BAC Information

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BAC

Clone NameB6Ng01-185D09
Chromosome2 (Build37)
Map Location 34,335,624 - 34,531,837
singlet/doubletdoublet
Overlap geneMapkap1, LOC623448, LOC623269
Upstream geneLOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931, Pbx3, LOC665948
Downstream geneGapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185D09.bB6Ng01-185D09.g
ACCGA010384GA010385
length737902
definitionB6Ng01-185D09.b B6Ng01-185D09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,531,101 - 34,531,837)(34,335,624 - 34,336,519)
sequence
gaattcttgttatgagacttaacttgtaatcaacgatctctctctctctc
tctctctctctctctctctctctgtaatggtacctaaatatagtccatgt
tatcactggggaaatgaataagaagatgtggacgttgctgcatggctctt
ttctgtggaatgaaggtcatggatgtgaggggtatggctaccgcgtccga
gaaagcggtgaggtgcatcctgattttgggacagctctggacgtggggta
gatgcattctctgtccacgaggaaactccagcatccaccattgctttgca
ttaaggcgttcttttcccccatatttattttatttcttgtaatttatttt
ttgagaattggcattttgcctatatacctgactgtgcacctatctatgca
gcggccatggatctccttctagggcattagatcccctgaagctggaaaac
agaaggctgcccactgtcatgtggtttccaggactccaatctgggtcccc
tggaattgccagagttctgaaccgacgtgctgaactgtcactccagcccc
gcaatggaattcatgtggggtagatgtctcatcttatcaagtatctactt
cctcggcagttcctgcatgaaatgtaggagtgacttcattttctgatttc
ctttggaaatgtctccatatgtttccctctgccctacatgacggaactgc
cgtgtgcaactgacctgaggaaatgttcagacaccta
gaattctagtcaatctcgaaaaagagtgacttccggtctttaaagggaac
ttggaagtaattacttaatacctgaattccacatgatgacctaccatgtt
ttgagagcgcttccttgacctagcattctgcacggtcagtgggtccagct
ccctcctgagctcctgctcctgagccttggtggtgacgcctctggtgttt
gcagctggaggctgcactaagttctttgttgttccattggttcctttagg
gtaagtgaataattaagaggaacatcttttctgaacagctggagccaaat
tccacctgactacagcacctgcaaagatggcgcctcaacctctgggttgc
agggtgggatgccagccgggagtcacaaccatggacgccaaagtgcatag
acatgcctctgctgcacagctcctgtccttctgtgagcttcagatggcag
gaatatcaccgaatgcaaagtgtctgctttaaactaattagtgggatgat
ttgtgaaatggtgactatttatttaaataatcacaagcactaagccataa
aacccatattttaaaaatccctgttagtgtgccatggggttaatagattg
gagcacatcaaaaattgacattgtgatgtattaaaaacgttccacctaag
atcccttcatgaacgagcacaaactgtctgtgaaggtgctgagatgggcc
tgtctggtttgacccttctgagggtgggtgctgccagcaacatttacctt
tttgaatggcgtctggattaaaacatcgtcctcccatagcattccaaacg
aaaggaatttttgcaaacaacctcaaaaacatggatcgaactagattttg
gtagtgtcactctaaatgatgacggacctctaatttaccacaaattactt
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_34531101_34531837
seq2: B6Ng01-185D09.b_37_773 (reverse)

seq1  TAGGTGTCTGAACATTTCCCCAGGTGACTTGCACACAGCAGTACCTTCAT  50
      ||||||||||||||||||| ||||| | |||||||| ||||| || ||||
seq2  TAGGTGTCTGAACATTTCCTCAGGTCAGTTGCACACGGCAGTTCCGTCAT  50

seq1  GTAGGACAGTGGGAAACATCTGAAGACCTTTCC--AGAAAAACAAACAAG  98
      ||||| ||| ||||||||| || |||| |||||  || ||| || | || 
seq2  GTAGGGCAGAGGGAAACATATGGAGACATTTCCAAAGGAAATCAGA-AAA  99

seq1  TCAAGTCACTCC-CCATTGCATGCTGCCACTGCC-AGGAAGTAGATACTT  146
      | ||||||||||  |||| ||||| |  |||||| |||||||||||||||
seq2  TGAAGTCACTCCTACATTTCATGCAGGAACTGCCGAGGAAGTAGATACTT  149

seq1  GATAAGCTGAGACATCAACCCCACAAGAATTCCATTGTGGGGCTGGAGTG  196
      |||||| ||||||||| |||||||| ||||||||||| ||||||||||||
seq2  GATAAGATGAGACATCTACCCCACATGAATTCCATTGCGGGGCTGGAGTG  199

seq1  ACAGTTCAGCACGTCGGTTCAGAACTCTGGCTATTCCAGGGGACCCAGAT  246
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACAGTTCAGCACGTCGGTTCAGAACTCTGGCAATTCCAGGGGACCCAGAT  249

seq1  TGGAGTCCTGGTAACCACATGACAGTTTGCAGCCTTCTGTTTTCCAGTTC  296
      ||||||||||| ||||||||||||||  ||||||||||||||||||| | 
seq2  TGGAGTCCTGGAAACCACATGACAGTGGGCAGCCTTCTGTTTTCCAGCTT  299

seq1  CAGGGGATCTAATGCCCTCTTCTGGACTCCATGGCCACTGCATAGATAGC  346
      ||||||||||||||||||     |   ||||||||| |||||||||||| 
seq2  CAGGGGATCTAATGCCCTAGAAGGAGATCCATGGCCGCTGCATAGATAGG  349

seq1  TGCACAGACAGGTATATAGGCAAAATACCAATACACAAAAAATAAATTAA  396
      ||||||| |||||||||||||||||| ||||| | |||||||||||||| 
seq2  TGCACAGTCAGGTATATAGGCAAAATGCCAATTCTCAAAAAATAAATTAC  399

seq1  AATAAAATAAAATAAATATGGGGGAAAAGAATGCCTAAATGCAAAGCAAT  446
      ||  ||||||||||||||||||||||||||| |||| |||||||||||||
seq2  AA-GAAATAAAATAAATATGGGGGAAAAGAACGCCTTAATGCAAAGCAAT  448

seq1  GGTGGATGCTGGAGTTTGCTCCTGGACAGTGCTGGCATCTACCCCACGTC  496
      ||||||||||||||||| ||| ||||||| |   ||||||||||||||||
seq2  GGTGGATGCTGGAGTTTCCTCGTGGACAGAGAATGCATCTACCCCACGTC  498

seq1  CAGAGGTGTCCCAATGCCAGGCTGCACCTCACCACTTGCTTGGACACTGT  546
      ||||| ||||||||   |||| ||||||||||| ||| || |||| | ||
seq2  CAGAGCTGTCCCAAAATCAGGATGCACCTCACCGCTTTCTCGGACGCGGT  548

seq1  AGCCCTACACCTCACATCCATGACCTTCATTCCACAGAAAAGAGCCCTGC  596
      |||| ||| ||||||||||||||||||||||||||||||||||||| |||
seq2  AGCCATACCCCTCACATCCATGACCTTCATTCCACAGAAAAGAGCCATGC  598

seq1  AGCAACGTCCACATCTTCATATTTATTTCCACAGTGATAACATGGAATAT  646
      |||||||||||||||||| |||| |||||| ||||||||||||||| |||
seq2  AGCAACGTCCACATCTTCTTATTCATTTCCCCAGTGATAACATGGACTAT  648

seq1  ATTTAGCTACCATTACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  696
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTACCATTACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  698

seq1  AGATCGTTGATTTACAAGTTAAGTCTCATAACAATGAATTC  737
      |||||||||| ||||||||||||||||||||||| ||||||
seq2  AGATCGTTGA-TTACAAGTTAAGTCTCATAACAA-GAATTC  737

seq1: chr2_34335624_34336519
seq2: B6Ng01-185D09.g_67_968

seq1  GAATTCTAGTCAATCTCAAAAGAGAGTGACTTCGGGTCTTTAAAGGGAAC  50
      ||||||||||||||||| ||| ||||||||||| ||||||||||||||||
seq2  GAATTCTAGTCAATCTCGAAAAAGAGTGACTTCCGGTCTTTAAAGGGAAC  50

seq1  TTGGAAGTAATTACTTAATACCTGAATTCCAGATGATGACATAGCATGTT  100
      ||||||||||||||||||||||||||||||| |||||||| || ||||||
seq2  TTGGAAGTAATTACTTAATACCTGAATTCCACATGATGACCTACCATGTT  100

seq1  TTGAGAGCGCTTCCTTGACCTAGCAGTCTGCACGGTCAGTGGGTCCAGCT  150
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGAGAGCGCTTCCTTGACCTAGCATTCTGCACGGTCAGTGGGTCCAGCT  150

seq1  CCCTCCTGAGCTCCTGCTCCTGAGCCTTGGTGGTGACGCCTCTGGTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGAGCTCCTGCTCCTGAGCCTTGGTGGTGACGCCTCTGGTGTTT  200

seq1  GCAGCTGGAGGCTGCACTAAGTTCTTTGTTGTTCCATTGTTTCCTTTAGG  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCAGCTGGAGGCTGCACTAAGTTCTTTGTTGTTCCATTGGTTCCTTTAGG  250

seq1  GTAAGTGAATAATTAAGAGGAACATCTTTTCTGAGCAGCTGGAGCCAAAT  300
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTAAGTGAATAATTAAGAGGAACATCTTTTCTGAACAGCTGGAGCCAAAT  300

seq1  TCCAGCTGACTACAGCACCTGCAAAGATGGCGCCTCAGCCTCTGGGTTGC  350
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCCACCTGACTACAGCACCTGCAAAGATGGCGCCTCAACCTCTGGGTTGC  350

seq1  AGGGTGGGATGCCAGCCGTGAGTCACAACAATGGGCGCCAAAGTGCAGAG  400
      |||||||||||||||||| |||||||||| |||| |||||||||||| ||
seq2  AGGGTGGGATGCCAGCCGGGAGTCACAACCATGGACGCCAAAGTGCATAG  400

seq1  ACATGCCTATGCTGCACAGCTCCTGTCCTTCTGTGAGCTTCAGATGGCAG  450
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCTCTGCTGCACAGCTCCTGTCCTTCTGTGAGCTTCAGATGGCAG  450

seq1  GAATATCACCGAATGCAAAGTGTCTGCTTTAGACTAATTAGTGGGATGAT  500
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAATATCACCGAATGCAAAGTGTCTGCTTTAAACTAATTAGTGGGATGAT  500

seq1  TTGTGAAATGGTGACTATTTATTTAATTAATCACAAGCACAAAGCCATAA  550
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  TTGTGAAATGGTGACTATTTATTTAAATAATCACAAGCACTAAGCCATAA  550

seq1  AACCCATATTTTAAAAATCCCTGTTAGTTTGCCATGTGGTTAATAGATTG  600
      |||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  AACCCATATTTTAAAAATCCCTGTTAGTGTGCCATGGGGTTAATAGATTG  600

seq1  GAGCACATTAAAAAGTGACATTGTGATGTATTAAAAACGTTCCACCTAAG  650
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  GAGCACATCAAAAATTGACATTGTGATGTATTAAAAACGTTCCACCTAAG  650

seq1  ATCCCTTCAGGAAGGAGCAGAAGCTGTCTGTGTAGGTGCTGAGATGGGCC  700
      ||||||||| ||| ||||| || ||||||||| |||||||||||||||||
seq2  ATCCCTTCATGAACGAGCACAAACTGTCTGTGAAGGTGCTGAGATGGGCC  700

seq1  TGTCTGGTTTGACCCTTCTGAGGGTGGGTGCTGCCAGCAGCATTTACC-T  749
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  TGTCTGGTTTGACCCTTCTGAGGGTGGGTGCTGCCAGCAACATTTACCTT  750

seq1  TTTGAATGGCGTCTGGATTAGAATAGC-TCCTCCCAGAACATTCCAAA-G  797
      |||||||||||||||||||| || | | |||||||| | ||||||||| |
seq2  TTTGAATGGCGTCTGGATTAAAACATCGTCCTCCCATAGCATTCCAAACG  800

seq1  GAAGGAA-TTTTGTAAAGTAACTCAAAAATTAGGATTGAACTTGA-TTTG  845
       |||||| ||||| |||  | ||||||||   |||| ||||| || ||||
seq2  AAAGGAATTTTTGCAAACAACCTCAAAAACATGGATCGAACTAGATTTTG  850

seq1  GTAGTGTTTTTCTTAATGAT-AAGGACCTATAATTTTCTACAAATTACTT  894
      |||||||   ||| |||||| | |||||| |||||| | |||||||||||
seq2  GTAGTGTCACTCTAAATGATGACGGACCTCTAATTTACCACAAATTACTT  900

seq1  TG  896
      ||
seq2  TG  902