BAC Information

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BAC

Clone NameB6Ng01-174P07
Chromosome2 (Build37)
Map Location 178,753,503 - 178,957,068
singlet/doubletdoublet
Overlap geneLOC665264, LOC100043168
Upstream geneLOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26, LOC100039368
Downstream geneLOC100039413, Cdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174P07.bB6Ng01-174P07.g
ACCGA002891GA002892
length958398
definitionB6Ng01-174P07.b B6Ng01-174P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,753,503 - 178,754,449)(178,956,664 - 178,957,068)
sequence
gaattcaatagcagctggttttccggcagagatactgcatcggtgtgtaa
gattattaccatctagcgtttatcgagcactcacccagaaaaggacgagg
cactagacaccgtgtgagagatatttaaaagacaggcagctatggcaacc
tgcagacaagaattatcgatagaaagaaacaactcggctttctttgggag
atacttaattgcatctggacatatttacatattttctttgtgacactctt
agttaaaaagaaaacaagaaaaggcatatgaaagaataacaagctagaag
aagaaaagaataaaaacattacttttcagttcagggagaaacacaggaag
gcagggttctccattccctcatctggtttcagaaactgccatgtttgtgg
acttccacggtaaaaacctggttttaatgtcagctgcccactgacaccct
ccacctggacttcacaaaggaagagctcaggacctgggagcctccctcct
acagctcccacaatcctcttctgatgatcactggcctcatcagcctcacc
ttgaagggcatctttgacatttctggtctccacccacatcctgtgaatca
gcttgcacatgtgggatgccatgtcagcctctccacacacctgtcccacg
ttccatggccctctgactcagccttcctctccattgctgctgggagctct
gctcagcacttgctgggtgcaaggctgagccatcacccctgacatcatgc
caccatgacacacctcagagaatatgtttctcagcaccttcaagggccaa
tgccaatagttcctaaacaaggcatttgcccatcccctgacatactatcc
accttttctccccctggtgggggtgccaggtcccagataactaaaatcct
ttgggttccctccctgtctttggacttcatgtctggggtatcttttactt
agggattt
caagtagaagctggttggttgtttgtgtgctagttttgcttgccatcccc
ccagaacttccggacagtcctgaagaggtgtgctctagcaacacatggca
tgtgggtgcccggtgatggaaaatctgcatggtgtagtggacaagtgtct
tccaaatgggtcacagagttaccccagttcatgacaggccagtaggcttc
catttaacacagtgcagagggctcagcaaaacagcttcaaaccatactaa
tctaacctgcaagaagcccccacccctgggtttggagtgcagtctggaaa
gaacagtcacagggatgaagaagagccccaaatcaattaaaacccagctc
ctttcccacctggatgtctgagtgaggttttaattatgtgtatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_178753503_178754449
seq2: B6Ng01-174P07.b_38_994

seq1  GAATTCAATAGCAGCTGGTTTTCCGGCAGAGATACTGCAGCGGTGTGTAA  50
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAATTCAATAGCAGCTGGTTTTCCGGCAGAGATACTGCATCGGTGTGTAA  50

seq1  GATTATTACCATCTAGCGTTTATCGAGCACTCACCCAGAGAAGGACGAGG  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATTATTACCATCTAGCGTTTATCGAGCACTCACCCAGAAAAGGACGAGG  100

seq1  CACTAGACACCGTGTGAGAGATATTTAAAAGACAGGCAGCTATGGCAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGACACCGTGTGAGAGATATTTAAAAGACAGGCAGCTATGGCAACC  150

seq1  TGCAGACAAGAATTATCGATAGAAAGAAACAACTCGGCTTTCTTTGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACAAGAATTATCGATAGAAAGAAACAACTCGGCTTTCTTTGGGAG  200

seq1  ATACTTAATTGCATCTGGACATATTTACATATTTTCTTTGTGACACTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAATTGCATCTGGACATATTTACATATTTTCTTTGTGACACTCTT  250

seq1  AGTTAAAAAGAAAACAAGAAAAGGCATATGAAAGAATAACAAGCTAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAAGAAAACAAGAAAAGGCATATGAAAGAATAACAAGCTAGAAG  300

seq1  AAGAAAAGAATAAAAACATTACTTTTCAGTTCAGGGAGAAACACAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAATAAAAACATTACTTTTCAGTTCAGGGAGAAACACAGGAAG  350

seq1  GCAGGGTTCTCCATTCCCTCATCTGGTTTCAGAAACTGCCATGTTTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTTCTCCATTCCCTCATCTGGTTTCAGAAACTGCCATGTTTGTGG  400

seq1  ACTTCCACGGTAAAAACCTGGTTTTAATGTCAGCTGCCCACTGACACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACGGTAAAAACCTGGTTTTAATGTCAGCTGCCCACTGACACCCT  450

seq1  CCACCTGGACTTCACAAAGGAAGAGCTCAGGACCTGGGAGCCTCCCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGGACTTCACAAAGGAAGAGCTCAGGACCTGGGAGCCTCCCTCCT  500

seq1  ACAGCTCCCACAATCCTCTTCTGATGATCACTGGCCTCATCAGCCTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCCCACAATCCTCTTCTGATGATCACTGGCCTCATCAGCCTCACC  550

seq1  TTGAAGGGCATCTTTGACATTTCTGGTCTCCACCCACATCCTGTGAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGGCATCTTTGACATTTCTGGTCTCCACCCACATCCTGTGAATCA  600

seq1  GCTTGCACATGTGGGATGCCATGTCAGCCTCTCCACACACCTGTCCCACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCACATGTGGGATGCCATGTCAGCCTCTCCACACACCTGTCCCACG  650

seq1  TTCCATGGCCCTCTGACTCAGCCTTCCTCTCCATTGCTGCTGGGAGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGGCCCTCTGACTCAGCCTTCCTCTCCATTGCTGCTGGGAGCTCT  700

seq1  GCTCAGCACTTGCTGGGTGCAAGGCTGAGCCATCACCCCTGACATCATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCACTTGCTGGGTGCAAGGCTGAGCCATCACCCCTGACATCATGC  750

seq1  CACCATGACACACCTCAGAGAATATGTTTCTCAGCACC-TCAA-GGCCAA  798
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  CACCATGACACACCTCAGAGAATATGTTTCTCAGCACCTTCAAGGGCCAA  800

seq1  TGCCAATAG-TCCTAAACAAGGCA-TTGCCCATCCCCTGACATACTATCC  846
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  TGCCAATAGTTCCTAAACAAGGCATTTGCCCATCCCCTGACATACTATCC  850

seq1  ACC-TTTCTCCCCTTG--TGGGGTG-CAGGTCCCAGAT-ACTAGAAATTC  891
      ||| ||||||||| ||   |||||| |||||||||||| |||  ||| ||
seq2  ACCTTTTCTCCCCCTGGTGGGGGTGCCAGGTCCCAGATAACT--AAAATC  898

seq1  TTTTGGGTTCCCT-CCTGTCTTTTGACTTCATGTCT-GTGTATC-TTTAC  938
       |||||||||||| ||||||||| |||||||||||| | ||||| |||||
seq2  CTTTGGGTTCCCTCCCTGTCTTTGGACTTCATGTCTGGGGTATCTTTTAC  948

seq1  TTAAGGATT  947
      ||| |||||
seq2  TTAGGGATT  957

seq1: chr2_178956664_178957068
seq2: B6Ng01-174P07.g_70_473 (reverse)

seq1  CACACATACACATAATTAAAACCTCACTCAGACATCCAGGTGGGAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACACATAATTAAAACCTCACTCAGACATCCAGGTGGGAAAGGA  50

seq1  GCTGGGTTTTAATTGATTTGGGGCTCTTCTTCATCCCTGTGACTGTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTTTTAATTGATTTGGGGCTCTTCTTCATCCCTGTGACTGTTCTT  100

seq1  TCCAGACTGCACTCCAAACCCAGGGGTGGGGGCTTCTTGCAGGTTAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACTGCACTCCAAACCCAGGGGTGGGGGCTTCTTGCAGGTTAGATT  150

seq1  AGTATGGTTTGAAGCTGTTTTGCTGAGCCCTCTGCACTGTGTTAAATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGTTTGAAGCTGTTTTGCTGAGCCCTCTGCACTGTGTTAAATGGA  200

seq1  AGCCTACTGGCCTGTCATGAACTGGGGTAACTCTGTGACCCATTTGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACTGGCCTGTCATGAACTGGGGTAACTCTGTGACCCATTTGGAAG  250

seq1  ACACTTGTCCACTACACCATGCAGATTTTCCATCACCGGGCACCCACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGTCCACTACACCATGCAGATTTTCCATCACCGGGCACCCACATG  300

seq1  CCATGTGTTGCTAGAGCACACCTCTTCAGGACTGTCTGGAAGTTCTGGGG  350
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCATGTGTTGCTAGAGCACACCTCTTCAGGACTGTCCGGAAGTTCTGGGG  350

seq1  GGATGGCAAGCAAAACTAGCACACAAACAACTTTTCCAGCTTCTACTTGG  400
      |||||||||||||||||||||||||||||||    |||||||||||||||
seq2  GGATGGCAAGCAAAACTAGCACACAAACAAC-CAACCAGCTTCTACTTGG  399

seq1  AATTC  405
      |||||
seq2  AATTC  404