BAC Information

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BAC

Clone NameB6Ng01-175N18
Chromosome2 (Build37)
Map Location 36,079,930 - 36,080,892
singlet/doubletsinglet
Overlap genenone
Upstream geneGsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493
Downstream genePtgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175N18.bB6Ng01-175N18.g
ACCGA003552GA003553
length9671,225
definitionB6Ng01-175N18.b B6Ng01-175N18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgccctctaagtttctaagctatggtgcgcaagtttgccaagg
atgaggtgccctgtgtctgggcatggctgcttcttacatgaggtcacagg
gtacagaggagacatcgaattctgctacctgctggcagctgaattggact
tttctctgggtgctcctggctgtgcctcatggtggtcctggtttttttga
acctcttcctttggctggaaagtgtgtctcacttcagaactgcagcatct
gattgtgtctttgttctctagaggagtcagcccacaccagaaacactctt
ttttggcttctgacagacatctgataagcagctgtccagacttcttgtcc
tttgcttgcctattacaaaactccatttcccaagctcctttgcaatccag
ggagagcatgtgacacactctggtagaagagaagtcgtgggagtctgtgg
gagtatccgttctcttcccagcctttccacacttggagcaaggtgcctgg
ggtacaacacacagatatagccagcagaaggattgagtgaagagcccctc
ctcatgttatgactataaaggactggaatctctaccttagcacttcctgg
catttgaggaagaaaattccccatcctctcttttgattaaatctcccatg
tatggtttcttttttctgtcatgtgcaagtaaatgcaatcacgacacagg
aagccagtatatgcctgccatcattctccctcaagttttcttgagatagc
cataatctaggaccacagtgactgaattgaattcattgtagagttattac
ttataattatgacacccagtactggtcatttcccaaatgcctcctggggg
ctagaattgggctaagtgatcccctcaccatggctttttattgtcttcct
ttgcccatgaaggaaactgggctcaaagacatcaaatggaaccaaatcac
acaagcttcaactgtgc
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcagcatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaatttcaccagagaactcataaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaataag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcg
tgattctaactaaagaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcatttgcaaattcatctggaataacaaaaaacct
aggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcac
catgcctgacctaaagctttactacagagcaattgtggtaaaaactgcat
tggtactggtatagagacagaaaagtagaccaattggaatagaattgaag
acccagaaatgaacccacacacctattgctccacttgatcttcgacaagg
gagcttaaaaccatcccagtggaagaaagacagcatttttcaacaatttg
gtgcctggcacaacctgggttgttattcatgtagaagaatgcagaattcc
gaatccaataacttatctccttgtactaagtctaaatcctaatgggattc
aaggacctcctcaataaaccaagagacacctccaactcttatagagggaa
gaaagtcggggaaaaagccctttgaagattggtctacgggggaaaaattc
ctgatccgaatcacgcactgccttgtgtgctcgttagaatatccgagtaa
actgataacaatgtggtgatacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_36079930_36080892
seq2: B6Ng01-175N18.b_49_1015

seq1  GAATTCTTGCCCTCTAAGTTTCTAAGCTATGGTGCGCAAGTTTGCCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCCTCTAAGTTTCTAAGCTATGGTGCGCAAGTTTGCCAAGG  50

seq1  ATGAGGTGCCCTGTGTCTGGGCATGGCTGCTTCTTACATGAGGTCACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTGCCCTGTGTCTGGGCATGGCTGCTTCTTACATGAGGTCACAGG  100

seq1  GTACAGAGGAGACATCGAATTCTGCTACCTGCTGGCAGCTGAATTGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAGGAGACATCGAATTCTGCTACCTGCTGGCAGCTGAATTGGACT  150

seq1  TTTCTCTGGGTGCTCCTGGCTGTGCCTCATGGTGGTCCTGGTTTTTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGGGTGCTCCTGGCTGTGCCTCATGGTGGTCCTGGTTTTTTTGA  200

seq1  ACCTCTTCCTTTGGCTGGAAAGTGTGTCTCACTTCAGAACTGCAGCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTCCTTTGGCTGGAAAGTGTGTCTCACTTCAGAACTGCAGCATCT  250

seq1  GATTGTGTCTTTGTTCTCTAGAGGAGTCAGCCCACACCAGAAACACTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGTCTTTGTTCTCTAGAGGAGTCAGCCCACACCAGAAACACTCTT  300

seq1  TTTTGGCTTCTGACAGACATCTGATAAGCAGCTGTCCAGACTTCTTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCTTCTGACAGACATCTGATAAGCAGCTGTCCAGACTTCTTGTCC  350

seq1  TTTGCTTGCCTATTACAAAACTCCATTTCCCAAGCTCCTTTGCAATCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGCCTATTACAAAACTCCATTTCCCAAGCTCCTTTGCAATCCAG  400

seq1  GGAGAGCATGTGACACACTCTGGTAGAAGAGAAGTCGTGGGAGTCTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCATGTGACACACTCTGGTAGAAGAGAAGTCGTGGGAGTCTGTGG  450

seq1  GAGTATCCGTTCTCTTCCCAGCCTTTCCACACTTGGAGCAAGGTGCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATCCGTTCTCTTCCCAGCCTTTCCACACTTGGAGCAAGGTGCCTGG  500

seq1  GGTACAACACACAGATATAGCCAGCAGAAGGATTGAGTGAAGAGCCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAACACACAGATATAGCCAGCAGAAGGATTGAGTGAAGAGCCCCTC  550

seq1  CTCATGTTATGACTATAAAGGACTGGAATCTCTACCTTAGCACTTCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTATGACTATAAAGGACTGGAATCTCTACCTTAGCACTTCCTGG  600

seq1  CATTTGAGGAAGAAAATTCCCCATCCTCTCTTTTGATTAAATCTCCCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGGAAGAAAATTCCCCATCCTCTCTTTTGATTAAATCTCCCATG  650

seq1  TATGGTTTCTTTTTTCTGTCATGTGCAAGTAAATGCAATCACGACACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTCTTTTTTCTGTCATGTGCAAGTAAATGCAATCACGACACAGG  700

seq1  AAGCCAGTATATGCCTGCCATCATTCTCCCTCAAGTTTTCTTGAGATAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTATATGCCTGCCATCATTCTCCCTCAAGTTTTCTTGAGATAGC  750

seq1  CATAATCTAGGACCACAGTGACTGAATTGAATTCATTGTAGAGTTATTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCTAGGACCACAGTGACTGAATTGAATTCATTGTAGAGTTATTAC  800

seq1  TTATAATTATGACACCAAGTACTGGTCATTTCCCAAATGCCTCCTGGGGG  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTATAATTATGACACCCAGTACTGGTCATTTCCCAAATGCCTCCTGGGGG  850

seq1  CTAGAATTGGGCTAAGTGATCCCCTCACCATGG-TTTTTATTGTCTTCC-  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  CTAGAATTGGGCTAAGTGATCCCCTCACCATGGCTTTTTATTGTCTTCCT  900

seq1  TTGCCCAATGAGGAAACTGGGCTCAAAGACATCAAATGGACCAAAATCAC  948
      |||||||   |||||||||||||||||||||||||||||| | |||||||
seq2  TTGCCCATGAAGGAAACTGGGCTCAAAGACATCAAATGGAACCAAATCAC  950

seq1  AC-AGC-TCAACTGTGC  963
      || ||| ||||||||||
seq2  ACAAGCTTCAACTGTGC  967