BAC Information

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BAC

Clone NameB6Ng01-181O08
Chromosome2 (Build37)
Map Location 152,694,349 - 152,833,673
singlet/doubletdoublet
Overlap geneTpx2, Mylk2, Fkhl18, Dusp15, Ttll9
Upstream geneRspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1
Downstream genePdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181O08.bB6Ng01-181O08.g
ACCGA007934GA007935
length1,078858
definitionB6Ng01-181O08.b B6Ng01-181O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,694,349 - 152,695,420)(152,832,823 - 152,833,673)
sequence
gaattcagtggttcctgcagtacagggccctttgaaggaagggcagttaa
gagggtctgttgtcctagggaggtcttgtaccatgccccatagcactgca
actcagagctaacacccagtcagcctgaagatttctttttttttcttttc
tttttaattattattatttatttattttatgtatatgagtacactgtagc
tgtcttcagacacaccagaagagggcatcaaatcccattacagatggttg
tgagccatcatgtggttgctgggaattgaactcaggacctctggaagagc
agtcagtgctcttaaccactgagccatctctccagccccctgaagatttc
tttttacaagttttctctatgttcccaatatctacaggaaggagatatta
acatagcaattttaatgaaattaaatacagagtctgggagagagaaaaaa
ttctgtactttaaaaatcatcttagctgtagtctatttcttcttttcttt
ctgcttttcatatcttgtcacacagttataatcagagtgtccatgcatgc
tgtagttattcagggactcctgagctcctgcagcctgtcacagtgtgctg
ttgctgggacagactgtttttacaccagctttagtcacagcagaatccaa
gataaaacttcagaaaacttggttctgctctactctctcacaccccacgc
tctgaatataaactgtcccttgtccttctaatcttacagttcctgggggc
caaagcttcttcaaggtcaatgtatttaaatggtagataaggccagataa
ggttggtgtggccctaacaatatcttaacaaaggtaggagtcagtacaga
atcttacagccttcctctctgtaggatgctgggtgtggcaaaggcttcgg
gggatggattttgcctctgtcttgatgtgtagtgaatgcacagtgctttc
ctttagttgctaacagtgctggaaatggactttttctcccatttgaatgc
atgactccttcttctgtttgtttcccttactgaatatttcacaagatgag
aaagggccactttgagaacaagtttctt
gaattcactttgatggcagctacctggtgggtttgtggggcacattattt
ctccactggaatttctcctgcctgccagggtgctaagccaaagagcacat
cggttctgtattctggaagcaagaacctcaagtcaatacttgggggttgt
gggtttgggctaccagcctcccatggtcagttcacttcttgatttgctgg
tgattcccagacgttccttcgggcttactttaggtagccaggtttgcatt
tatggacaaagatgacccagaaggtagggagagctgcttgggccccctgg
aggccccttctccgtggggtaagttgccttccagcccaggctacctgtca
actggagccttgctttctggttttaaactcaaaagccccaaatgggaggt
gggttttcccggggaccctggccaagcagccctgactacccagttctcat
ttccagctgagacacaggaggccctagctctggttttcacatagcagagg
acaccatacatttggggcttggcactatcccagacctcctgtggacgagt
ttctcagcacaccggacccatgattaaagagacatcaaaacgtcagcagc
atcccaagctacgcccagtgccgagtagctctaagcctgtgctttattag
atgtggtattagacgtgctctctgagcagtggaacttgctgcttggcctc
tttgggcccagttgccaatcagtcaaggataagcccacccagtttccaaa
gattggctgtttcctggttcaaagatgcacagggtctggagtggggaatt
ccagggagtcctggtctcaagtactagctggttctgtccagtgaaaccag
ctgccacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152694349_152695420
seq2: B6Ng01-181O08.b_48_1125

seq1  GAATTCAGTGGTTCCTGCAGTACAGGGCCCTTTGAAGGAAGGGCAGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTTCCTGCAGTACAGGGCCCTTTGAAGGAAGGGCAGTTAA  50

seq1  GAGGGTCTGTTGTCCTAGGGAGGTCTTGTACCATGCCCCATAGCACTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCTGTTGTCCTAGGGAGGTCTTGTACCATGCCCCATAGCACTGCA  100

seq1  ACTCAGAGCTAACACCCAGTCAGCCTGAAGATTTCTTTTTTTTTCTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGCTAACACCCAGTCAGCCTGAAGATTTCTTTTTTTTTCTTTTC  150

seq1  TTTTTAATTATTATTATTTATTTATTTTATGTATATGAGTACACTGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTATTATTATTTATTTATTTTATGTATATGAGTACACTGTAGC  200

seq1  TGTCTTCAGACACACCAGAAGAGGGCATCAAATCCCATTACAGATGGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAGACACACCAGAAGAGGGCATCAAATCCCATTACAGATGGTTG  250

seq1  TGAGCCATCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGC  300

seq1  AGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCCTGAAGATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCCTGAAGATTTC  350

seq1  TTTTTACAAGTTTTCTCTATGTTCCCAATATCTACAGGAAGGAGATATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACAAGTTTTCTCTATGTTCCCAATATCTACAGGAAGGAGATATTA  400

seq1  ACATAGCAATTTTAATGAAATTAAATACAGAGTCTGGGAGAGAGAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCAATTTTAATGAAATTAAATACAGAGTCTGGGAGAGAGAAAAAA  450

seq1  TTCTGTACTTTAAAAATCATCTTAGCTGTAGTCTATTTCTTCTTTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTACTTTAAAAATCATCTTAGCTGTAGTCTATTTCTTCTTTTCTTT  500

seq1  CTGCTTTTCATATCTTGTCACACAGTTATAATCAGAGTGTCCATGCATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTCATATCTTGTCACACAGTTATAATCAGAGTGTCCATGCATGC  550

seq1  TGTAGTTATTCAGGGACTCCTGAGCTCCTGCAGCCTGTCACAGTGTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTATTCAGGGACTCCTGAGCTCCTGCAGCCTGTCACAGTGTGCTG  600

seq1  TTGCTGGGACAGACTGTTTTTACACCAGCTTTAGTCACAGCAGAATCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGACAGACTGTTTTTACACCAGCTTTAGTCACAGCAGAATCCAA  650

seq1  GATAAAACTTCAGAAAACTTGGTTCTGCTCTACTCTCTCACACCCCACGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAACTTCAGAAAACTTGGTTCTGCTCTACTCTCTCACACCCCACGC  700

seq1  TCTGAATATAAACTGTCCCTTGTCCTTCTAATCTTACAGTTCCTGGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATATAAACTGTCCCTTGTCCTTCTAATCTTACAGTTCCTGGGGGC  750

seq1  CAAAGCTTCTTCAAGGTCAATGTATTTAAATGGTAGATAAGGCCAGATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTCTTCAAGGTCAATGTATTTAAATGGTAGATAAGGCCAGATAA  800

seq1  GGTTGGTGTGGCCCTAACAATATCTTAACAAAGGTAGGAGTCAGTACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTGTGGCCCTAACAATATCTTAACAAAGGTAGGAGTCAGTACAGA  850

seq1  ATC-TACAGCCTTCCTCTCTGTAGGATGCTGGGTGTGGCAAAGGCTTC-G  898
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCTTACAGCCTTCCTCTCTGTAGGATGCTGGGTGTGGCAAAGGCTTCGG  900

seq1  GGGATGGATTTTGCCTCTGTCCTGATGTGTAGTGAATGCACAGTGCTTTC  948
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGGATGGATTTTGCCTCTGTCTTGATGTGTAGTGAATGCACAGTGCTTTC  950

seq1  CTTTAGTTGCTAACAGTGCTGGAAATGGACTTTTCTCCCCATTTGAATGC  998
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  CTTTAGTTGCTAACAGTGCTGGAAATGGACTTTTTCTCCCATTTGAATGC  1000

seq1  ATGACT-CTTCTCTGGTTTGTTT-CCTTACTGATTATTTCAC-AGATGAG  1045
      |||||| |||||   |||||||| ||||||||| |||||||| |||||||
seq2  ATGACTCCTTCTTCTGTTTGTTTCCCTTACTGAATATTTCACAAGATGAG  1050

seq1  -AAGGCCAACTTGGAGAACAAGTTTCTT  1072
       |||| | |||| |||||||||||||||
seq2  AAAGGGCCACTTTGAGAACAAGTTTCTT  1078

seq1: chr2_152832823_152833673
seq2: B6Ng01-181O08.g_68_925 (reverse)

seq1  CGTGGCAGCT-GTTTCACTGGACAGGACCAGCTTGTACTTG-GACCA-GA  47
      |||||||||| |||||||||||||| ||||||| ||||||| ||||| ||
seq2  CGTGGCAGCTGGTTTCACTGGACAGAACCAGCTAGTACTTGAGACCAGGA  50

seq1  CTCCCTGG-ACTCCCCACTCCAG-CCCTGTGCATCTTTGAACCAGG-AAC  94
      |||||||| | |||||||||||| |||||||||||||||||||||| |||
seq2  CTCCCTGGAATTCCCCACTCCAGACCCTGTGCATCTTTGAACCAGGAAAC  100

seq1  AGCCAATCTTTGG-AACTGGGTGGGCTTATCCTTGACTGATTGGCAACTG  143
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCCAATCTTTGGAAACTGGGTGGGCTTATCCTTGACTGATTGGCAACTG  150

seq1  GGCCCAAAGAGGCCAAGCAGCAAGTTCCACTGCTCAGAGAGCACGTCTAA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAAGAGGCCAAGCAGCAAGTTCCACTGCTCAGAGAGCACGTCTAA  200

seq1  TACCACATCTAATAAAGCACAGGCTTAGAGCTACTCGGCACTGGGCGTAG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACATCTAATAAAGCACAGGCTTAGAGCTACTCGGCACTGGGCGTAG  250

seq1  CTTGGGATGCTGCTGACGTTTTGATGTCTCTTTAATCATGGGTCCGGTGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGATGCTGCTGACGTTTTGATGTCTCTTTAATCATGGGTCCGGTGT  300

seq1  GCTGAGAAACTCGTCCACAGGAGGTCTGGGATAGTGCCAAGCCCCAAATG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAAACTCGTCCACAGGAGGTCTGGGATAGTGCCAAGCCCCAAATG  350

seq1  TATGGTGTCCTCTGCTATGTGAAAACCAGAGCTAGGGCCTCCTGTGTCTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGTCCTCTGCTATGTGAAAACCAGAGCTAGGGCCTCCTGTGTCTC  400

seq1  AGCTGGAAATGAGAACTGGGTAGTCAGGGCTGCTTGGCCAGGGTCCCCGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAAATGAGAACTGGGTAGTCAGGGCTGCTTGGCCAGGGTCCCCGG  450

seq1  GAAAACCCACCTCCCATTTGGGGCTTTTGAGTTTAAAACCAGAAAGCAAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCCACCTCCCATTTGGGGCTTTTGAGTTTAAAACCAGAAAGCAAG  500

seq1  GCTCCAGTTGACAGGTAGCCTGGGCTGGAAGGCAACTTACCCCACGGAGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTTGACAGGTAGCCTGGGCTGGAAGGCAACTTACCCCACGGAGA  550

seq1  AGGGGCCTCCAGGGGGCCCAAGCAGCTCTCCCTACCTTCTGGGTCATCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCTCCAGGGGGCCCAAGCAGCTCTCCCTACCTTCTGGGTCATCTT  600

seq1  TGTCCATAAATGCAAACCTGGCTACCTAAAGTAAGCCCGAAGGAACGTCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATAAATGCAAACCTGGCTACCTAAAGTAAGCCCGAAGGAACGTCT  650

seq1  GGGAATCACCAGCAAATCAAGAAGTGAACTGACCATGGGAGGCTGGTAGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCACCAGCAAATCAAGAAGTGAACTGACCATGGGAGGCTGGTAGC  700

seq1  CCAAACCCACAACCCCCAAGTATTGACTTGAGGTTCTTGCTTCCAGAATA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCCACAACCCCCAAGTATTGACTTGAGGTTCTTGCTTCCAGAATA  750

seq1  CAGAACCGATGTGCTCTTTGGCTTAGCACCCTGGCAGGCAGGAGAAATTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCGATGTGCTCTTTGGCTTAGCACCCTGGCAGGCAGGAGAAATTC  800

seq1  CAGTGGAGAAATAATGTGCCCCACAAACCCACCAGGTAGCTGCCATCAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAGAAATAATGTGCCCCACAAACCCACCAGGTAGCTGCCATCAAA  850

seq1  GTGAATTC  851
      ||||||||
seq2  GTGAATTC  858