BAC Information

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BAC

Clone NameB6Ng01-182P03
Chromosome2 (Build37)
Map Location 64,392,720 - 64,546,686
singlet/doubletdoublet
Overlap geneLOC620544
Upstream geneFign
Downstream geneLOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik, Scn3a, Scn2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182P03.bB6Ng01-182P03.g
ACCGA008700GA008701
length1,1961,163
definitionB6Ng01-182P03.b B6Ng01-182P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,545,483 - 64,546,686)(64,392,720 - 64,393,892)
sequence
gaattcatccacttccaagtggtctaataaaatggactcttaaggggatg
tgctctgaggttcctggctaaccatggtcattcagcactctagatctttc
tgatcacctttctgtccttaatagctagaaatcattgacatgaaaaacag
gagccaaaatttaccattagacaaagtacttctggtatacaactagttct
tccccaaacaaaatgataggtatataaaagtgattggagaatatggaggt
gataaaaatctaagaaatgattgcagatttcagataattgttaggtaaaa
ggttctgtgttcatggggaaaagttgacacacagtaatgagtaacatata
aaatatcaagcaaagcatgggactattgtgacagtcctcaaatcttccag
gaaaaatccaagcaaataataaaaatatctcacataacgagtcaatcatc
cagattttcatgtaattttcttttgtggctctgaaagttaaataaaaatg
gaatgtctccttgatttaaataaaacgacatatttctttaaattttctag
ccaagatttgaacttcataacgattaattaagaataattggataagatat
tttcaggtatgcgttttcaataaatttactgttcatgcacattttttgag
aagccaatagagtaagtatgccaacaaaagaaaacaagacaaaacaagat
aaccaaaccaaacaaacaaaaaggaaagaaagaaaagaaaagaaacacaa
tgaaatccagcaagcaatattcaaactcagagaaaacacaaaggcagcca
gaaggtgtgtagaacctgtcccaggtcagaatcccagaagacctgagcca
agaatttggagaaagttatcaacaactctgggtgactaaggagcttaatt
agggcaaagaagaataccaaaactctcactgtagattgcattttgtgtct
actccaagaacacaaatgtgatctcaatgtccaagacttatttagaaatg
acactaccatatcatcataacttaagcactgaattgtagtcttaaacctg
aaaaagcatgatgattatacatgtttctcttaaactaaaactatgtggta
tatggaaactaataaggtgagtgtgccccaaatctcgttagggcatgaag
cgagatagcggttagaaagaaaccaattattttgtggtgaagtgat

gaattctatgattgttcaaatcgatgactatgtactcatgaatccttttg
atgaaatttaaaaattgtaatgtggtccaaataagcaaattaaagaatac
cagccactcccattaaaacatctgcatatttaaaaatatgagagaaagca
ttatttattaatgtgtatgaacatatgaatttatgaaagaaaattaattt
aggatattgattttactaaaaaaaagaaggaaagaaactcgggaagcttg
tcatgagttttatttaaataagtttttaatttaacattttatttttaagt
aaatttgactatttcacaagttttgaaacatagcaacagaatcaacaaaa
atgattctcgggttaacttgctcttttctgccaaatgtctgttactgatt
taaagaagagatgtctaaacatgcctcctattaattcacaatatttatat
tttatacatttagagcatggaagagcgtatgtcagacatggacacacaac
aatgaataagaaagacaaatgccaactcctcaaagcaaagtctagcagta
tttgcataaaatctgttttcataaaggttgtcctgagagttgtagatagc
aaggcacctctaaagaggccctcattcaatcaatcactatggcatacttt
tataaatgagagtctagagaatgcttctgtctcttgggatgcagatgtga
agatcaacgtgacagttaatttaataatgctaatgggaatttgacccaga
atataataaaccctcactacttacagacctgtttattgtacacattataa
tcttgacaacgctaagaaaaagataatgtcactatttccaactcacagat
ttcttctccgcttttgctgtctaatagctggatctgtccacagtcatggg
aaacagacatagtcctcaagcaagtgaagagaatcattcaaaccctacat
actcttttcttttacaacagagaaaagggttgacttatatttttcttctc
ctcatacatcagagcagcaatatcaaaagagctcagaaaatatttaaata
tatgttattacctctactgaaatgcacgctgagtcttattgaattcatga
tagcatgaaggtcaacaaagcccaatggttagatgctacatggaaagcct
taatgacagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_64545483_64546686
seq2: B6Ng01-182P03.b_45_1240 (reverse)

seq1  ATCACTTTAACAGACATCACAAAATAA-TGGTT--TTTCTAA-CGCTTAC  46
      |||||||       || |||||||||| |||||  ||||||| ||||  |
seq2  ATCACTT-------CACCACAAAATAATTGGTTTCTTTCTAACCGCTATC  43

seq1  TCGCCTTCTATTCCCCAAAGGAGAATTGGGGCACATTCACCTTATTAGTT  96
      ||| ||||   | ||| || |||| |||||||||| ||||||||||||||
seq2  TCG-CTTC--ATGCCCTAACGAGATTTGGGGCACACTCACCTTATTAGTT  90

seq1  CCAATA---CACATAGTTTTTAGTTTTAGAGAAAACATTGTATAATCATT  143
       | |||   ||||||| ||||||||| |||| ||||| |||||||||| |
seq2  TCCATATACCACATAG-TTTTAGTTTAAGAG-AAACA-TGTATAATCA-T  136

seq1  CATTGCCTTTTTTCAGGTTTAAGACTACAATTCAGTGCTTAAGTTATGAT  193
      || |||  ||||||||||||||||||||||||||||||||||||||||||
seq2  CA-TGC--TTTTTCAGGTTTAAGACTACAATTCAGTGCTTAAGTTATGAT  183

seq1  GATATGGTAGTGTCATTTCTAAATAAGTCTTGGACATTGAGATCACATTT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGTAGTGTCATTTCTAAATAAGTCTTGGACATTGAGATCACATTT  233

seq1  GTG-TCTTGGAGTAGACACAAAATGCAATCTACAGTGAGAGTTTTGGTAT  292
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTGGAGTAGACACAAAATGCAATCTACAGTGAGAGTTTTGGTAT  283

seq1  TC-TCTTTGCCCTAATTAAGCTCCTTAGTCACCCAGAGTTGTTGATAACT  341
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTGCCCTAATTAAGCTCCTTAGTCACCCAGAGTTGTTGATAACT  333

seq1  TTCTCCAAATTCTTGGCTCAGGTCTTCTGGGATTCTGACCTGGGACAGGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAAATTCTTGGCTCAGGTCTTCTGGGATTCTGACCTGGGACAGGT  383

seq1  TCTACACACCTTCTGGCTGCCTTTGTGTTTTCTCTGAGTTTGAATATTGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACACCTTCTGGCTGCCTTTGTGTTTTCTCTGAGTTTGAATATTGC  433

seq1  TTGCTGGATTTCATTGTGTTTCTTTTCTTTTCTTTCTTTCCTTTTTGTTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGATTTCATTGTGTTTCTTTTCTTTTCTTTCTTTCCTTTTTGTTT  483

seq1  GTTTGGTTTGGTTATCTTGTTTTGTCTTGTTTTCTTTTGTTGGCATACTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTTGGTTATCTTGTTTTGTCTTGTTTTCTTTTGTTGGCATACTT  533

seq1  ACTCTATTGGCTTCTCAAAAAATGTGCATGAACAGTAAATTTATTGAAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATTGGCTTCTCAAAAAATGTGCATGAACAGTAAATTTATTGAAAA  583

seq1  CGCATACCTGAAAATATCTTATCCAATTATTCTTAATTAATCGTTATGAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATACCTGAAAATATCTTATCCAATTATTCTTAATTAATCGTTATGAA  633

seq1  GTTCAAATCTTGGCTAGAAAATTTAAAGAAATATGTCGTTTTATTTAAAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATCTTGGCTAGAAAATTTAAAGAAATATGTCGTTTTATTTAAAT  683

seq1  CAAGGAGACATTCCATTTTTATTTAACTTTCAGAGCCACAAAAGAAAATT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGACATTCCATTTTTATTTAACTTTCAGAGCCACAAAAGAAAATT  733

seq1  ACATGAAAATCTGGATGATTGACTCGTTATGTGAGATATTTTTATTATTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAAATCTGGATGATTGACTCGTTATGTGAGATATTTTTATTATTT  783

seq1  GCTTGGATTTTTCCTGGAAGATTTGAGGACTGTCACAATAGTCCCATGCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGATTTTTCCTGGAAGATTTGAGGACTGTCACAATAGTCCCATGCT  833

seq1  TTGCTTGATATTTTATATGTTACTCATTACTGTGTGTCAACTTTTCCCCA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGATATTTTATATGTTACTCATTACTGTGTGTCAACTTTTCCCCA  883

seq1  TGAACACAGAACCTTTTACCTAACAATTATCTGAAATCTGCAATCATTTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAGAACCTTTTACCTAACAATTATCTGAAATCTGCAATCATTTC  933

seq1  TTAGATTTTTATCACCTCCATATTCTCCAATCACTTTTATATACCTATCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTTTATCACCTCCATATTCTCCAATCACTTTTATATACCTATCA  983

seq1  TTTTGTTTGGGGAAGAACTAGTTGTATACCAGAAGTACTTTGTCTAATGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGGGGAAGAACTAGTTGTATACCAGAAGTACTTTGTCTAATGG  1033

seq1  TAAATTTTGGCTCCTGTTTTTCATGTCAATGATTTCTAGCTATTAAGGAC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTGGCTCCTGTTTTTCATGTCAATGATTTCTAGCTATTAAGGAC  1083

seq1  AGAAAGGTGATCAGAAAGATCTAGAGTGCTGAATGACCATGGTTAGCCAG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTGATCAGAAAGATCTAGAGTGCTGAATGACCATGGTTAGCCAG  1133

seq1  GAACCTCAGAGCACATCCCCTTAAGAGTCCATTTTATTAGACCACTTGGA  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCAGAGCACATCCCCTTAAGAGTCCATTTTATTAGACCACTTGGA  1183

seq1  AGTGGATGAATTC  1204
      |||||||||||||
seq2  AGTGGATGAATTC  1196


seq1: chr2_64392720_64393892
seq2: B6Ng01-182P03.g_67_1229

seq1  GAATTCTATGATTGTTCAAATCGATGACTATGTACTCATGAATCCTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGATTGTTCAAATCGATGACTATGTACTCATGAATCCTTTTG  50

seq1  ATGAAATTTAAAAATTGTAATGTGGTCCAAATAAGCAAATTAAAGAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTTAAAAATTGTAATGTGGTCCAAATAAGCAAATTAAAGAATAC  100

seq1  CAGCCACTCCCATTAAAACATCTGCATATTTAAAAATATGAGAGAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTCCCATTAAAACATCTGCATATTTAAAAATATGAGAGAAAGCA  150

seq1  TTATTTATTAATGTGTATGAACATATGAATTTATGAAAGAAAATTAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTAATGTGTATGAACATATGAATTTATGAAAGAAAATTAATTT  200

seq1  AGGATATTGATTTTACTAAAAAAAAGAAGGAAAGAAACTCGGGAAGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTGATTTTACTAAAAAAAAGAAGGAAAGAAACTCGGGAAGCTTG  250

seq1  TCATGAGTTTTATTTAAATAAGTTTTTAATTTAACATTTTATTTTTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGTTTTATTTAAATAAGTTTTTAATTTAACATTTTATTTTTAAGT  300

seq1  AAATTTGACTATTTCACAAGTTTTGAAACATAGCAACAGAATCAACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGACTATTTCACAAGTTTTGAAACATAGCAACAGAATCAACAAAA  350

seq1  ATGATTCTCGGGTTAACTTGCTCTTTTCTGCCAAATGTCTGTTACTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTCGGGTTAACTTGCTCTTTTCTGCCAAATGTCTGTTACTGATT  400

seq1  TAAAGAAGAGATGTCTAAACATGCCTCCTATTAATTCACAATATTTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGAGATGTCTAAACATGCCTCCTATTAATTCACAATATTTATAT  450

seq1  TTTATACATTTAGAGCATGGAAGAGCGTATGTCAGACATGGACACACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACATTTAGAGCATGGAAGAGCGTATGTCAGACATGGACACACAAC  500

seq1  AATGAATAAGAAAGACAAATGCCAACTCCTCAAAGCAAAGTCTAGCAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATAAGAAAGACAAATGCCAACTCCTCAAAGCAAAGTCTAGCAGTA  550

seq1  TTTGCATAAAATCTGTTTTCATAAAGGTTGTCCTGAGAGTTGTAGATAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATAAAATCTGTTTTCATAAAGGTTGTCCTGAGAGTTGTAGATAGC  600

seq1  AAGGCACCTCTAAAGAGGCCCTCATTCAATCAATCACTATGGCATACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACCTCTAAAGAGGCCCTCATTCAATCAATCACTATGGCATACTTT  650

seq1  TATAAATGAGAGTCTAGAGAATGCTTCTGTCTCTTGGGATGCAGATGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGAGAGTCTAGAGAATGCTTCTGTCTCTTGGGATGCAGATGTGA  700

seq1  AGATCAACGTGACAGTTAATTTAATAATGCTAATGGGAATTTGACCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAACGTGACAGTTAATTTAATAATGCTAATGGGAATTTGACCCAGA  750

seq1  ATATAATAAACCCTCACTACTTACAGACCTGTTTATTGTACACATTATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATAAACCCTCACTACTTACAGACCTGTTTATTGTACACATTATAA  800

seq1  TCTTGACAACGCTAAGAAAAAGATAATGTCACTATTTCCAACTCACAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACAACGCTAAGAAAAAGATAATGTCACTATTTCCAACTCACAGAT  850

seq1  TTCTTCTCCGCTTTTGCTGTCTAATAGCTGGATCTGTCCACAGTCATGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCCGCTTTTGCTGTCTAATAGCTGGATCTGTCCACAGTCATGGG  900

seq1  AAACAGACATAGTCCTCAAGCAAGTGAAGAAGAATCATTCAAA-CCTACA  949
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  AAACAGACATAGTCCTCAAGCAAGTGAAG-AGAATCATTCAAACCCTACA  949

seq1  TACTCTTT--CTTTACAACAGAGAAAAGGGTTGACTTATATTTTTCTTCC  997
      ||||||||   |||||||||||||||||||||||||||||||||||||| 
seq2  TACTCTTTTCTTTTACAACAGAGAAAAGGGTTGACTTATATTTTTCTTCT  999

seq1  TCTCATACATCAGAGCAGCAATATCAAAAGAGCTCAGAAAATATTTAAAT  1047
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATACATCAGAGCAGCAATATCAAAAGAGCTCAGAAAATATTTAAAT  1049

seq1  ATATGT--ATACCTCTACTGAAAATGCACGGCTGAGGTCTATGGAAATAC  1095
      ||||||   ||||||||||| |||||||| ||||||   ||| ||| |  
seq2  ATATGTTATTACCTCTACTG-AAATGCAC-GCTGAGTCTTATTGAATT--  1095

seq1  CATGATAAGGCAATTGAGGTCAACAAAGCCCCATGGTTAAGAGTGGCCTA  1145
      |||||||  || ||  ||||||||||||||| |||||| ||| ||  |||
seq2  CATGATA--GC-ATGAAGGTCAACAAAGCCCAATGGTT-AGA-TG--CTA  1138

seq1  TCATGGAAAAGCCTTAAAGGACAGAGAG  1173
       ||||| |||||||| || |||||||||
seq2  -CATGG-AAAGCCTT-AATGACAGAGAG  1163


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