGGGCCGGGTTTAGAGGTCCCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCTGCAAGTGACATGAGGCAGGGCCGGGTTTAGAGGTCCCAAG  850

seq1  AACTTGTAAAGCATCACTATAGGATGGCAACGAAACTACTCCTGTGAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTAAAGCATCACTATAGGATGGCAACGAAACTACTCCTGTGAGGA  900

seq1  GGCTAGAGACCAGACACACCATACGGGGAAGGCTGGGGTGGGCATCTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  GGCTAGAGACCAGACACACCATACGGGGAAGGCTGGGGTGGGCATCTCAG  950

seq1  GGGACAAGGGCAGCCTAGGGGAGCCAGATGAGTCTCAGTGGGGGGCCGGA  1000
      || |||||||||||||||||||| ||||||||||||||||||||    ||
seq2  GGAACAAGGGCAGCCTAGGGGAG-CAGATGAGTCTCAGTGGGGG---CGA  996

seq1  CACCAGCACTCAGTGCTCACGTACTAC  1027
      || ||||||||| ||||||||||||||
seq2  CA-CAGCACTCATTGCTCACGTACTAC  1022

seq1: chr15_89175049_89175338
seq2: B6Ng01-168I05.g_447_728 (reverse)

seq1  CACTCCCCCCCCCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCA  50
      ||||||||        |||||||||||||| |||||||||||||||||||
seq2  CACTCCCC--------CTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCA  42

seq1  TATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGGCGACTA  100
      ||||||||||||  |||||||||||||||||||||||||||||  |||||
seq2  TATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCTGACTA  92

seq1  GGCCATCTTTTGGTACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTG  150
      |||||||||||| |||||||| ||||||||||||||||||| ||||||||
seq2  GGCCATCTTTTGATACATATGTAGCTAGAGTCAAGAGCTCCAGGGTACTG  142

seq1  GTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGATCTCTTTAGCTC  200
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  GTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTC  192

seq1  CTTGGATACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAA  250
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTACGTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAA  242

seq1  TAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCC  290
      ||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCC  282