BAC Information

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BAC

Clone NameB6Ng01-173C08
Chromosome2 (Build37)
Map Location 181,562,848 - 181,717,109
singlet/doubletdoublet
Overlap genePcmtd2, Polr3k, EG432881
Upstream geneYthdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1
Downstream geneLOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173C08.bB6Ng01-173C08.g
ACCGA001575GA001576
length1,1041,172
definitionB6Ng01-173C08.b B6Ng01-173C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,562,848 - 181,563,950)(181,716,540 - 181,717,109)
sequence
gaattcagatattctggtacaaggcagaactgagcactgagttaggggtg
aggaagagagagctctctgatgacctcacagctattagatctggctatgt
ctgtaggcagtctactcttggacttcccatatgtaaggcaatggattcct
tttatttgtcttaaacgctcatgtactttggctttttttttcctttcctt
tcagaggtacctttctactgttacactttcatgacaggtggatttcttgt
tttcccaagttcagattttcatcacattcaacttgacttctctaggaatg
ttgccgggaagcagatgtggagttcttcttatatatagacagaagccatt
ttacctgagaaattcttaagagactctggactttgtttccagtttctgtt
ctacacagacaaaaccataaggactagggtcatacatgagagagccatgt
agattttgaggaagagtaccctggagatttcctttaacaaggttacacca
tagatagtagttagtagtctggggttacaactcttaacattggcatagtt
gctatgacaagagccagggtatgggcaagcagagggtctctgttacaaac
tgagctcatcctaggtcctaagaaccggatatgtgatggtccttgatgga
gaaaaagaggagagggtgtttccagggccccaatatagctgcctacagag
gtaagtctaggactgtagaagaatgagatgcaatggtggagaggcccaca
tctgctctcaggtgagagcagcagccttatgtttggttcattagccctat
tctgtcactgcccattgtcttcttccttttggtttcgaagggtctagcct
gtcatataccctttaaatactacatgtcaggggaactgcccattccagtc
tccaacctagggcctcttcataatcatacagagcatgaataaatggccca
ggaaacacaaagagcttaatttatcagaggacttcccaaaagctacatac
aaaaatcaccaaagtttgtgaaagtgttttgtgaagagcagaggtcattc
tgtagtgaggtttgtttgctctgatgactcatctctcttgcttctggtcc
tctg
gaattcaagaacgtaaacataatggaatactgaagggagtaaataattgc
ttttaattttaaaaatggggtacaaaaataaacagagcattctaaacagg
aagcttgaatgaccgataagcacttaaggaaatggtcaaagtccgtagtc
atcagggaaattcaaataaaaaagacactgtggttccatcttacaatcat
cagatttgctaatataagaaagtcaagagatagcacatgctggggaagat
gcagagcaaggtgagaattctatcattgctggaacttgtacaaccaattt
ggaaatttatttggcagtttctcagaaagctgaaaatagagaaaccctca
agacccagctatactgctgctcagcatataaccaaaagatgtcccaccat
accacaagaacattatgttcatagcagacttattcataataattagaagc
tggaaataacctagaggtcactcaaccaaagaatgaataaaggaactgtg
gttcatttacacaatggaatactattcagctattaaaaacagggacttca
tgaaattttcaggcaaatggaagggagtagaaaatattgtagccacctgt
ggccacgtgaactgggttccttgaaaggcgggctggggttgaaagagatc
agacatcgagaaaagaacgaggctaagacaaacctttctgttcaaagcct
ctgaagtgtactgagagtccgtgcttataaagagggtaggcccatccccc
gccaaccgattcttggtgcctggagccagcctgtaggcgatctacagggt
gtgtcttcggaagtctcaaggacctttcagcaggaagcagagtcttggag
aagagcaaatagagccatcaaggtcagaaggcagcaaggtcaaagtctgg
atcagcctgcttcaaggctggagggaggctacaaatatcatcccatgtga
ggtaaagcaaaacacaaaaggccatgcatgatatatacacaatttcctca
atgcaaatatgtttgcataaggaatgttccatttttaaagctgtatagtc
catagaatttatgcatgtactcctcattgtggtaagccttctcatttccc
gactacatattccaaggctaggtggcatgagaattatgatatttccacac
catcctctaccttaatatgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_181562848_181563950
seq2: B6Ng01-173C08.b_46_1149

seq1  GAATTCAGATATTCTGGTACAAGGCAGAACTGAGCACTGAGTTAGGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATATTCTGGTACAAGGCAGAACTGAGCACTGAGTTAGGGGTG  50

seq1  AGGAAGAGAGAGCTCTCTGATGACCTCACAGCTATTAGATCTGGCTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGAGAGCTCTCTGATGACCTCACAGCTATTAGATCTGGCTATGT  100

seq1  CTGTAGGCAGTCTACTCTTGGACTTCCCATATGTAAGGCAATGGATTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGCAGTCTACTCTTGGACTTCCCATATGTAAGGCAATGGATTCCT  150

seq1  TTTATTTGTCTTAAACGCTCATGTACTTTGGCTTTTTTTTTCCTTTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTCTTAAACGCTCATGTACTTTGGCTTTTTTTTTCCTTTCCTT  200

seq1  TCAGAGGTACCTTTCTACTGTTACACTTTCATGACAGGTGGATTTCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTACCTTTCTACTGTTACACTTTCATGACAGGTGGATTTCTTGT  250

seq1  TTTCCCAAGTTCAGATTTTCATCACATTCAACTTGACTTCTCTAGGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAGTTCAGATTTTCATCACATTCAACTTGACTTCTCTAGGAATG  300

seq1  TTGCCGGGAAGCAGATGTGGAGTTCTTCTTATATATAGACAGAAGCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGGGAAGCAGATGTGGAGTTCTTCTTATATATAGACAGAAGCCATT  350

seq1  TTACCTGAGAAATTCTTAAGAGACTCTGGACTTTGTTTCCAGTTTCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGAGAAATTCTTAAGAGACTCTGGACTTTGTTTCCAGTTTCTGTT  400

seq1  CTACACAGACAAAACCATAAGGACTAGGGTCATACATGAGAGAGCCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGACAAAACCATAAGGACTAGGGTCATACATGAGAGAGCCATGT  450

seq1  AGATTTTGAGGAAGAGTACCCTGGAGATTTCCTTTAACAAGGTTACACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGAGGAAGAGTACCCTGGAGATTTCCTTTAACAAGGTTACACCA  500

seq1  TAGATAGTAGTTAGTAGTCTGGGGTTACAACTCTTAACATTGGCATAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGTAGTTAGTAGTCTGGGGTTACAACTCTTAACATTGGCATAGTT  550

seq1  GCTATGACAAGAGCCAGGGTATGGGCAAGCAGAGGGTCTCTGTTACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGACAAGAGCCAGGGTATGGGCAAGCAGAGGGTCTCTGTTACAAAC  600

seq1  TGAGCTCATCCTAGGTCCTAAGAACCGGATATGTGATGGTCCTTGATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCATCCTAGGTCCTAAGAACCGGATATGTGATGGTCCTTGATGGA  650

seq1  GAAAAAGAGGAGAGGGTGTTTCCAGGGCCCCAATATAGCTGCCTACAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAGGAGAGGGTGTTTCCAGGGCCCCAATATAGCTGCCTACAGAG  700

seq1  GTAAGTCTAGGACTGTAGAAGAATGAGATGCAATGGTGGAGAGGCCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCTAGGACTGTAGAAGAATGAGATGCAATGGTGGAGAGGCCCACA  750

seq1  TCTGCTCTCAGGTGAGAGCAGCAGCCTTATGTTTGGTTCATTAGCCCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTCAGGTGAGAGCAGCAGCCTTATGTTTGGTTCATTAGCCCTAT  800

seq1  TCTGTCACTGCCCATTGTCTTCTTCCTTTTGGTTTCGAAGGGTCTAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACTGCCCATTGTCTTCTTCCTTTTGGTTTCGAAGGGTCTAGCCT  850

seq1  GTCATATACCCTTTAAATACTACATGTCAGGGGAACTGCCCATTCCAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATACCCTTTAAATACTACATGTCAGGGGAACTGCCCATTCCAGTC  900

seq1  TCCAACCTAGGGCCTCTTCATAATCATACAGAGCATGAATAAATGGCCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCTAGGGCCTCTTCATAATCATACAGAGCATGAATAAATGGCCCA  950

seq1  GGAAACACAAAGAGCTTAATTTATCAGAGGACTTCCAAAAAGCTACAATA  1000
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  GGAAACACAAAGAGCTTAATTTATCAGAGGACTTCCCAAAAGCTAC-ATA  999

seq1  CAAAAAATCACCAAAGTTTGTGAAAGTG-TTTGTGAAGAGCAGGAGGTCA  1049
      | |||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  C-AAAAATCACCAAAGTTTGTGAAAGTGTTTTGTGAAGAGCA-GAGGTCA  1047

seq1  -TCTGTAGTGAGGTTTGTTTGCTCTGATGACTCATCTCTC-TGCTTCTGG  1097
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCTGTAGTGAGGTTTGTTTGCTCTGATGACTCATCTCTCTTGCTTCTGG  1097

seq1  T-CTCTG  1103
      | |||||
seq2  TCCTCTG  1104

seq1: chr2_181716540_181717109
seq2: B6Ng01-173C08.g_675_1244 (reverse)

seq1  CCACATAATTAAGGTTAGAGAGATGG-GTGTGAATATCCATAATCTCCAT  49
      |||||| ||||||| ||||| ||||| |||  ||||| ||||||   |||
seq2  CCACAT-ATTAAGG-TAGAG-GATGGTGTGGAAATAT-CATAATTCTCAT  46

seq1  GCCACCTAG-CTTGGAATATGTAGTTGGGAAAATGAGA--GCTTACCACA  96
      ||||||||| ||||||||||||||| ||| ||||||||  ||||||||||
seq2  GCCACCTAGCCTTGGAATATGTAGTCGGG-AAATGAGAAGGCTTACCACA  95

seq1  ATGAGGAGTACATGCATAAA-TCTATGGACTATACAGCTTTAATAATGGA  145
      |||||||||||||||||||| |||||||||||||||||||||| ||||| 
seq2  ATGAGGAGTACATGCATAAATTCTATGGACTATACAGCTTTAAAAATGG-  144

seq1  AACATTCCTTTATGCAAACAATATTTGCA-TGAGG-AATTGTGTATATAT  193
      |||||||| |||||||||| ||||||||| ||||| ||||||||||||||
seq2  AACATTCC-TTATGCAAAC-ATATTTGCATTGAGGAAATTGTGTATATAT  192

seq1  CATGCATGCCCTTTTGTG-TTTGCTTTACCTCACATGGGATGATATTTTG  242
      |||||||| ||||||||| |||||||||||||||||||||||||| ||||
seq2  CATGCATGGCCTTTTGTGTTTTGCTTTACCTCACATGGGATGATA-TTTG  241

seq1  TAGCCTCCCT-CAGCCTTGAAGCAGGCTGATCCAGACTTTGACCTTGCTG  291
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCCCTCCAGCCTTGAAGCAGGCTGATCCAGACTTTGACCTTGCTG  291

seq1  CCTTCTGACCTTGATGGCTCTATTTGCTCTTCTCCAAGACTCTGCTTCCT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGACCTTGATGGCTCTATTTGCTCTTCTCCAAGACTCTGCTTCCT  341

seq1  GCTGAAAGGTCCTTGAGACTTCCGAAGACACACCCTGTAGATCGCCTACA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAGGTCCTTGAGACTTCCGAAGACACACCCTGTAGATCGCCTACA  391

seq1  GGCTGGCTCCAGGCACCAAGAATCGGTTGGCGGGGGATGGGCCTACCCTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTCCAGGCACCAAGAATCGGTTGGCGGGGGATGGGCCTACCCTC  441

seq1  TTTATAAGCACGGACTCTCAGTACACTTCAGAGGCTTTGAACAGAAAGGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGCACGGACTCTCAGTACACTTCAGAGGCTTTGAACAGAAAGGT  491

seq1  TTGTCTTAGCCTCGTTCTTTTCTCGATGTCTGATCTCTTTCAACCCCAGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTAGCCTCGTTCTTTTCTCGATGTCTGATCTCTTTCAACCCCAGC  541

seq1  CCGCCTTTCAAGGAACCCAGTTCACGTGG  570
      |||||||||||||||||||||||||||||
seq2  CCGCCTTTCAAGGAACCCAGTTCACGTGG  570