BAC Information

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BAC

Clone NameB6Ng01-172C12
Chromosome2 (Build37)
Map Location 46,561,979 - 46,659,138
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041337, LOC666604, LOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172C12.bB6Ng01-172C12.g
ACCGA000848GA000849
length1,1371,174
definitionB6Ng01-172C12.b B6Ng01-172C12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,658,002 - 46,659,138)(46,561,979 - 46,563,174)
sequence
gaattctaatgactgctaccttttcccatggattgcctgtagttgcagtt
cctctagtactggtcacacgctttcttgccatattaattatacatagcta
tatggttttttttaatgtaaaaacaaactttatgtttcaaataccttttt
taaaaattctgtttttccaacagttatggcctctttaaagaataaagaag
acaatatttaaaactttgggctcttttgcaatatggcaatttacagtatg
tagccaagtgttgcggcagaaataaagcagtggaataacaaatcacaaga
caccctcaggacagaaggtagagagaaatgttaaattaatgagcctataa
aactgctgcaaatgaaacgtgtaaatacattgatcttttttttttaacct
aatggtttccttatgatttttacatcacagaaaaacctgttctatttgca
ccagcacagcttcttagtaaacactgttctttcttatctgctcgatgcct
tctccctaggcaatggcagatttttcatttagctaaaagctcggtaagag
gtctatgagaatgataatcctaccatggccgcagctggcattttcatggg
gtagatgattagtagaacgttttctattcgacctggagaaattctctcag
tgggacgttaacatccgcttactgtcttcaccagcacatgctcatcactt
ccccatctgacacccaagagcagaagagcagcttgaataatggataggat
aggagggtatctagctttttaaaaatagtatccatggtgagttacaagcc
aatatattggctttatctcgtttttaactgcttgcccttatgctatcaaa
ttatttagacaactaaagggtttgtactcccctaggaaaaggaaagtttc
attagtacatcttcagaattgctgttttactgacacttcccttttggggt
tgggttgaaatggctcctgtaggaaactgaaattgggatcaagctacctg
cttgtgagaaaatactctcccccagaacaaaggttccctttctaggtagc
tcaaccaggcaggctctgaaatagtagtattatatgtcttgcacatagag
gatccagaatgtattatgccagaatttatagctagag

gaattctaagaagaaacagtgtctgtccttttccttaagggaaaggccat
tagaaagaacatttaactgtatgtttttgccacaggatatgacagaaaaa
gagggaaaagtgcgacaattttatctgagatgtttacactcttctgtcaa
tgttgtaggagattattttcatcttaatctatacaatgcttaattttcaa
atcctgttaaaaagaatatctcttcttaattagtttaggagttatggtag
attatccactgaaagattaatggcatgctttctagtgaagtattgtaaac
cataagtttaaagttggaccagatgcattttagccctgaaaactcattag
ccatctgacccatttgcacatatggcaacaaagtgaagaatgtatgcagt
caaacacacacaaacacttcatcatcacaagccagcttcgtcttaaggca
cgccagtaatatttctacttgcaatagctacaaataccacaggaggagag
gtttcaaacagtgaacatgtaaattcatactgattggcagaaatgacgat
ggtggtctcttgtctaccactcttataaagttaagcatccatttctctaa
atctcaggtttaaactaacctttaggctaaaagcacaaaaatctcatctt
aagagtggacatttttttttctgcttttgattattttatatgcaaactgt
ttttgtggccccaacgtcttgtcgctagttatttttaaaagattgttctt
ttcaagagaaagatctcagagtctaagcatattttatactccccctttca
attgtcacaggtatcaagtgttgtcactatcaaaattagcaatgtgtgca
atgattcccccaagaagaagatgtccactaaccttaagaactggattgga
tgctttggttcagatgggagcagtaagccactgtgtgtatccaactggta
tatggttgagtgtgtctgcatgtggaacatgtattacctgttacatgatg
acacttgatattcctcaacagaagacctgcttggtaggcacaggaattca
tctcgtatccaataaaatgacatgaaatgaaagaaggatggaaatgcaaa
gatagtaaggacgtaagcagtcatacgtgtagtacgcaacgtatgtcact
gtttttgggagcagcttaatcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_46658002_46659138
seq2: B6Ng01-172C12.b_34_1170 (reverse)

seq1  CTCTAGCTATAAAATCCTGCATAATACTTTCCTGGAT-CTCTATGTTGCA  49
      ||||||||||||| ||  ||||||||| || |||||| ||||||||   |
seq2  CTCTAGCTATAAATTCTGGCATAATACATT-CTGGATCCTCTATGTGCAA  49

seq1  GACATATAAATATTAACTATTTCAGAGCTGGCCTGGTTGAGCTACTTAGG  99
      ||||||| |||| | |||||||||||||  ||||||||||||||| || |
seq2  GACATAT-AATACT-ACTATTTCAGAGCCTGCCTGGTTGAGCTACCTA-G  96

seq1  AAAGGGAACCTTTG-TCTGGGGGAGAGTATTTTCTCACAAGCAGGTAGCT  148
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGGGAACCTTTGTTCTGGGGGAGAGTATTTTCTCACAAGCAGGTAGCT  146

seq1  TGATCCC-ATTTCAGTTTTCCTACAGGAGCCATTTCAA-CCAACCCCAAA  196
      ||||||| ||||||| |||||||||||||||||||||| |||||||||||
seq2  TGATCCCAATTTCAG-TTTCCTACAGGAGCCATTTCAACCCAACCCCAAA  195

seq1  AGGGAAGTGTCAGTAAAACAGCAATTCTGAAGATGTACTAATGAAACTTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTGTCAGTAAAACAGCAATTCTGAAGATGTACTAATGAAACTTT  245

seq1  CCTTTTCCTAGGGGAGTACAAA-CCTTTAGTTGTCTAAATAATTTGATAG  295
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTTTTCCTAGGGGAGTACAAACCCTTTAGTTGTCTAAATAATTTGATAG  295

seq1  CATAAGGGCAAGCAGTTAAAAACGAGATAAAGCCAATATATTGGCTTGTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGGCAAGCAGTTAAAAACGAGATAAAGCCAATATATTGGCTTGTA  345

seq1  ACTCACCATGGATACTATTTTTAAAAAGCTAGATACCCTCCTATCCTATC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCATGGATACTATTTTTAAAAAGCTAGATACCCTCCTATCCTATC  395

seq1  CATTATTCAAGCTGCTCTTCTGCTCTTGGGTGTCAGATGGGGAAGTGATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCAAGCTGCTCTTCTGCTCTTGGGTGTCAGATGGGGAAGTGATG  445

seq1  AGCATGTGCTGGTGAAGACAGTAAGCGGATGTTAACGTCCCACTGAGAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTGCTGGTGAAGACAGTAAGCGGATGTTAACGTCCCACTGAGAGA  495

seq1  ATTTCTCCAGGTCGAATAGAAAACGTTCTACTAATCATCTACCCCATGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCAGGTCGAATAGAAAACGTTCTACTAATCATCTACCCCATGAA  545

seq1  AATGCCAGCTGCGGCCATGGTAGGATTATCATTCTCATAGACCTCTTACC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGCTGCGGCCATGGTAGGATTATCATTCTCATAGACCTCTTACC  595

seq1  GAGCTTTTAGCTAAATGAAAAATCTGCCATTGCCTAGGGAGAAGGCATCG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTTAGCTAAATGAAAAATCTGCCATTGCCTAGGGAGAAGGCATCG  645

seq1  AGCAGATAAGAAAGAACAGTGTTTACTAAGAAGCTGTGCTGGTGCAAATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATAAGAAAGAACAGTGTTTACTAAGAAGCTGTGCTGGTGCAAATA  695

seq1  GAACAGGTTTTTCTGTGATGTAAAAATCATAAGGAAACCATTAGGTTAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGTTTTTCTGTGATGTAAAAATCATAAGGAAACCATTAGGTTAAA  745

seq1  AAAAAAAGATCAATGTATTTACACGTTTCATTTGCAGCAGTTTTATAGGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGATCAATGTATTTACACGTTTCATTTGCAGCAGTTTTATAGGC  795

seq1  TCATTAATTTAACATTTCTCTCTACCTTCTGTCCTGAGGGTGTCTTGTGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAATTTAACATTTCTCTCTACCTTCTGTCCTGAGGGTGTCTTGTGA  845

seq1  TTTGTTATTCCACTGCTTTATTTCTGCCGCAACACTTGGCTACATACTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTCCACTGCTTTATTTCTGCCGCAACACTTGGCTACATACTGT  895

seq1  AAATTGCCATATTGCAAAAGAGCCCAAAGTTTTAAATATTGTCTTCTTTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCCATATTGCAAAAGAGCCCAAAGTTTTAAATATTGTCTTCTTTA  945

seq1  TTCTTTAAAGAGGCCATAACTGTTGGAAAAACAGAATTTTTAAAAAAGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAAGAGGCCATAACTGTTGGAAAAACAGAATTTTTAAAAAAGGT  995

seq1  ATTTGAAACATAAAGTTTGTTTTTACATTAAAAAAAACCATATAGCTATG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAACATAAAGTTTGTTTTTACATTAAAAAAAACCATATAGCTATG  1045

seq1  TATAATTAATATGGCAAGAAAGCGTGTGACCAGTACTAGAGGAACTGCAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTAATATGGCAAGAAAGCGTGTGACCAGTACTAGAGGAACTGCAA  1095

seq1  CTACAGGCAATCCATGGGAAAAGGTAGCAGTCATTAGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGCAATCCATGGGAAAAGGTAGCAGTCATTAGAATTC  1137


seq1: chr2_46561979_46563174
seq2: B6Ng01-172C12.g_63_1236

seq1  GAATTCTAAGAAGAAACAGTGTCTGTCCTTTTCCTTAAGGGAAAGGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGAAGAAACAGTGTCTGTCCTTTTCCTTAAGGGAAAGGCCAT  50

seq1  TAGAAAGAACATTTAACTGTATGTTTTTGCCACAGGATATGACAGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGAACATTTAACTGTATGTTTTTGCCACAGGATATGACAGAAAAA  100

seq1  GAGGGAAAAGTGCGACAATTTTATCTGAGATGTTTACACTCTTCTGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAAAGTGCGACAATTTTATCTGAGATGTTTACACTCTTCTGTCAA  150

seq1  TGTTGTAGGAGATTATTTTCATCTTAATCTATACAATGCTTAATTTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAGGAGATTATTTTCATCTTAATCTATACAATGCTTAATTTTCAA  200

seq1  ATCCTGTTAAAAAGAATATCTCTTCTTAATTAGTTTAGGAGTTATGGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTTAAAAAGAATATCTCTTCTTAATTAGTTTAGGAGTTATGGTAG  250

seq1  ATTATCCACTGAAAGATTAATGGCATGCTTTCTAGTGAAGTATTGTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCACTGAAAGATTAATGGCATGCTTTCTAGTGAAGTATTGTAAAC  300

seq1  CATAAGTTTAAAGTTGGACCAGATGCATTTTAGCCCTGAAAACTCATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTTTAAAGTTGGACCAGATGCATTTTAGCCCTGAAAACTCATTAG  350

seq1  CCATCTGACCCATTTGCACATATGGCAACAAAGTGAAGAATGTATGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGACCCATTTGCACATATGGCAACAAAGTGAAGAATGTATGCAGT  400

seq1  CAAACACACACAAACACTTCATCATCACAAGCCAGCTTCGTCTTAAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACACAAACACTTCATCATCACAAGCCAGCTTCGTCTTAAGGCA  450

seq1  CGCCAGTAATATTTCTACTTGCAATAGCTACAAATACCACAGGAGGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGTAATATTTCTACTTGCAATAGCTACAAATACCACAGGAGGAGAG  500

seq1  GTTTCAAACAGTGAACATGTAAATTCATACTGATTGGCAGAAATGACGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAACAGTGAACATGTAAATTCATACTGATTGGCAGAAATGACGAT  550

seq1  GGTGGTCTCTTGTCTACCACTCTTATAAAGTTAAGCATCCATTTCTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCTCTTGTCTACCACTCTTATAAAGTTAAGCATCCATTTCTCTAA  600

seq1  ATCTCAGGTTTAAACTAACCTTTAGGCTAAAAGCACAAAAATCTCATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGTTTAAACTAACCTTTAGGCTAAAAGCACAAAAATCTCATCTT  650

seq1  AAGAGTGGACATTTTTTTTTCTGCTTTTGATTATTTTATATGCAAACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGGACATTTTTTTTTCTGCTTTTGATTATTTTATATGCAAACTGT  700

seq1  TTTTGTGGCCCCAACGTCTTGTCGCTAGTTATTTTTAAAAGATTGTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGCCCCAACGTCTTGTCGCTAGTTATTTTTAAAAGATTGTTCTT  750

seq1  TTCAAGAGAAAGATCTCAGAGTCTAAGCATATTTTATACTCCCCCTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAGAAAGATCTCAGAGTCTAAGCATATTTTATACTCCCCCTTTCA  800

seq1  ATTGTCACAGGTATCAAAGTGTTGTCACTATCAAAATTAGCAATGTGTGC  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTGTCACAGGTATC-AAGTGTTGTCACTATCAAAATTAGCAATGTGTGC  849

seq1  AATGATTCCCCCAAGAAGAAGATGTCCACTAACCTTAAAGAACTGGATTG  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATGATTCCCCCAAGAAGAAGATGTCCACTAACCTT-AAGAACTGGATTG  898

seq1  GATGCTTTGGTTCAGATGGGAGCAGTAAGCCACTGTGTGTATCCAACTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTGGTTCAGATGGGAGCAGTAAGCCACTGTGTGTATCCAACTGG  948

seq1  TATATGGTTGAGTGTGTCTGCAATGTGGAACATGTTATTACCTG-TACAT  999
      ||||||||||||||||||||| |||||||||||| ||||||||| |||||
seq2  TATATGGTTGAGTGTGTCTGC-ATGTGGAACATG-TATTACCTGTTACAT  996

seq1  GATGACACTTGATATTCTCAAACAGAGAACCTGCTTGGTAGGCACAAGAA  1049
      |||||||||||||||||   ||||||  |||||||||||||||||| |||
seq2  GATGACACTTGATATTCCTCAACAGAAGACCTGCTTGGTAGGCACAGGAA  1046

seq1  ATCATCTTCAGTATCACAAAAAAAAAAAAGAAAAAGAAAAAGAAAAGAAA  1099
       ||||||   |||||                  || |||| || | ||||
seq2  TTCATCT--CGTATC-----------------CAATAAAATGACATGAAA  1077

seq1  AGAAAGAGAAAAGAAAAAGAAAAG---GAAAGAAAGAAAGAAGAAAAAAA  1146
       ||||||   | | ||| | ||||   | ||| | | ||| ||   | | 
seq2  TGAAAGAAGGATGGAAATGCAAAGATAGTAAGGACGTAAGCAG-TCATAC  1126

seq1  GAGAAGAAAAGAAAAAGTAATGTCACTGTTTTT-GGAGCAGTCTAATCCT  1195
      | | ||   |   || || |||||||||||||| |||||||  |||||||
seq2  GTGTAG--TACGCAACGT-ATGTCACTGTTTTTGGGAGCAGCTTAATCCT  1173

seq1  T  1196
      |
seq2  T  1174


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