BAC Information

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BAC

Clone NameB6Ng01-183H18
Chromosome2 (Build37)
Map Location 117,932,225 - 118,043,147
singlet/doubletdoublet
Overlap geneThbs1, Fsip1
Upstream geneSpred1, LOC624574, 2610510H03Rik, Rasgrp1
Downstream geneGpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183H18.bB6Ng01-183H18.g
ACCGA009094GA009095
length1,1081,177
definitionB6Ng01-183H18.b B6Ng01-183H18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,042,050 - 118,043,147)(117,932,225 - 117,933,399)
sequence
gaattcagccctttctttgtgttgataccaaggctgtggctttgaacacc
tgaacttctaggtttcagtatcaggacatggctctctccatgtgtagtaa
attcctattcctaatatcttttgtttgtgtgacataatatagtactgtat
ttttgatgactttattttgggagaggatgtagtacatgaaaaatatcatc
cgtaaaattctgcctgaaaattttatttaaaaagttggcacaagttaaaa
tgttatttagaagcctgatgaggtagcctcgggggtggggtgtctgctgc
caggcctgatgatctgagttcaattcttaggatccacatgttggagggag
aacgtatttctgtaggttgccctgtgacccccacatgtgggccatggtcc
atgaccacctacacatatacacacacaaacacaagataaaagtaaaacca
ttgaatttttacttttgatcagtgttgtatattgatctaaatatatgttt
gccttggctttaaaaataagacaacttaaaatgatacactaataataaaa
caagatgtgtgtctgtagggcagatgtctcatagaaatgtaaatgtcagc
gctgctttagctgaaagtttggttaaggtgatattagagcagcccacgtg
agctgggataccccaggctcctgaggagataagggagtgcgaattttggg
tttacatgggggtagcagacggctggagaaaggagggatactctgaaagt
tttgcctggaattatgaatcagataaggtttcatgtttagagacaaaatg
gccttgtagtcagatttctgtgccaacagaataatctgggtaagacagtt
ctgggttttacttgcatgacagactagatgtctgcagaaactaaaaaaga
cccgtacaagctgcataagatgtattttttatagggtaattaaaaacagt
tcactatttttattgagaatataacccataaaatttttattgattaaatt
taatctatataaaggtagagtataataattcgatacatagctttcattaa
ggtcaaaggtaaggaacactcccagctttctggaaacgtcataaatgtct
tacattgt
gaattctgagaagttgactttgggattctagcaaggcgaatccagatctc
tcagttctttattcttatatgttaacctcaaggaaggcaggtggatgggg
gactagaagggagaaaggtagaaagaaaaaggagtcgagatgttgatgaa
aagaggaaacagaagatgagggagaaggagaaagaaaatgaaagggaaaa
agaacatacagaggaaaggccggatcatgcagccagccagagacggccaa
gctcccacatcctcatcatcgtcctgggaacagccatgtttaccatcagt
gccatactaaaatgaaacagggttttgttttcagaccatacactcttaaa
ttagaaagaagagtggttcttttggctagggttctacaaaatccaatttg
acatgatcccatgagaaaaagaagatgaagagaaggagagaggaggaggg
agagagagagctttctgaaagattgatgtccctgtgcccagcagctcggc
catctggacaccatccacacatttcagcggcatgtgaggccttccccgaa
gcttcagttgatgccagtctccatgtcgtagtgggccttcagatacgttt
atgaagtccaaacactggtcaggtccctctttatgtctgctcgtcttatt
tttctgacactcgtcatcttcttccaggaaaggtaacagaaaacttggac
ttatcacttaatctggagcacacatgtgaaaacctcaaacactttgaaaa
actataatctgccagtgcctggcgtgagggagcatgtcacaccttacctt
aaggaaactagattcttttagggtttaatcagcttctaaagcaatattgc
atcatggcagttctgggaactgcactgtctcatggcttttcagattcatg
aattttccttaccagggacctctgagggccagcctatgaatagcccagtg
gaaacccacctagcccaggctaactacttaatccaactcctggaaaacac
tcacagccatctcggagcctttcagtgtgaggttcttcacctcggaaagt
ccttcttcactggaagtcactgcttgttcgttggggtcacatgatggtat
tcgttcagtctctaacaggaaaacaggaactggtctcagaccagttttct
cgtagtagaccagcgttatgcttacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_118042050_118043147
seq2: B6Ng01-183H18.b_48_1155 (reverse)

seq1  ACAATGT-AGACATTATTGACG-TTCCAG-AAGCTGGGAGTGTTCCTTAC  47
      ||||||| |||||||  ||||| |||||| ||||||||||||||||||||
seq2  ACAATGTAAGACATTTATGACGTTTCCAGAAAGCTGGGAGTGTTCCTTAC  50

seq1  C-TTGA-CTTAATG-AAGCTATGTATCGAATTATTATACTCTACC-TTAT  93
      | |||| ||||||| |||||||||||||||||||||||||||||| ||||
seq2  CTTTGACCTTAATGAAAGCTATGTATCGAATTATTATACTCTACCTTTAT  100

seq1  ATAGATTAAAATTTTAATCAAT-AAAATTTTAT-GGTTATA-TCTCAATA  140
      ||||||||||  |||||||||| |||||||||| ||||||| ||||||||
seq2  ATAGATTAAA--TTTAATCAATAAAAATTTTATGGGTTATATTCTCAATA  148

seq1  AAAATAGTGAACTGTTTTTAATTACCCTATAAAAAATACATCTTATGCAG  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTGAACTGTTTTTAATTACCCTATAAAAAATACATCTTATGCAG  198

seq1  CTTGTACGGGTCTTTTTTAGTTTCTGCAGACATCTAGTCTGTCATGCAAG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACGGGTCTTTTTTAGTTTCTGCAGACATCTAGTCTGTCATGCAAG  248

seq1  TAAAA-CCAGAACTGTCTTACCCAGATTATTCTGTTGGCACAG-AATCTG  288
      ||||| ||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAAAACCCAGAACTGTCTTACCCAGATTATTCTGTTGGCACAGAAATCTG  298

seq1  ACTACAAGGCCATTTTGTCTCTAAACATGAAACCTTATCTGATTCATAAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAGGCCATTTTGTCTCTAAACATGAAACCTTATCTGATTCATAAT  348

seq1  TCCAGGCAAAACTTTCAGAGTATCCCTCCTTTCTCCAGCCGTCTGCTACC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAAAACTTTCAGAGTATCCCTCCTTTCTCCAGCCGTCTGCTACC  398

seq1  CCCATGTAAACCCAAAATTCGCACTCCCTTATCTCCTCAGGAGCCTGGGG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTAAACCCAAAATTCGCACTCCCTTATCTCCTCAGGAGCCTGGGG  448

seq1  TATCCCAGCTCACGTGGGCTGCTCTAATATCACCTTAACCAAACTTTCAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAGCTCACGTGGGCTGCTCTAATATCACCTTAACCAAACTTTCAG  498

seq1  CTAAAGCAGCGCTGACATTTACATTTCTATGAGACATCTGCCCTACAGAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCAGCGCTGACATTTACATTTCTATGAGACATCTGCCCTACAGAC  548

seq1  ACACATCTTGTTTTATTATTAGTGTATCATTTTAAGTTGTCTTATTTTTA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCTTGTTTTATTATTAGTGTATCATTTTAAGTTGTCTTATTTTTA  598

seq1  AAGCCAAGGCAAACATATATTTAGATCAATATACAACACTGATCAAAAGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGGCAAACATATATTTAGATCAATATACAACACTGATCAAAAGT  648

seq1  AAAAATTCAATGGTTTTACTTTTATCTTGTGTTTGTGTGTGTATATGTGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCAATGGTTTTACTTTTATCTTGTGTTTGTGTGTGTATATGTGT  698

seq1  AGGTGGTCATGGACCATGGCCCACATGTGGGGGTCACAGGGCAACCTACA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTCATGGACCATGGCCCACATGTGGGGGTCACAGGGCAACCTACA  748

seq1  GAAATACGTTCTCCCTCCAACATGTGGATCCTAAGAATTGAACTCAGATC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACGTTCTCCCTCCAACATGTGGATCCTAAGAATTGAACTCAGATC  798

seq1  ATCAGGCCTGGCAGCAGACACCCCACCCCCGAGGCTACCTCATCAGGCTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCCTGGCAGCAGACACCCCACCCCCGAGGCTACCTCATCAGGCTT  848

seq1  CTAAATAACATTTTAACTTGTGCCAACTTTTTAAATAAAATTTTCAGGCA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAACATTTTAACTTGTGCCAACTTTTTAAATAAAATTTTCAGGCA  898

seq1  GAATTTTACGGATGATATTTTTCATGTACTACATCCTCTCCCAAAATAAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTACGGATGATATTTTTCATGTACTACATCCTCTCCCAAAATAAA  948

seq1  GTCATCAAAAATACAGTACTATATTATGTCACACAAACAAAAGATATTAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAAAAATACAGTACTATATTATGTCACACAAACAAAAGATATTAG  998

seq1  GAATAGGAATTTACTACACATGGAGAGAGCCATGTCCTGATACTGAAACC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGAATTTACTACACATGGAGAGAGCCATGTCCTGATACTGAAACC  1048

seq1  TAGAAGTTCAGGTGTTCAAAGCCACAGCCTTGGTATCAACACAAAGAAAG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTCAGGTGTTCAAAGCCACAGCCTTGGTATCAACACAAAGAAAG  1098

seq1  GGCTGAATTC  1098
      ||||||||||
seq2  GGCTGAATTC  1108

seq1: chr2_117932225_117933399
seq2: B6Ng01-183H18.g_66_1242

seq1  GAATTCTGAGAAGTTGACTTTGGGATTCTAGCAAGGCGAATCCAGATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGAAGTTGACTTTGGGATTCTAGCAAGGCGAATCCAGATCTC  50

seq1  TCAGTTCTTTATTCTTATATGTTAACCTCAAGGAAGGCAGGTGGATGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTTTATTCTTATATGTTAACCTCAAGGAAGGCAGGTGGATGGGG  100

seq1  GACTAGAAGGGAGAAAGGTAGAAAGAAAAAGGAGTCGAGATGTTGATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAAGGGAGAAAGGTAGAAAGAAAAAGGAGTCGAGATGTTGATGAA  150

seq1  AAGAGGAAACAGAAGATGAGGGAGAAGGAGAAAGAAAATGAAAGGGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAACAGAAGATGAGGGAGAAGGAGAAAGAAAATGAAAGGGAAAA  200

seq1  AGAACATACAGAGGAAAGGCCGGATCATGCAGCCAGCCAGAGACGGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATACAGAGGAAAGGCCGGATCATGCAGCCAGCCAGAGACGGCCAA  250

seq1  GCTCCCACATCCTCATCATCGTCCTGGGAACAGCCATGTTTACCATCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCACATCCTCATCATCGTCCTGGGAACAGCCATGTTTACCATCAGT  300

seq1  GCCATACTAAAATGAAACAGGGTTTTGTTTTCAGACCATACACTCTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACTAAAATGAAACAGGGTTTTGTTTTCAGACCATACACTCTTAAA  350

seq1  TTAGAAAGAAGAGTGGTTCTTTTGGCTAGGGTTCTACAAAATCCAATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGAAGAGTGGTTCTTTTGGCTAGGGTTCTACAAAATCCAATTTG  400

seq1  ACATGATCCCATGAGAAAAAGAAGATGAAGAGAAGGAGAGAGGAGGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATCCCATGAGAAAAAGAAGATGAAGAGAAGGAGAGAGGAGGAGGG  450

seq1  AGAGAGAGAGCTTTCTGAAAGATTGATGTCCCTGTGCCCAGCAGCTCGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGCTTTCTGAAAGATTGATGTCCCTGTGCCCAGCAGCTCGGC  500

seq1  CATCTGGACACCATCCACACATTTCAGCGGCATGTGAGGCCTTCCCCGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGACACCATCCACACATTTCAGCGGCATGTGAGGCCTTCCCCGAA  550

seq1  GCTTCAGTTGATGCCAGTCTCCATGTCGTAGTGGGCCTTCAGATACGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTTGATGCCAGTCTCCATGTCGTAGTGGGCCTTCAGATACGTTT  600

seq1  ATGAAGTCCAAACACTGGTCAGGTCCCTCTTTATGTCTGCTCGTCTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCCAAACACTGGTCAGGTCCCTCTTTATGTCTGCTCGTCTTATT  650

seq1  TTTCTGACACTCGTCATCTTCTTCCAGGAAAGGTAACAGAAAACTTGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGACACTCGTCATCTTCTTCCAGGAAAGGTAACAGAAAACTTGGAC  700

seq1  TTATCACTTAATCTGGAGCACACATGTGAAAACCTCAAACACTTTGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACTTAATCTGGAGCACACATGTGAAAACCTCAAACACTTTGAAAA  750

seq1  ACTATAATCTGCCAGTGCCTGGCGTGAGGGAGCATGTCACACCTTACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATCTGCCAGTGCCTGGCGTGAGGGAGCATGTCACACCTTACCTT  800

seq1  AAGGAAACTAGATTCTTTTAGGGTTTAATCAGCTTCTAAAGCAATATTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACTAGATTCTTTTAGGGTTTAATCAGCTTCTAAAGCAATATTGC  850

seq1  ATCATGGCAGTTCTGGGAACTGCACTGTCTCATGGCTTTTCAGATTCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGCAGTTCTGGGAACTGCACTGTCTCATGGCTTTTCAGATTCATG  900

seq1  AA-TTTCCTTACCAGGGACCTCTGAGGGCCAGCCTATGAATAGCCAAGTG  949
      || |||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATTTTCCTTACCAGGGACCTCTGAGGGCCAGCCTATGAATAGCCCAGTG  950

seq1  GAAACACACCTAGCCCAGGCTAACTACTTAATCCAAACTCCTGGAAAACA  999
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  GAAACCCACCTAGCCCAGGCTAACTACTTAATCC-AACTCCTGGAAAACA  999

seq1  CTCACAGCCCATCTCGGGAGCTTTCCAGTGTGAGG-TCTTCACCTCGGGA  1048
      ||||||| ||||||| ||||| || |||||||||| |||||||||||| |
seq2  CTCACAG-CCATCTC-GGAGCCTTTCAGTGTGAGGTTCTTCACCTCGGAA  1047

seq1  AGTCCTTCTTCACT-GAAGTCACTGCT--GTCGTGGGGGTCACATGATTG  1095
      |||||||||||||| ||||||||||||   |||| |||||||||||| ||
seq2  AGTCCTTCTTCACTGGAAGTCACTGCTTGTTCGTTGGGGTCACATGA-TG  1096

seq1  GAATCCTTTCAGTCTCAACAAGAAAAACAAGGACGGGTCTCAGACCCATT  1145
      | || | ||||||||| |  || |||||| | || ||||||||| ||| |
seq2  GTATTCGTTCAGTCTCTAACAGGAAAACAGGAACTGGTCTCAGA-CCAGT  1145

seq1  TTTCTCCTTAGTAAACCAGC-TTA--CTTACAC  1175
      ||||| | ||||| |||||| |||  |||||||
seq2  TTTCT-CGTAGTAGACCAGCGTTATGCTTACAC  1177