BAC Information

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BAC

Clone NameB6Ng01-170J04
Chromosome2 (Build37)
Map Location 82,210,662 - 82,353,296
singlet/doubletdoublet
Overlap geneA130030D18Rik, EG624362, LOC433550
Upstream geneLOC100040704, Zfp804a, LOC100041308
Downstream geneLOC269292, LOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170J04.bB6Ng01-170J04.g
ACCDH961251DH961252
length1,024668
definitionDH961251|Mus musculus domesticus DNA, BAC clone: B6Ng01-170J04, 5' end.DH961252|Mus musculus domesticus DNA, BAC clone: B6Ng01-170J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,352,274 - 82,353,296)(82,210,662 - 82,211,333)
sequence
gaattccatcttgtgttcatgacacagtcagcattctcaacgatgtaaac
agttgtgtgtggtgggactatgccacaataaatgggtgagagcaagtcca
tcattcaagaacatcacaatgcatatacacaaattcagatggtggaactg
ttataggtcttggctatatggcacagttaattactcctaggaaacaaacc
tatacactatcctttttactatgtgctaactgtaacagtgttttaatgca
tcagtacagggaagttaagaacagatttttattgattctgaatgttgcat
actgtgttgttgtcctgtccttaactcctgggttgcctccttgtccagcc
tttatgaaagggtttattcctagccttattgtaacttgttgtgtcatgtt
tggttggtagctctgggaaataccctgggaacgctgccctctcagagtcg
aatgaggaggaggaactctgtgaagggggggactatgagtgggggcacca
tttgggatgtaaataaataaataaataaatactaagtaggcacaaacata
agtaataatgcaagcattgtaaacatgaaaagtaacaaagcacttaaaag
cacttattatcattagcttttatatcctccacataactttatatgttgta
atttaataccacgggcaagacacatttgtttataccagcacaccacaaca
tatgaaagatttatcctgctatgttgttacaacagctatgtctctaaaat
gcagaaagttttcagcacctttcattcttaagggacaacctcaccatctg
cagattctaacactggttgaggtgttttaagcaagtatagctgcatatat
atgatgtttttgacttattttaaacatttcttttttctcctctccttctc
ctttcctaagcatgcctctttcatctatctgttctttctcctcttccttg
ttctttcttctctttttcactcctctgtctgtctctgtctctctctctct
ctccactctctctctctctctctc
gaattcttgcctaatactgaaaaacaaatttaaaacaatcagggaggctt
acacccttcagaaaaattgattatgcctgtgtaattaaattaatatgacc
ctcttgtctctcttaagcttttgcccctcttactctcacctcttgccctc
tctctccccctccttcccgccaccccctccatgtggccatggccactctc
tgcttctttactcttctctctctctctctctctctctctctctctctctc
tctctctctctcactcacacacacacacacacatttacaacacatctcta
aaacgataaaaaaataaaaactttttgagagggataaaccaagaaattgg
aatgaaatatgggggataatcgcgggactctcactatagggtaggggtga
tatatatatatatatagatataaatggaacgggagaggaaaacacttact
caattataaacaaacggtctatgtctgtgtaaaagaaaaaatgtttttct
tccaaggatgcgcgcgcatttgaacttttcattgtgagttggatagcccc
tgacacatgtagaaatacacagagtgagtgtgctaatttggttatataca
cacacacccccactctcggacagatatataccaagagcgaaaacacacac
agcatatgcacacataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_82352274_82353296
seq2: B6Ng01-170J04.b_44_1067 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGACAGAGACAGACAG  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGTGGAGAGAGAGAGAGAGACAGAGACAGACAG  50

seq1  AGGAGTGAAAAAGAGAAGAAAGAACAAGGAAGAGGAGAAAGAACAGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGAAAAAGAGAAGAAAGAACAAGGAAGAGGAGAAAGAACAGATAG  100

seq1  ATGAAAGAGGCATGCTTAGGAAAGGAGAAGGAGAGGAGAAAAAAGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAGGCATGCTTAGGAAAGGAGAAGGAGAGGAGAAAAAAGAAATG  150

seq1  TTTAAAATAAGTCAAAAACATCATATATATGCAGCTATACTTGCTT-AAA  199
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTAAAATAAGTCAAAAACATCATATATATGCAGCTATACTTGCTTAAAA  200

seq1  CACCTCAACCAGTGTTAGAATCTGCAGATGGTGAGGTTGTCCCTTAAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAACCAGTGTTAGAATCTGCAGATGGTGAGGTTGTCCCTTAAGAA  250

seq1  TGAAAGGTGCTGAAAACTTTCTGCATTTTAGAGACATAGCTGTTGTAACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGTGCTGAAAACTTTCTGCATTTTAGAGACATAGCTGTTGTAACA  300

seq1  ACATAGCAGGATAAATCTTTCATATGTTGTGGTGTGCTGGTATAAACAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCAGGATAAATCTTTCATATGTTGTGGTGTGCTGGTATAAACAAA  350

seq1  TGTGTCTTGCCCGTGGTATTAAATTACAACATATAAAGTTATGTGGAGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTGCCCGTGGTATTAAATTACAACATATAAAGTTATGTGGAGGA  400

seq1  TATAAAAGCTAATGATAATAAGTGCTTTTAAGTGCTTTGTTACTTTTCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGCTAATGATAATAAGTGCTTTTAAGTGCTTTGTTACTTTTCAT  450

seq1  GTTTACAATGCTTGCATTATTACTTATGTTTGTGCCTACTTAGTATTTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAATGCTTGCATTATTACTTATGTTTGTGCCTACTTAGTATTTAT  500

seq1  TTATTTATTTATTTACATCCCAAATGGTGCCCCCACTCATAGTCCCCCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTACATCCCAAATGGTGCCCCCACTCATAGTCCCCCCC  550

seq1  TTCACAGAGTTCCTCCTCCTCATTCGACTCTGAGAGGGCAGCGTTCCCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAGTTCCTCCTCCTCATTCGACTCTGAGAGGGCAGCGTTCCCAG  600

seq1  GGTATTTCCCAGAGCTACCAACCAAACATGACACAACAAGTTACAATAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTCCCAGAGCTACCAACCAAACATGACACAACAAGTTACAATAAG  650

seq1  GCTAGGAATAAACCCTTTCATAAAGGCTGGACAAGGAGGCAACCCAGGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAATAAACCCTTTCATAAAGGCTGGACAAGGAGGCAACCCAGGAG  700

seq1  TTAAGGACAGGACAACAACACAGTATGCAACATTCAGAATCAATAAAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGACAGGACAACAACACAGTATGCAACATTCAGAATCAATAAAAAT  750

seq1  CTGTTCTTAACTTCCCTGTACTGATGCATTAAAACACTGTTACAGTTAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTAACTTCCCTGTACTGATGCATTAAAACACTGTTACAGTTAGC  800

seq1  ACATAGTAAAAAGGATAGTGTATAGGTTTGTTTCCTAGGAGTAATTAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTAAAAAGGATAGTGTATAGGTTTGTTTCCTAGGAGTAATTAACT  850

seq1  GTGCCATATAGCCAAGACCTATAACAGTTCCACCATCTGAATTTGTGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATATAGCCAAGACCTATAACAGTTCCACCATCTGAATTTGTGTAT  900

seq1  ATGCATTGTGATGTTCTTGAATGATGGACTTGCTCTCACCCATTTATTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTGTGATGTTCTTGAATGATGGACTTGCTCTCACCCATTTATTGT  950

seq1  GGCATAGTCCCACCACACACAACTGTTTACATCGTTGAGAATGCTGACTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGTCCCACCACACACAACTGTTTACATCGTTGAGAATGCTGACTG  1000

seq1  TGTCATGAACACAAGATGGAATTC  1023
      ||||||||||||||||||||||||
seq2  TGTCATGAACACAAGATGGAATTC  1024

seq1: chr2_82210662_82211333
seq2: B6Ng01-170J04.g_67_734

seq1  GAATTCTTGCCTAATACTGAAAAACAAATTTAAAACAATCAGGGAGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCTAATACTGAAAAACAAATTTAAAACAATCAGGGAGGCTT  50

seq1  ACACCCTTCAGAAAAATTGATTATGCCTGTGTAATTAAATTAATATGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTTCAGAAAAATTGATTATGCCTGTGTAATTAAATTAATATGACC  100

seq1  CTCTTGTCTCTCTTAAGCTTTTGCCCCTCTTACTCTCACCTCTTGCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTCTCTCTTAAGCTTTTGCCCCTCTTACTCTCACCTCTTGCCCTC  150

seq1  TCTCTCCCCCTCCTTCCCGCCACCCCCTCCATGTGGCCATGGCCACTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCCCTCCTTCCCGCCACCCCCTCCATGTGGCCATGGCCACTCTC  200

seq1  TGCTTCTTTACTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTTACTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  250

seq1  TCTCTCTCTCTCTCTCTCTCCCCACTCTCTGCTTTTTTACAATAAAGCTC  300
      |||||||||||| ||| |  | ||| | |  |   ||||||| | | |||
seq2  TCTCTCTCTCTCACTCAC-ACACACACAC-ACACATTTACAACACATCTC  298

seq1  TAAAACCATGAAAAAATAAAA-----TAAAAAGGCATGAATATAAGAGAG  345
      |||||| || |||||||||||     |  | ||| || ||   ||||   
seq2  TAAAACGATAAAAAAATAAAAACTTTTTGAGAGGGAT-AAACCAAGA---  344

seq1  GAATTGGTAGGTAATACATAGGATAATCTCGGGACAAATAAAATAGGGTA  395
       |||||| | | ||||    |||||||| ||||||    |  ||||||||
seq2  -AATTGGAATGAAATATGGGGGATAATCGCGGGACTCTCACTATAGGGTA  393

seq1  GGGGTGAGA-ATAACTTTACTATAGACATATTTGACATTGGGGGAGAACA  444
      ||||||| | |||  | || |||||| |||  ||  |  || |  ||| |
seq2  GGGGTGATATATATATATA-TATAGATATAAATGGAACGGGAGAGGAAAA  442

seq1  GAATTAACTAATTATAAACAAAAGGTCAATGTCTTTAAAACAGAAAGAAT  494
       | |||   ||||||||||||| |||| |||||| |  || ||||| |||
seq2  CACTTACTCAATTATAAACAAACGGTCTATGTCTGTGTAAAAGAAAAAAT  492

seq1  GTGTATTTTCCAGGGATTCACTCCCATTTGAGCTTTCCAATGTCAGTTGG  544
      || | | ||||| |||| | | | ||||||| |||| || ||| ||||||
seq2  GTTTTTCTTCCAAGGATGCGCGCGCATTTGAACTTTTCATTGTGAGTTGG  542

seq1  TTAGCCCATGACGCATGTAGAAATAAGCAAAGTCAAATGGACTAAGTTGG  594
       |||||| |||| ||||||||||||  || |||  | ||  |||| ||||
seq2  ATAGCCCCTGACACATGTAGAAATACACAGAGT-GAGTGTGCTAATTTGG  591

seq1  TTATACACACACACACACACACACACACACACACACACACACACACACAC  644
      ||||| |||||||||| | ||| | |  ||| | | | || ||    |  
seq2  TTATATACACACACACCCCCACTCTCGGACAGATATATAC-CAAGAGCGA  640

seq1  AGACATACACAGCATATGCACACATACA  672
      | ||| ||||||||||||||||||||||
seq2  AAACACACACAGCATATGCACACATACA  668