BAC Information

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BAC

Clone NameB6Ng01-173C20
Chromosome2 (Build37)
Map Location 81,720,811 - 81,880,422
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040624, LOC100040655, LOC100040704
Downstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173C20.bB6Ng01-173C20.g
ACCGA001595GA001596
length1,2201,102
definitionB6Ng01-173C20.b B6Ng01-173C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,879,232 - 81,880,422)(81,720,811 - 81,721,630)
sequence
gaattctcttgtcatttctagcaggatgctgtcctgaaatctctatgttg
ttgacttatgcaagtcattagactcacagaattacatataatatctattt
aagtagagaacttgtcatatggacttcacttataacaatatttcaattaa
tttataaaacatcatcatggattcttctattttggggttgtacaggaaca
acgatgttcttttttatttctaaaatttgcaacaagtgtataataaacac
gtgtgaaagcaaatttagtttgtaggccaatggcaggcctcactgacact
tgtcaaaggcagcaacattcttttcttttaattttctttgaaaagtatat
tttttattgaaatagaagcattcttggaacacctacaggttttcttttga
catgtcaaaatatagtaaaaaggaactagatgaaaataaaattatatttt
ggatattaataggcttatttggtgttaccacttttggatcattctattta
cttgagagctatacccaacaggggaaaaaaagtcaatttaatggtttatt
taagtagaccaagtataaagtaaatcaccaactttattattaaaagatca
ataaaagcacataattagaattacgaataattgaaaacatggacctaata
caaacttaataaactctcaaggtttattacaaatacaggctgtgggactt
cataaatcacatctaactgtctggtaataaatgaaaacatagttgtgtat
ttttcaagtttcctgtgagtactcactttgtcattataacctgtctcctt
cccatttttccctcaaaatactcacatacatccttcccctttctcctttg
tatttatggcctcttttacaataattgttattagacatatgtttatatac
atatatattaacaaatttagcctagtcagtcgtgtactgttacttgtatg
gctttttttaagtgctaaacaaccattagaccactgttgggtatttctct
tcctggagaaagaacctctttggtcccactcccagctttcaaacagttgc
cttttaatttcttttatgtaaaccttaagtcaaacagaggagaacaccaa
atgaaattcttgccaaagtggatgaagaacatgccttatgaggcctttca
acacttacacaaaagaaacttacagaaaaccgagttttaattagtaacaa
actgttctgtacctaaggaa

gaattctagaggaatatataagacgtgcacttcatgatataaacttagat
gattgcttcatgagtagctcagacaataatgccaagaatcaataagtaag
gttacattaaagtttaaatttgctgcacagaaaaagtaaaacaaatgtgt
atgaagagctaccaaacagaatggagaaactctgccatctggtcatctgg
cacaagattataatctagaatacatacagagagtaaaaggtaagtaccca
taagtacgctaaccacttattaaatgggaaaattaaacaaacactttaca
aaaagaggaaattgaaatgaaaagtaactacaagaaaaatattcaagatc
tttacccagccaggaaatgtaagtccaaaccagactaagatttttgcctt
accctatcttatagttaaggaaaacaaacaaacaaacagaaagacagaca
aatagacaaatagttacacattatagtaagcacaggcaaaatgaagaaac
tttatctttgctgctaaagatgaaagtaatccaggcactttgacagatca
tatgtgtgctcctcaaaaaattaaagttatgatgacattatgaaaaaaac
taatacccccttactttaaagataccttacctgcatagtcgtgtctaata
tatgactgctcactgatgacatagcatgcttcagtgcccagtgatgaatg
gttagataaaggaaaggtgctatgtgtgcatgataactttactctgcctt
aaagaagagtgaaattctaccattgttccttagtttaatggctgtgtaat
tcaaatgctattgaaagctaatttagtaagacaaccttgcttatgttttt
atctcactagagtgttataggatattcccaatttcagtctttttcagcaa
tatacattaatgggtatttttaataagtctattacctaataaacaaaaat
ggtttcctttagtaatcattaacttttccttttcaaacatcttcattttt
tatagatcccttataccacatttacatctattccattgaaacagctcatt
agtatataaacatactcacatgaataacttagctaattttatatttgcag
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_81879232_81880422
seq2: B6Ng01-173C20.b_43_1262 (reverse)

seq1  TTCCTTAG--TCAGAACAAGTTTGTTACT-ATTAAAA-TCTGTTTTCTGT  46
      ||||||||   |||||| ||||||||||| ||||||| || |||||||||
seq2  TTCCTTAGGTACAGAAC-AGTTTGTTACTAATTAAAACTCGGTTTTCTGT  49

seq1  -AGTT--CTTTGTGT-AGTGTTGAA--GCCTCAT-AGGCATG-TCCTCAT  88
       ||||   ||||||| |||||||||  ||||||| ||||||| || ||||
seq2  AAGTTTCTTTTGTGTAAGTGTTGAAAGGCCTCATAAGGCATGTTCTTCAT  99

seq1  CCACTTTGGC-AGA--TTCATTT-GTG-TCTCCTCTGTTTGAC-TAAGG-  131
      |||||||||| |||  ||||||| ||| ||||||||||||||| ||||| 
seq2  CCACTTTGGCAAGAATTTCATTTGGTGTTCTCCTCTGTTTGACTTAAGGT  149

seq1  TTACAT-AAAGAA--TTAAAGGCAACTG-TTGAAAGCTGGGAGTGGGAC-  176
      |||||| ||||||  | ||||||||||| |||||||||||||||||||| 
seq2  TTACATAAAAGAAATTAAAAGGCAACTGTTTGAAAGCTGGGAGTGGGACC  199

seq1  -AAGAGGT--CTTCTCCAGGGAAGAG-AATA-CCAACAGTGGTCTAATGG  221
       |||||||   ||||||| ||||||| |||| ||||||||||||||||||
seq2  AAAGAGGTTCTTTCTCCA-GGAAGAGAAATACCCAACAGTGGTCTAATGG  248

seq1  TTG-TTAGCACTT-AAAACAGCCATACAAGTAACAGTACACGACTGACTA  269
      ||| ||||||||| |||| |||||||||||||||||||||||||||||||
seq2  TTGTTTAGCACTTAAAAAAAGCCATACAAGTAACAGTACACGACTGACTA  298

seq1  GGCTATATTTGTTAATATATATGTATATAAACATATGTCTAATAACAATT  319
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAATTTGTTAATATATATGTATATAAACATATGTCTAATAACAATT  348

seq1  ATTGTAAAAGAGGCCATAAATACAAAGGAGAAAGGGGAAGGATGTATGTG  369
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAAAGAGGCCATAAATACAAAGGAGAAAGGGGAAGGATGTATGTG  398

seq1  AGTATTTTGAGGGAAAAATGGGAAGGAGACAGGTTATAATGACAAAGTGA  419
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTGAGGGAAAAATGGGAAGGAGACAGGTTATAATGACAAAGTGA  448

seq1  GTACTCACAGGAAACTTGAAAAATACACAACTATGTTTTCATTTATTACC  469
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCACAGGAAACTTGAAAAATACACAACTATGTTTTCATTTATTACC  498

seq1  AGACAGTTAGATGTGATTTATGAAGTCCCACAGCCTGTATTTGTAATAAA  519
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTTAGATGTGATTTATGAAGTCCCACAGCCTGTATTTGTAATAAA  548

seq1  CCTTGAGAGTTTATTAAGTTTGTATTAGGTCCATGTTTTCAATTATTCGT  569
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGAGTTTATTAAGTTTGTATTAGGTCCATGTTTTCAATTATTCGT  598

seq1  AATTCTAATTATGTGCTTTTATTGATCTTTTAATAATAAAGTTGGTGATT  619
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAATTATGTGCTTTTATTGATCTTTTAATAATAAAGTTGGTGATT  648

seq1  TACTTTATACTTGGTCTACTTAAATAAACCATTAAATTGACTTTTTTTCC  669
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATACTTGGTCTACTTAAATAAACCATTAAATTGACTTTTTTTCC  698

seq1  CCTGTTGGGTATAGCTCTCAAGTAAATAGAATGATCCAAAAGTGGTAACA  719
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGGGTATAGCTCTCAAGTAAATAGAATGATCCAAAAGTGGTAACA  748

seq1  CCAAATAAGCCTATTAATATCCAAAATATAATTTTATTTTCATCTAGTTC  769
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAAGCCTATTAATATCCAAAATATAATTTTATTTTCATCTAGTTC  798

seq1  CTTTTTACTATATTTTGACATGTCAAAAGAAAACCTGTAGGTGTTCCAAG  819
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTACTATATTTTGACATGTCAAAAGAAAACCTGTAGGTGTTCCAAG  848

seq1  AATGCTTCTATTTCAATAAAAAATATACTTTTCAAAGAAAATTAAAAGAA  869
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTCTATTTCAATAAAAAATATACTTTTCAAAGAAAATTAAAAGAA  898

seq1  AAGAATGTTGCTGCCTTTGACAAGTGTCAGTGAGGCCTGCCATTGGCCTA  919
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTTGCTGCCTTTGACAAGTGTCAGTGAGGCCTGCCATTGGCCTA  948

seq1  CAAACTAAATTTGCTTTCACACGTGTTTATTATACACTTGTTGCAAATTT  969
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAAATTTGCTTTCACACGTGTTTATTATACACTTGTTGCAAATTT  998

seq1  TAGAAATAAAAAAGAACATCGTTGTTCCTGTACAACCCCAAAATAGAAGA  1019
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAAAAAAGAACATCGTTGTTCCTGTACAACCCCAAAATAGAAGA  1048

seq1  ATCCATGATGATGTTTTATAAATTAATTGAAATATTGTTATAAGTGAAGT  1069
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGATGATGTTTTATAAATTAATTGAAATATTGTTATAAGTGAAGT  1098

seq1  CCATATGACAAGTTCTCTACTTAAATAGATATTATATGTAATTCTGTGAG  1119
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGACAAGTTCTCTACTTAAATAGATATTATATGTAATTCTGTGAG  1148

seq1  TCTAATGACTTGCATAAGTCAACAACATAGAGATTTCAGGACAGCATCCT  1169
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGACTTGCATAAGTCAACAACATAGAGATTTCAGGACAGCATCCT  1198

seq1  GCTAGAAATGACAAGAGAATTC  1191
      ||||||||||||||||||||||
seq2  GCTAGAAATGACAAGAGAATTC  1220


seq1: chr2_81720811_81721630
seq2: B6Ng01-173C20.g_345_1170

seq1  GGAAAATTAAACAAACACTTTACAAAAAGAGGAAATTGAAATGAAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTAAACAAACACTTTACAAAAAGAGGAAATTGAAATGAAAAGTA  50

seq1  ACTACAAGAAAAATATTCAAGATCTTTACCCAGCCAGGAAATGTAAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAGAAAAATATTCAAGATCTTTACCCAGCCAGGAAATGTAAGTCC  100

seq1  AAACCAGACTAAGATTTTTGCCTTACCCTATCTTATAGTTAAGGAAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGACTAAGATTTTTGCCTTACCCTATCTTATAGTTAAGGAAAACA  150

seq1  AACAAACAAACAGAAAGACAGACAAATAGACAAATAGTTACACATTATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAGAAAGACAGACAAATAGACAAATAGTTACACATTATAG  200

seq1  TAAGCACAGGCAAAATGAAGAAACTTTATCTTTGCTGCTAAAGATGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACAGGCAAAATGAAGAAACTTTATCTTTGCTGCTAAAGATGAAAG  250

seq1  TAATCCAGGCACTTTGACAGATCATATGTGTGCTCCTCAAAAAATTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAGGCACTTTGACAGATCATATGTGTGCTCCTCAAAAAATTAAAG  300

seq1  TTATGATGACATTATGAAAAAAACTAATACCCCCTTACTTTAAAGATACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATGACATTATGAAAAAAACTAATACCCCCTTACTTTAAAGATACC  350

seq1  TTACCTGCATAGTCGTGTCTAATATATGACTGCTCACTGATGACATAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGCATAGTCGTGTCTAATATATGACTGCTCACTGATGACATAGCA  400

seq1  TGCTTCAGTGCCCAGTGATGAATGGTTAGATAAAGGAAAGGTGCTATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAGTGCCCAGTGATGAATGGTTAGATAAAGGAAAGGTGCTATGTG  450

seq1  TGCATGATAACTTTACTCTGCCTTAAAGAAGAGTGAAATTCTACCATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGATAACTTTACTCTGCCTTAAAGAAGAGTGAAATTCTACCATTGT  500

seq1  TCCTTAGTTTAATGGCTGTGTAATTCAAATGCTATTGAAAGCTAATTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGTTTAATGGCTGTGTAATTCAAATGCTATTGAAAGCTAATTTAG  550

seq1  TAAGACAACCTTGCTTATGTTTTTATCTCACTAGAGTGTTATAGGATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAACCTTGCTTATGTTTTTATCTCACTAGAGTGTTATAGGATATT  600

seq1  CCC-ATTTCAGTC-TTTTCAGCAATATACATTAAT-GGTATTTTTAATAA  647
      ||| ||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  CCCAATTTCAGTCTTTTTCAGCAATATACATTAATGGGTATTTTTAATAA  650

seq1  GTCTATTTACCTAATAAACAAAAATGGTT--CCTTAGTAATCATTAAACT  695
      ||||| |||||||||||||||||||||||  | ||||||||||||||  |
seq2  GTCTA-TTACCTAATAAACAAAAATGGTTTCCTTTAGTAATCATTAACTT  699

seq1  TTCCTTTTCAAACATCTTCA-TTTTTATAGATCCCTTAATACACATTTAC  744
      |||||||||||||||||||| |||||||||||||||||   |||||||||
seq2  TTCCTTTTCAAACATCTTCATTTTTTATAGATCCCTTATACCACATTTAC  749

seq1  ATCTATTCAATTTGAAACAGCTCATTAGTATAT-AACATACTCACATG-A  792
      |||||||| | |||||||||||||||||||||| |||||||||||||| |
seq2  ATCTATTCCA-TTGAAACAGCTCATTAGTATATAAACATACTCACATGAA  798

seq1  TTACTTAGCTAAATTTTATA-TTGCAGAA  820
      | |||||||| ||||||||| ||||||||
seq2  TAACTTAGCT-AATTTTATATTTGCAGAA  826


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