BAC Information

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BAC

Clone NameB6Ng01-176B05
Chromosome18 (Build37)2 (Build37)
Map Location 3,010,523 - 3,012,343145,830,696 - 145,831,245
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi, LOC100039273, LOC435549, EG664867
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176B05.bB6Ng01-176B05.g
ACCGA003711GA003712
length1,0241,034
definitionB6Ng01-176B05.b B6Ng01-176B05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,010,523 - 3,012,343)(145,830,696 - 145,831,245)
sequence
gaattcaaccacaggactccactatatccctcttagaaagagtagctgga
gcttctctttaaggcttgttggtctaggggaatgattctcacttagggtc
tgacaggtcctgggttcaaatcttagaagagacctcttcttttgcaaatc
caaccctgagaattaaagtcgaccatggctgattagaaggtatgacttaa
caaatgaaaacagaattccggaagtacttaaggtggtttgtttgtttgtt
tgttggttggtttctttggaccttgttttctggttgatgcagggtcttgc
tcttttagctcaggctggtcctgacaaagtcaaggatagctgcatttctg
atcttcatgccttcacttcttgtgtgctggaaataaatgcatgtttatta
atctggtgttccggttggaacccagggttaggcaagcaattaggtgagct
acaccatcagctcataactcaaaatgtccatcaagaatggatggcattat
tcaaactaacctgatggataaaaattaaggaaaatgttggaatttaaaaa
aaaacaaaatcaatccagctgccctggcaaagcagggagaactggagcag
gcgtctgagatgcaccagcttctagtcagctttatagtgtgcttgagata
cgctgagctacatgagaagaaacacagttagacaagtaagggttgtggga
caatcttcaagacatctggcttgctaaaaaatactggtttgaagtttgcc
agtatcccttaagtgcaaatctggatccagaccaccggcctttgttcatt
atagattccttgggtccaacccagcaagaccccaaaagtagtaaagagcc
tgtgacatcctcagatttgcaggactagcattgttcagtcccctggggca
cagacccaagaaaggcgagctgcacctgaaactggctaggatcctagctt
ttgcaaatttgcgttggaacttccctttgttttccccgctctccctaaaa
atgcaaggattttcaaatttaaga

gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggcttttttttggctgggagactattaataactgcttctatttc
tttaggggatatgggactgtttagaaggtcaacttgatcctgattcaact
ttggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcc
agttttgttgagtatagccttttgtagaaggatctgatggtgttttggat
ttcttcaggatctgttgttatgtctcccttttcatttctgattttgttaa
ttaggattttgtccctgtgccctttagtgagtctagctaagggtttatct
atcttgttgattttctcaaagaaccaactcctcgtttggttaattctttg
aatagttcttcttgtttccacttggttgatttcaccccctgagtttgatt
atttcctgccgtctactcctcctgggtgaatttgcttcctttttttctag
agcttttagatgtgttgtcaagctgcttatatgtgctctcttccgttttt
tcttgaggcacttcatagctaatgagtttccctctagaaatgctttcatg
gtgtcccaaagtttggtacattgttggctcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_3010523_3012343
seq2: B6Ng01-176B05.b_47_1070 (reverse)

seq1  TCTTAAATTTGAAAATCCTTTGCATTTTTATGGTGAGCATGGAAA--AAA  48
      |||||||||||||||||| ||||||||||| || ||||  |||||  |||
seq2  TCTTAAATTTGAAAATCC-TTGCATTTTTAGGGAGAGCGGGGAAAACAAA  49

seq1  GGGAAGCTCCAATGCAGATTCGC-AAAGCCAAGATCCTAGCCAGTTTCAG  97
      |||||| ||||| ||| ||| || ||||| | ||||||||||||||||||
seq2  GGGAAGTTCCAACGCAAATTTGCAAAAGCTAGGATCCTAGCCAGTTTCAG  99

seq1  GTGCAGCTCCCCTTTCTTGGGTCTGTGCCTGAGGGGATCTGAAAAATTCT  147
      ||||||||| |||||||||||||||||||  |||||| ||||| ||| ||
seq2  GTGCAGCTCGCCTTTCTTGGGTCTGTGCCCCAGGGGA-CTGAACAATGCT  148

seq1  ATTCCAGCAAATCTGAGGAGGTCACAGGCTCTTGACTACTTTTGGGGTCT  197
      | ||| ||||||||||||| ||||||||||||| ||||||||||||||||
seq2  AGTCCTGCAAATCTGAGGATGTCACAGGCTCTTTACTACTTTTGGGGTCT  198

seq1  TGTTGGGTTGGACCCAAGCAAACTATAATGATTAAAGGCCGGTGATCTGG  247
      || ||||||||||||||| || |||||||||  ||||||||||| |||||
seq2  TGCTGGGTTGGACCCAAGGAATCTATAATGAACAAAGGCCGGTGGTCTGG  248

seq1  AACCAGATTTGCACTTAAGGGCTACTGGCAAACTTCAAACCAGTATTTAT  297
      | ||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  ATCCAGATTTGCACTTAAGGGATACTGGCAAACTTCAAACCAGTATTTTT  298

seq1  TAGCAAGCCAGATGTCTTGCAGATTG-CCCACAACCCTATCTTCTGTAAT  346
      ||||||||||||||||||| |||||| |||||||||||  ||| | ||| 
seq2  TAGCAAGCCAGATGTCTTGAAGATTGTCCCACAACCCTTACTTGTCTAAC  348

seq1  TGTGTTTCTTCTCATGTAGCTCAGAGTATCTCAAACACACTATAAAGCTG  396
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  TGTGTTTCTTCTCATGTAGCTCAGCGTATCTCAAGCACACTATAAAGCTG  398

seq1  ACTAGAAGCTGGTGCATCTCAGACACCTGCTCCAGTTCTCCCTGCTTTGC  446
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTAGAAGCTGGTGCATCTCAGACGCCTGCTCCAGTTCTCCCTGCTTTGC  448

seq1  CAGGGCAGCTGGATTGATTTTG---TTTTTTAAATTCCAACATTTTCCTT  493
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  CAGGGCAGCTGGATTGATTTTGTTTTTTTTTAAATTCCAACATTTTCCTT  498

seq1  TATTTTTATCCATCAGGTTAGTTTGAATAATGCCATCCATTCTTGATGGA  543
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATCCATCAGGTTAGTTTGAATAATGCCATCCATTCTTGATGGA  548

seq1  CATTTTGAGTTATGAGCTGATGCTGTAGCTCACCTAATTGCTTGCCTAAC  593
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATTTTGAGTTATGAGCTGATGGTGTAGCTCACCTAATTGCTTGCCTAAC  598

seq1  CCTGGGTTCCAACCTTAAC-------------ACATGCCTATATTTCCAG  630
      ||||||||||||||  |||             |||||| | |||||||||
seq2  CCTGGGTTCCAACCGGAACACCAGATTAATAAACATGCATTTATTTCCAG  648

seq1  CACACAAGAAGTGAAGGCATGAAAATCAGAAATGCAGCTATCCTTGACTT  680
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CACACAAGAAGTGAAGGCATGAAGATCAGAAATGCAGCTATCCTTGACTT  698

seq1  TGTCAGGACCAGCCTGAGTTAAAGGAGCAAGACACTGCCTCAACCAGAAA  730
      |||||||||||||||||| |||| ||||||||| |||| |||||||||||
seq2  TGTCAGGACCAGCCTGAGCTAAAAGAGCAAGACCCTGCATCAACCAGAAA  748

seq1  ACAAGGTCCAAAGAAACCAACCAACCAAGCAACAAACAAACAAAGAATCA  780
      |||||||||||||||||||||        |||||||||||||||      
seq2  ACAAGGTCCAAAGAAACCAAC--------CAACAAACAAACAAA------  784

seq1  CCTTGAGTACTGTATTAGTTAGGGTTCTCTAGAGTCACAGAACTTATGGA  830
                                                        
seq2  --------------------------------------------------  784

seq1  TAGTCTCTATATAGTAAAAGAATTTATTGATGACTTACAGTCGACAGCCC  880
                                                        
seq2  --------------------------------------------------  784

seq1  AATTCCCAACAATGGTTTAGTCGCAGCTGTGAATGGAAGTCCAAGGATCT  930
                                                        
seq2  --------------------------------------------------  784

seq1  AGCAGTTACTCAGTCTCACACAGCAAGCAGGCGAAGGAGCAAGAGCTAGA  980
                                                        
seq2  --------------------------------------------------  784

seq1  CTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAAGGTGTAGCCCA  1030
                                                        
seq2  --------------------------------------------------  784

seq1  GATTAAAGGTGTGTTCCTTAAACTCGGAGATTCAATCTTCTGGAATCCAT  1080
                                                        
seq2  --------------------------------------------------  784

seq1  AGCCACTATGGCTCAAGATCTCCATACCAAAATCTAGACAAGGATCTCCA  1130
                                                        
seq2  --------------------------------------------------  784

seq1  AGCCTCCAGATAAGGGTCACTGGTGAGCCTTCCAATTCTGGATTGTAATT  1180
                                                        
seq2  --------------------------------------------------  784

seq1  CATTCCAAATATAGTCAAGTTGACAACCAGGAATAGCCACTACTATCCAC  1230
                                                        
seq2  --------------------------------------------------  784

seq1  CACCCCTTGTCAACTTGACACAAATAATATCATGTTCACATGAAACAATA  1280
                                                        
seq2  --------------------------------------------------  784

seq1  ACAAGGTTGTGAATACACCTAACATGATATAACTATCCCTCATACAATCG  1330
                                                        
seq2  --------------------------------------------------  784

seq1  CAAACGTATTTGTAAATTTACAATGGGGCATTCATATTATTTTATAATCC  1380
      |||||                                             
seq2  CAAAC---------------------------------------------  789

seq1  TCGTTTCTGCAACTGGTTACGTGGCCTTAATTGGTATTTATAACTACCTT  1430
                                                        
seq2  --------------------------------------------------  789

seq1  CCTCTACTACCCATTCTGTATTTCCTTCACCTTCAGCCAGCACCTCAGCA  1480
                                 ||||||                 
seq2  ---------------------------CACCTT-----------------  795

seq1  GGTCTTGGCTCTTTTCCTGGAGGATTGACCCATACCTTCATTCCTGATGG  1530
                                                        
seq2  --------------------------------------------------  795

seq1  GTCATTCTGGATTGTAGTTCATTCCAAATATAGTCAAGTTGACAACCAGG  1580
                                                        
seq2  --------------------------------------------------  795

seq1  AATAGCCACTACAAGTACTTACAGATTTCTGTTTTCTTTTGCTAAGCCAT  1630
                  |||||||| | || |||||||||| |||| |||| |||
seq2  ------------AAGTACTTCCGGAATTCTGTTTTCATTTGTTAAGTCAT  833

seq1  ACCTTCTAAGCAGCCAAGGTCGACTTTAATTCTCAGGGTTGGATTGGCAA  1680
      ||||||||| |||||| |||||||||||||||||||||||||||| ||||
seq2  ACCTTCTAATCAGCCATGGTCGACTTTAATTCTCAGGGTTGGATTTGCAA  883

seq1  AAGCAGAGGTCTCTTCCAAGATTTGAACCCAGGACCTGTCAGACTCTAAG  1730
      ||| |||||||||||| ||||||||||||||||||||||||||| |||||
seq2  AAGAAGAGGTCTCTTCTAAGATTTGAACCCAGGACCTGTCAGACCCTAAG  933

seq1  CGAGAATCATTCCCCTAGACCAGGAAGCCTTAAAGAGAAGCTCCAGCTAC  1780
       |||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  TGAGAATCATTCCCCTAGACCAACAAGCCTTAAAGAGAAGCTCCAGCTAC  983

seq1  TCTTTCTAAGAGGGATATAGTGGAGTTCTCTGGTTGAATTC  1821
      |||||||||||||||||||||||||| || |||||||||||
seq2  TCTTTCTAAGAGGGATATAGTGGAGTCCTGTGGTTGAATTC  1024


seq1: chr2_145830696_145831245
seq2: B6Ng01-176B05.g_547_1095 (reverse)

seq1  AAATGAAGCCACAATGTACCCAAACCTTTGGGACACAATGAAAGCATTTC  50
      ||||||  | ||||||||||  || ||||||||||| |||||||||||||
seq2  AAATGAGCCAACAATGTACC--AAACTTTGGGACACCATGAAAGCATTTC  48

seq1  TAAGAGGGAAACTCA-TAGCTCTG-AGTGCCTCCAAGAAGAAACGGGAGA  98
      | ||||||||||||| ||||| || ||||||| |||||| |||||| |||
seq2  T-AGAGGGAAACTCATTAGCTATGAAGTGCCT-CAAGAAAAAACGGAAGA  96

seq1  GAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAG  148
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  GAGCACATATAAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAG  146

seq1  GAAGCAAATTCACTCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCA-  197
      ||||||||||||| || |||||||||||||||||||||||||||||||| 
seq2  GAAGCAAATTCACCCAGGAGGAGTAGACGGCAGGAAATAATCAAACTCAG  196

seq1  GGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAAC  246

seq1  CAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTT  296

seq1  AGCTAGACTTACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCA  347
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCA  346

seq1  GAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACC  396

seq1  ATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGA  446

seq1  CGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAGTCAGG  497
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGG  496

seq1  ATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCA  547
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  ATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCA  546

seq1  GTT  550
      |||
seq2  GTT  549


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