BAC Information

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BAC

Clone NameB6Ng01-177G04
Chromosome2 (Build37)
Map Location 46,502,309 - 46,649,703
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042661, LOC100041337, LOC666604, LOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177G04.bB6Ng01-177G04.g
ACCGA004670GA004671
length1,000455
definitionB6Ng01-177G04.b B6Ng01-177G04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,502,309 - 46,503,297)(46,649,243 - 46,649,703)
sequence
gaattcacaggaatagggctttatcatacaatccctttttctccagcaac
tgctataaataatgaggatatgggtataataatgttgtataaaatatacg
tgcactatattgttggaacattatgtatggatattaaaagaagaaacatg
ttttctttaactacatcatttaagcccaaaccacatttaaggatatagaa
acagtgcagtattctgacaagtgtttggtctaaaatcaaagccacatcat
atatactctggaagtaggagaaagttgaatcctcttattaaaagcagact
gtgtgacaatagaaatgtgacaaaatattttacatatctttttatgagaa
ggttaaacactttaggaaaaggataggtagttttttttttctttcatgtt
aactaatccagacaagagcgaacagagatttgctttcttcagcatttatt
gatattaattgctttattgaactagctgtgggaactgggatttcccaatg
ccagcataaaggatcattatttataagctaactgatcccacaaattctac
acttagctcaatatttccgttggatatacggaaagaattctttaaaaact
gttatatttcaggctttttactgtatgtgaaatcacatgagctaaataat
aaaacatttttcagaaaaggaggaattttagcatctcatgtactaggcat
caaatcaatccctgaaaggcattttattattgtggttttttcttccattt
atttttacttctgcccatttggctctgtcatacaggtgtccctagttaca
tccatgagtaaaaacaaaacacatattgtagctcataaatctgtattttg
tgctaaagtatgggaaaaaatcgttagtgcttcctccaatttccttcttt
gaggcaccttagaattgcctctacattgttcttgacctatgaacaccaga
aatcaagctttgattctttggtggggtagggtcataagaacagtatctgt


tctaagagtgtgattttgcttcattcagtatgttaaaacctgaatagaac
aaaagagtgactagaaaggttttgctccctcagtacggacattggctttc
tgattttgtacttgaatctgcactactcattctcttggctttggattcac
acagtattcaccttatagatttgataattagctgtcatctttaatgagta
caagcacatgtgactgtacttgtgcatgcatgtgtataggtgtgttttat
tttttgtagactttcagaaatactgccagagttgttgcgagctatctgat
taataatgaattattgaggatgcttttattagaatttgaaagaaaaatac
taggtaagcaaccctgtaaataaatctcatcagctgcccagatgaagaag
ataagaaataaaaatatagagcagaggagaagggaggggatttgagggga
gggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_46502309_46503297
seq2: B6Ng01-177G04.b_41_1040

seq1  GAATTCACAGGAATAGGGCTTTATCATACAATCCCTTTTTCTCCAGCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGAATAGGGCTTTATCATACAATCCCTTTTTCTCCAGCAAC  50

seq1  TGCTATAAATAATGAGGATATGGGTATAATAATGTTGTATAAAATATACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAAATAATGAGGATATGGGTATAATAATGTTGTATAAAATATACG  100

seq1  TGCACTATATTGTTGGAACATTATGTATGGATATTAAAAGAAGAAACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTATATTGTTGGAACATTATGTATGGATATTAAAAGAAGAAACATG  150

seq1  TTTTCTTTAACTACATCATTTAAGCCCAAACCACATTTAAGGATATAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTAACTACATCATTTAAGCCCAAACCACATTTAAGGATATAGAA  200

seq1  ACAGTGCAGTATTCTGACAAGTGTTTGGTCTAAAATCAAAGCCACATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCAGTATTCTGACAAGTGTTTGGTCTAAAATCAAAGCCACATCAT  250

seq1  ATATACTCTGGAAGTAGGAGAAAGTTGAATCCTCTTATTAAAAGCAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTCTGGAAGTAGGAGAAAGTTGAATCCTCTTATTAAAAGCAGACT  300

seq1  GTGTGACAATAGAAATGTGACAAAATATTTTACATATCTTTTTATGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACAATAGAAATGTGACAAAATATTTTACATATCTTTTTATGAGAA  350

seq1  GGTTAAACACTTTAGGAAAAGGATAGGTAGTTTTTTTTTTCTTTCATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAACACTTTAGGAAAAGGATAGGTAGTTTTTTTTTTCTTTCATGTT  400

seq1  AACTAATCCAGACAAGAGCGAACAGAGATTTGCTTTCTTCAGCATTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATCCAGACAAGAGCGAACAGAGATTTGCTTTCTTCAGCATTTATT  450

seq1  GATATTAATTGCTTTATTGAACTAGCTGTGGGAACTGGGATTTCCCAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAATTGCTTTATTGAACTAGCTGTGGGAACTGGGATTTCCCAATG  500

seq1  CCAGCATAAAGGATCATTATTTATAAGCTAACTGATCCCACAAATTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATAAAGGATCATTATTTATAAGCTAACTGATCCCACAAATTCTAC  550

seq1  ACTTAGCTCAATATTTCCGTTGGATATACGGAAAGAATTCTTTAAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCTCAATATTTCCGTTGGATATACGGAAAGAATTCTTTAAAAACT  600

seq1  GTTATATTTCAGGCTTTTTACTGTATGTGAAATCACATGAGCTAAATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATTTCAGGCTTTTTACTGTATGTGAAATCACATGAGCTAAATAAT  650

seq1  AAAACATTTTTCAGAAAAGGAGGAATTTTAGCATCTCATGTACTAGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTTTCAGAAAAGGAGGAATTTTAGCATCTCATGTACTAGGCAT  700

seq1  CAAATCAATCCCTGAAAGGCATTTTATTATTGTGGTTTTTTCTTCCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAATCCCTGAAAGGCATTTTATTATTGTGGTTTTTTCTTCCATTT  750

seq1  ATTTTTACTTCTGCCCATTTGGCTCTGTCATACAGGTGTCCCTAGTTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACTTCTGCCCATTTGGCTCTGTCATACAGGTGTCCCTAGTTACA  800

seq1  TCCATGAGTAAAAACAAAACACATA-TGTAGCTCATAAATCTGTA-TTTG  848
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  TCCATGAGTAAAAACAAAACACATATTGTAGCTCATAAATCTGTATTTTG  850

seq1  TGCTAAAGTATGGGAAAAAATCGTTAGTGCCTTCCTCCAATTTCCTTCTT  898
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCTAAAGTATGGGAAAAAATCGTTAGTG-CTTCCTCCAATTTCCTTCTT  899

seq1  TGA-GCA-CTTAGAATTG-CTCTACA-TGTTCTGAACTTATGAACA-CAG  943
      ||| ||| |||||||||| ||||||| ||||||  || |||||||| |||
seq2  TGAGGCACCTTAGAATTGCCTCTACATTGTTCTTGACCTATGAACACCAG  949

seq1  AAATCAAGCTTGG--TCTT--GTGTGGTA-GGTCAATAGGACAGTATCTG  988
      ||||||||||| |  ||||  ||| |||| |||||  || ||||||||||
seq2  AAATCAAGCTTTGATTCTTTGGTGGGGTAGGGTCATAAGAACAGTATCTG  999

seq1  T  989
      |
seq2  T  1000


seq1: chr2_46649243_46649703
seq2: B6Ng01-177G04.g_67_527 (reverse)

seq1  TCCCCTCCCCTCAAATCCCCTCCCTTCTCCTCTGCTCTATATTTTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCCTCAAATCCCCTCCCTTCTCCTCTGCTCTATATTTTTATTT  50

seq1  CTTATCTTCTTCATCTGGGCAGCTGATGAGATTTATTTACAGGGTTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTTCTTCATCTGGGCAGCTGATGAGATTTATTTACAGGGTTGCTT  100

seq1  ACCTAGTATTTTTCTTTCAAATTCTAATAAAAGCATCCTCAATAATTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTATTTTTCTTTCAAATTCTAATAAAAGCATCCTCAATAATTCAT  150

seq1  TATTAATCAGATAGCTCGCAACAACTCTGGCAGTATTTCTGAAAGTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATCAGATAGCTCGCAACAACTCTGGCAGTATTTCTGAAAGTCTAC  200

seq1  AAAAAATAAAACACACCTATACACATGCATGCACAAGTACAGTCACATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAACACACCTATACACATGCATGCACAAGTACAGTCACATGT  250

seq1  GCTTGTACTCATTAAAGATGACAGCTAATTATCAAATCTATAAGGTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTACTCATTAAAGATGACAGCTAATTATCAAATCTATAAGGTGAAT  300

seq1  ACTGTGTGAATCCAAAGCCAAGAGAATGAGTAGTGCAGATTCAAGTACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGAATCCAAAGCCAAGAGAATGAGTAGTGCAGATTCAAGTACAA  350

seq1  AATCAGAAAGCCAATGTCCGTACTGAGGGAGCAAAACCTTTCTAGTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAAAGCCAATGTCCGTACTGAGGGAGCAAAACCTTTCTAGTCACT  400

seq1  CTTTTGTTCTATTCAGGTTTTAACATACTGAATGAAGCAAAATCACACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTCTATTCAGGTTTTAACATACTGAATGAAGCAAAATCACACTC  450

seq1  TTAGAGAATTC  461
      |||||||||||
seq2  TTAGAGAATTC  461


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