BAC Information

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BAC

Clone NameB6Ng01-172N14
Chromosome2 (Build37)8 (Build37)
Map Location 45,057,206 - 45,058,26098,509,980 - 98,510,061
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneArhgap15, Gtdc1, Zeb2
Downstream geneLOC100042661, LOC100041337, LOC666604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172N14.bB6Ng01-172N14.g
ACCGA001357GA001358
length1,065337
definitionB6Ng01-172N14.b B6Ng01-172N14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,057,206 - 45,058,260)(98,509,980 - 98,510,061)
sequence
gaattcaaggacagctagggctatacagagaaactctttctggaaaacaa
caacaacactcctaacaaacaaacaaacaaacaaacaaaccccaggccaa
agagcaaaacaaaacaaattcaacaatagacaaaacaaaacaaaaactga
aagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaa
ggaagaaggaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagaggaaagaaagaaaacataaaggtaacaggttagc
caagatgctcctgccacactctcagcaggtcagaaagtgattaaaaagat
aatgccaagcttgaacaccaggacatagtaaaatttaaatacagagtgga
gcgttgactcgaagagtgacattggtattactggtttttgagtgtattca
catggtttgtattttatatttgtctttttttttttttttttttttggtga
aagtatttcattcattgaaatttggaaattaagtgaagaagcacacccaa
tttaggaagggcattctgacctacccagattagacttgatgattttctga
gatgacaagaagaaaagcttcgttgaatcagtctaaaagaaacatgtgtc
ctggagctagaaagctggagctgaagggaaattgaggttttctttctctc
tttttcctctttttttttcagttttctttatttcctgtgtgtgacatagt
aaaggatttgtacactgtttctgttgttttgttttatttattcatatctg
accaatttactcagcatttccaaatagctacttgacatatgtgtatgtgt
gtcgggtcattttgaatctctgctgattacagggattgcctttatctact
atcaatatcatatttatactgaactaagcctgtctttccattttatggtg
gcaatgattcaccatggtccattgtcttctaccttgagaataactgccag
aagaccttttcactttgactgcctttctctggcctggaagggagaccata
tagggaatgaagtta

atctctgtctctatattatttcatggcttttttgtttggctcttttttcc
tgtttgattatttgtttgtttcataatattctggtttggttgagtttatt
ttattatcatttttatttttagatacctgtttgttttctcatgagagtgg
gacagagagtgtgtgtatttggataggtggggaattgcaagactctgggt
ggaatttgggaggaggaaatattaatcagaatatggtgtttagaagatat
tttaaaaattaagatagaaggaagagagaaagaaagaaagaaagaaagag
agagagagagaaggaaggaaggaaggaaggaatgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45057206_45058260
seq2: B6Ng01-172N14.b_47_1111

seq1  GAATTCAAGGACAGCTAGGGCTATACAGAGAAACTCTTTCTGGAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGACAGCTAGGGCTATACAGAGAAACTCTTTCTGGAAAACAA  50

seq1  CAACAACACTCCTAACAAACAAACAAACAAACAAACAAACCCCAGGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACACTCCTAACAAACAAACAAACAAACAAACAAACCCCAGGCCAA  100

seq1  AGAGCAAAACAAAACAAATTCAACAATAGACAAAACAAAACAAAAACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAACAAAACAAATTCAACAATAGACAAAACAAAACAAAAACTGA  150

seq1  AAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  200

seq1  GGAAGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  250

seq1  AAGAAAGAAAGAAAGAGGAAAGAAAGAAAACATAAAGGTAACAGGTTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAGGAAAGAAAGAAAACATAAAGGTAACAGGTTAGC  300

seq1  CAAGATGCTCCTGCCACACTCTCAGCAGGTCAGAAAGTGATTAAAAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGCTCCTGCCACACTCTCAGCAGGTCAGAAAGTGATTAAAAAGAT  350

seq1  AATGCCAAGCTTGAACACCAGGACATAGTAAAATTTAAATACAGAGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAAGCTTGAACACCAGGACATAGTAAAATTTAAATACAGAGTGGA  400

seq1  GCGTTGACTCGAAGAGTGACATTGGTATTACTGGTTTTTGAGTGTATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGACTCGAAGAGTGACATTGGTATTACTGGTTTTTGAGTGTATTCA  450

seq1  CATGGTTTGTATTTTATATTTGTCTTTTTTTTTTTTTTTTTTTTTGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTGTATTTTATATTTGTCTTTTTTTTTTTTTTTTTTTTTGGTGA  500

seq1  AAGTATTTCATTCATTGAAATTTGGAAATTAAGTGAAGAAGCACACCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTCATTCATTGAAATTTGGAAATTAAGTGAAGAAGCACACCCAA  550

seq1  TTTAGGAAGGGCATTCTGACCTACCCAGATTAGACTTGATGATTTTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAAGGGCATTCTGACCTACCCAGATTAGACTTGATGATTTTCTGA  600

seq1  GATGACAAGAAGAAAAGCTTCGTTGAATCAGTCTAAAAGAAACATGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAAGAAGAAAAGCTTCGTTGAATCAGTCTAAAAGAAACATGTGTC  650

seq1  CTGGAGCTAGAAAGCTGGAGCTGAAGGGAAATTGAGGTTTTCTTTCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCTAGAAAGCTGGAGCTGAAGGGAAATTGAGGTTTTCTTTCTCTC  700

seq1  TTTTTCCTCTTTTTTTTTCAGTTTTCTTTATTTCCTGTGTGTGACATAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCTTTTTTTTTCAGTTTTCTTTATTTCCTGTGTGTGACATAGT  750

seq1  AAAGGATTTGTACACTGTTTCTGTTG-TTTGTTTTATTTATTCATATCTG  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAGGATTTGTACACTGTTTCTGTTGTTTTGTTTTATTTATTCATATCTG  800

seq1  ACCAATTTACTCAGCATTTCCAAATAGCTAC-TGACATATGTGTATGTGT  848
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACCAATTTACTCAGCATTTCCAAATAGCTACTTGACATATGTGTATGTGT  850

seq1  GTC-GGTCATTTTGAATCTCTGCTGATTACA-GGATTGCCTTTATCTACT  896
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTCGGGTCATTTTGAATCTCTGCTGATTACAGGGATTGCCTTTATCTACT  900

seq1  ATCAATATCATATTTATACTGAACTAAGCTTGTCTTTCCA-TTTAT-GTG  944
      ||||||||||||||||||||||||||||| |||||||||| ||||| |||
seq2  ATCAATATCATATTTATACTGAACTAAGCCTGTCTTTCCATTTTATGGTG  950

seq1  GCAATGATTCACCATGGCCCA-TGTCTTCTACTCTGAG-ATAACTG-CAG  991
      ||||||||||||||||| ||| ||||||||||  |||| ||||||| |||
seq2  GCAATGATTCACCATGGTCCATTGTCTTCTACCTTGAGAATAACTGCCAG  1000

seq1  AAGACC-TTTCACTTTGACTGCC-TTCTCTGGCCTGGAAGGGAAGACCAT  1039
      |||||| |||||||||||||||| |||||||||||||||||| |||||||
seq2  AAGACCTTTTCACTTTGACTGCCTTTCTCTGGCCTGGAAGGG-AGACCAT  1049

seq1  ATGGGGATAGAAGTTA  1055
      || ||||  |||||||
seq2  ATAGGGAATGAAGTTA  1065


seq1: chr8_98509980_98510061
seq2: B6Ng01-172N14.g_342_406 (reverse)

seq1  CTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTGTTTCTTTCTCTCTCTCT  50
      |||| ||||||||||||||||||||             ||||||||||||
seq2  CTTCATTCCTTCCTTCCTTCCTTCC-------------TTCTCTCTCTCT  37

seq1  CTCTCTCTTTCTTTCTTTCTTTCTCTCTCTCT  82
      |||| |||||||||||||||||||||||    
seq2  CTCTTTCTTTCTTTCTTTCTTTCTCTCT----  65


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