BAC Information

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BAC

Clone NameB6Ng01-184D24
Chromosome2 (Build37)
Map Location 25,742,221 - 25,912,427
singlet/doubletdoublet
Overlap geneKcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a
Upstream geneEhmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1
Downstream geneC330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184D24.bB6Ng01-184D24.g
ACCGA009673GA009674
length886900
definitionB6Ng01-184D24.b B6Ng01-184D24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,742,221 - 25,743,105)(25,911,528 - 25,912,427)
sequence
gaattctgtgaccagcaaacccactgtgacccaggcccctccccagccca
ggtatagggcattagggcaaggctcctgagcacccagtagtccacactta
ccaggctttaggctgactggtgttaaaacactttggggctgttggaatag
tcagtcctagcgaggcactgacatggaactctccaactgtcttgacggaa
cctgtacctgatcagaggaacatgatgtccagcatctacctgccctgggt
ttggtgcccccttccccaggtgacagtaacagtgagtgggaaatggtaga
aacagattggctgatatttgtctcctttgcctacagaaaggcagcaactt
ctccatgcagggtccttccaggcagcaagacaagtctgcagggcacattg
tccttctagccttctgtcctatggtccctggtactgtgtcccacatcatt
tcatcctagggacattgcagcctgttggggaggacgtactggtaggagcc
atgtgtcctctcaagggtacctgactgccccagttcacaggggaaatgct
gcaagctggccacacttgctaaaggagtccaggctccgaactcggactcc
tcccattcttcctatgtcagcacggatgtttcacctcctgcttctgaatg
tttctgaagctgaggagagcaggaccacgtctgaggctgggatcctgaga
atagaggcttatcttccattagccacagttaatctcagtgaacacttggc
tcttcctgggtgtggcactggggcatcagtgagcagtgaatagctcactc
gctgtttatactgggtgatgttcggacctcagagaacgtgggtgtggcct
ctgtgtgtggtgccatgggggattggggattggtgg
gaattctgtattgttttctataccagttgcttcagctaacatctgatttg
gtgtcttactttgcccttggatgtagatgcagccagtgatgtatgaaagg
caattgaggagagactctgaggggtcctttgtggtgtgactgcaggtgtg
ggcctcgaagaaaactagatgtgtggtgtttgtttagaacctaaaggaag
gcagaaaggggctgtgagagctggcaagctgacagggccagtcccctcca
agggactgtggggtgcctgctgctacctgcttcaacagcaggaccttccc
aagcccagtgcatgttgtgctctgccccactgtcctctgcttgggttccc
taaagatggtgattcttagctgacttggggaagagcaggtggcctatcaa
ccagctgaaaactcgaaagaccctgttagaacctgcttgccgcagatccc
agatgggaatggcgacaagcacatgatctgtcagctttacgcacttcact
tcgtggaaaggtgctgctgctgggtggttctgcatgtcaggcagctcagc
ctatgctgctagaagaagggctcagtacaaagtgtttcaaaagtggcaaa
ggtgtttgctttgtttgttttgttttcctagaaaggaaaaggatgcagga
tctaaaaccttctgattgaatagcctctgcttgtgtcccattggtcccct
cactgcaagctcgattgtgatttttatgtcaaaggaagccaaaatttgca
atactatttttagcagacaaaaagataactcggtataaaatgtataaata
tttttgacttgaacattttgggtgtctctgggtgcaagaagaacattaat
cccttcagggggatgtttggagaacaggaccggaggaagggggttgtttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_25742221_25743105
seq2: B6Ng01-184D24.b_42_927

seq1  GAATTCTGTGACCAGCAAACCCACTGTGACCCAGGCCCCTCCCCAGCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGACCAGCAAACCCACTGTGACCCAGGCCCCTCCCCAGCCCA  50

seq1  GGTATAGGGCATTAGGGCAAGGCTCCTGAGCACCCAGTAGTCCACACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGGGCATTAGGGCAAGGCTCCTGAGCACCCAGTAGTCCACACTTA  100

seq1  CCAGGCTTTAGGCTGACTGGTGTTAAAACACTTTGGGGCTGTTGGAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTTTAGGCTGACTGGTGTTAAAACACTTTGGGGCTGTTGGAATAG  150

seq1  TCAGTCCTAGCGAGGCACTGACATGGAACTCTCCAACTGTCTTGACGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTAGCGAGGCACTGACATGGAACTCTCCAACTGTCTTGACGGAA  200

seq1  CCTGTACCTGATCAGAGGAACATGATGTCCAGCATCTACCTGCCCTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACCTGATCAGAGGAACATGATGTCCAGCATCTACCTGCCCTGGGT  250

seq1  TTGGTGCCCCCTTCCCCAGGTGACAGTAACAGTGAGTGGGAAATGGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCCCCCTTCCCCAGGTGACAGTAACAGTGAGTGGGAAATGGTAGA  300

seq1  AACAGATTGGCTGATATTTGTCTCCTTTGCCTACAGAAAGGCAGCAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTGGCTGATATTTGTCTCCTTTGCCTACAGAAAGGCAGCAACTT  350

seq1  CTCCATGCAGGGTCCTTCCAGGCAGCAAGACAAGTCTGCAGGGCACATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGCAGGGTCCTTCCAGGCAGCAAGACAAGTCTGCAGGGCACATTG  400

seq1  TCCTTCTAGCCTTCTGTCCTATGGTCCCTGGTACTGTGTCCCACATCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAGCCTTCTGTCCTATGGTCCCTGGTACTGTGTCCCACATCATT  450

seq1  TCATCCTAGGGACATTGCAGCCTGTTGGGGAGGACGTACTGGTAGGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTAGGGACATTGCAGCCTGTTGGGGAGGACGTACTGGTAGGAGCC  500

seq1  ATGTGTCCTCTCAAGGGTACCTGACTGCCCCAGTTCACAGGGGAAATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCTCTCAAGGGTACCTGACTGCCCCAGTTCACAGGGGAAATGCT  550

seq1  GCAAGCTGGCCACACTTGCTAAAGGAGTCCAGGCTCCGAACTCGGACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTGGCCACACTTGCTAAAGGAGTCCAGGCTCCGAACTCGGACTCC  600

seq1  TCCCATTCTTCCTATGTCAGCACGGATGTTTCACCTCCTGCTTCTGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTCTTCCTATGTCAGCACGGATGTTTCACCTCCTGCTTCTGAATG  650

seq1  TTTCTGAAGCTGAGGAGAGCAGGACCACGTCTGAGGCTGGGATCCTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAGCTGAGGAGAGCAGGACCACGTCTGAGGCTGGGATCCTGAGA  700

seq1  ATAGAGGCTTATCTTCCATTAGCCACAGTTAATCTCAGTGAACACTTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGCTTATCTTCCATTAGCCACAGTTAATCTCAGTGAACACTTGGC  750

seq1  TCTTCCTGGGTGTGGCACTGGGGCATCAGTGAGCAGTGAATAGCTCACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGGGTGTGGCACTGGGGCATCAGTGAGCAGTGAATAGCTCACTC  800

seq1  GCTGTTTATACTGGGTGATGTTCGGACCTCAGAGAACGTGGGTGTGGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTATACTGGGTGATGTTCGGACCTCAGAGAACGTGGGTGTGGCCT  850

seq1  CTGTGTGTGGTGCCATGGGGGATTGGGGA-TGGTGG  885
      ||||||||||||||||||||||||||||| ||||||
seq2  CTGTGTGTGGTGCCATGGGGGATTGGGGATTGGTGG  886

seq1: chr2_25911528_25912427
seq2: B6Ng01-184D24.g_68_967 (reverse)

seq1  AAAACAACCCCCTTCCTCCGGTCCTGTTCTCCAAACATCCCCCTGAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACCCCCTTCCTCCGGTCCTGTTCTCCAAACATCCCCCTGAAGGG  50

seq1  ATTAATGTTCTTCTTGCACCCAGAGACACCCAAAATGTTCAAGTCAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTTCTTCTTGCACCCAGAGACACCCAAAATGTTCAAGTCAAAAA  100

seq1  TATTTATACATTTTATACCGAGTTATCTTTTTGTCTGCTAAAAATAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATACATTTTATACCGAGTTATCTTTTTGTCTGCTAAAAATAGTAT  150

seq1  TGCAAATTTTGGCTTCCTTTGACATAAAAATCACAATCGAGCTTGCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTTTGGCTTCCTTTGACATAAAAATCACAATCGAGCTTGCAGTG  200

seq1  AGGGGACCAATGGGACACAAGCAGAGGCTATTCAATCAGAAGGTTTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACCAATGGGACACAAGCAGAGGCTATTCAATCAGAAGGTTTTAGA  250

seq1  TCCTGCATCCTTTTCCTTTCTAGGAAAACAAAACAAACAAAGCAAACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATCCTTTTCCTTTCTAGGAAAACAAAACAAACAAAGCAAACACC  300

seq1  TTTGCCACTTTTGAAACACTTTGTACTGAGCCCTTCTTCTAGCAGCATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCACTTTTGAAACACTTTGTACTGAGCCCTTCTTCTAGCAGCATAG  350

seq1  GCTGAGCTGCCTGACATGCAGAACCACCCAGCAGCAGCACCTTTCCACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCTGCCTGACATGCAGAACCACCCAGCAGCAGCACCTTTCCACGA  400

seq1  AGTGAAGTGCGTAAAGCTGACAGATCATGTGCTTGTCGCCATTCCCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGTGCGTAAAGCTGACAGATCATGTGCTTGTCGCCATTCCCATCT  450

seq1  GGGATCTGCGGCAAGCAGGTTCTAACAGGGTCTTTCGAGTTTTCAGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTGCGGCAAGCAGGTTCTAACAGGGTCTTTCGAGTTTTCAGCTGG  500

seq1  TTGATAGGCCACCTGCTCTTCCCCAAGTCAGCTAAGAATCACCATCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGGCCACCTGCTCTTCCCCAAGTCAGCTAAGAATCACCATCTTTA  550

seq1  GGGAACCCAAGCAGAGGACAGTGGGGCAGAGCACAACATGCACTGGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCCAAGCAGAGGACAGTGGGGCAGAGCACAACATGCACTGGGCTT  600

seq1  GGGAAGGTCCTGCTGTTGAAGCAGGTAGCAGCAGGCACCCCACAGTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGTCCTGCTGTTGAAGCAGGTAGCAGCAGGCACCCCACAGTCCCT  650

seq1  TGGAGGGGACTGGCCCTGTCAGCTTGCCAGCTCTCACAGCCCCTTTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGGACTGGCCCTGTCAGCTTGCCAGCTCTCACAGCCCCTTTCTGC  700

seq1  CTTCCTTTAGGTTCTAAACAAACACCACACATCTAGTTTTCTTCGAGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTAGGTTCTAAACAAACACCACACATCTAGTTTTCTTCGAGGCC  750

seq1  CACACCTGCAGTCACACCACAAAGGACCCCTCAGAGTCTCTCCTCAATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGCAGTCACACCACAAAGGACCCCTCAGAGTCTCTCCTCAATTG  800

seq1  CCTTTCATACATCACTGGCTGCATCTACATCCAAGGGCAAAGTAAGACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATACATCACTGGCTGCATCTACATCCAAGGGCAAAGTAAGACAC  850

seq1  CAAATCAGATGTTAGCTGAAGCAACTGGTATAGAAAACAATACAGAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGATGTTAGCTGAAGCAACTGGTATAGAAAACAATACAGAATTC  900