BAC Information

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BAC

Clone NameB6Ng01-191L17
Chromosome2 (Build37)
Map Location 56,181,959 - 56,306,840
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191L17.bB6Ng01-191L17.g
ACCGA015151GA015152
length1,1581,099
definitionB6Ng01-191L17.b B6Ng01-191L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,181,959 - 56,183,125)(56,305,737 - 56,306,840)
sequence
gaattctgttctcaatgagaacacaaacaagactaaactttaaggcaaat
tgcatcaaattaatgtggtcccgggtacttaatataacctttcatctctt
tgtgcatatttttcattgtaccaaggatatcagaagatagaggtctggaa
aattaccaaggttttatccacaaattgtcaggaatatactctggtaaata
cctttatataatgataaactagtgttgaaagtatctttagacatagttaa
attcagtgctgaatcttttgcctttagcagttcttgccagttcttattat
gattggattttactctgaagaaaataaaggtactcaaaaatagcataagt
tttgcaatacaaagctgtccttatatataagttcttctttctttagtcta
aaacacatctcgttccattgtgctccaaatcactctcatttgcacttaac
ttagtatatttattctacaatatcaaatttgtcccataaaataggataac
actttaaaaggtatttttgaaagatgaagtaaatgagtaccgtctaggaa
gagtcacctttatcagtattgtagtgagaatgggctaataagcaagggag
gaagctgggagcatctattcagcttatagcagtggttaagcttttaagat
tttactacttagaatatcccattgtttttacttaatttattaaatctata
ttaacacgagatagtcaaatgtgtaggctgagtgtgggatatggaagtgt
ttccactattcttatttaagtttattgctgcataagtagcagagtcaatt
aaaataatttaaatagaaacgtgctttaattttttaaataaaaatattta
aaatagtattgctatattcagaattggcaactattatttacagaaaggaa
atattttccctaagcatacatgaggtagcccatgacttcatcacactact
tcattgagtctctactcccagaagcccatgggaagatgacaaatacagga
taaagcaagcatatataagcattaaattattttgtttctcttcgatataa
agatggtatgttatataaatgtagagatgcatatgattttatttccaaat
tattaaagcattatattttgaagttatcctagagagcatctatatcatat
gaacttcc

gaattcagcacactaaagtcctatgagttcttgtcattattatgaacttt
tctaatgttagaaaataaaatattatagaattcacatttctgcttatgaa
tctaattttatttaaatactacttacagtactcattaaaatacacttagc
ttttcctacgtccaaccaataagatgtatttttaaccacttttacattta
cacatagctgtttctctgttacttttcccacatgacaattacctttcatt
acaaatttataaaatcatttacattttagcagtttaaatgtttctgctga
cattttgtaactattaccctcttctagaatggcatatgctcaggcagtta
ataaaaaattaaatggaatagcagcagccaaggtgaagctttgcatcagg
gcgctatccacatctctgaaaataccatctttgtgttgcaaactgtgaag
tgaggttagggctgtgccaatatgtgtatttgtcacaactgtcgcagaga
ccacgaactagccaatcacatagcccttaattagacagttatattttgct
ttttagaaattgtcttcatgtaaaatggtatctaagattcaagaaacgtg
ctgagagctaagagggcaaagaatgccacagattagaaaaaaaaaaaaag
aagcacgttagtttctctgaagctttattaactgctgcatgattcattta
atataaaaatatacgtcctgtgaaagatatttataaatgttaacatgaga
gaaatgtagttcatggattaatgaatttgggatacactgaattaaacatt
tctatgatactaaatgttcttatatagattttgaaattataaattaaaaa
ttacagaagatgatctttcaaaagtgaagctattaattcctgcgttcaca
gttgtgactctggcgtcatctgaaattccatttacacttattttactgct
gggaaataaattgtgtagattttgttaaaaacaataattgctttgggatt
ttttattcctgcaaacaatttgtatgaaagattagcctacattttgaaaa
aaaaaaagaatacatcctttttcatgtcaacaaagttataattcataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56181959_56183125
seq2: B6Ng01-191L17.b_49_1206

seq1  GAATTCTGTTCTCAATGAGAACACAAACAAGACTAAAC-TGAAGGCAAAT  49
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  GAATTCTGTTCTCAATGAGAACACAAACAAGACTAAACTTTAAGGCAAAT  50

seq1  TGCATCAAATTAATGTGGTCCCGGGTACTTAATATAACCTTTCATCTCTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAAATTAATGTGGTCCCGGGTACTTAATATAACCTTTCATCTCTT  100

seq1  TGTGCATATTTTTCATTGTACCAAGGATATCAGAAGATAGAGGTCTGGAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATATTTTTCATTGTACCAAGGATATCAGAAGATAGAGGTCTGGAA  150

seq1  AATTACCAAGGTTTTATCCACAAATTGTCAGGAATATACTCTGGTAAATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCAAGGTTTTATCCACAAATTGTCAGGAATATACTCTGGTAAATA  200

seq1  CCTTTATATAATGATAAACTAGTGTTGAAAGTATCTTTAGACATAGTTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATATAATGATAAACTAGTGTTGAAAGTATCTTTAGACATAGTTAA  250

seq1  ATTCAGTGCTGAATCTTTTGCCTTTAGCAGTTCTTGCCAGTTCTTATTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGCTGAATCTTTTGCCTTTAGCAGTTCTTGCCAGTTCTTATTAT  300

seq1  GATTGGATTTTACTCTGAAGAAAATAAAGGTACTCAAAAATAGCATAAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGATTTTACTCTGAAGAAAATAAAGGTACTCAAAAATAGCATAAGT  350

seq1  TTTGCAATACAAAGCTGTCCTTATATATAAGTTCTTCTTTCTTTAGTCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATACAAAGCTGTCCTTATATATAAGTTCTTCTTTCTTTAGTCTA  400

seq1  AAACACATCTCGTTCCATTGTGCTCCAAATCACTCTCATTTGCACTTAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATCTCGTTCCATTGTGCTCCAAATCACTCTCATTTGCACTTAAC  450

seq1  TTAGTATATTTATTCTACAATATCAAATTTGTCCCATAAAATAGGATAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATATTTATTCTACAATATCAAATTTGTCCCATAAAATAGGATAAC  500

seq1  ACTTTAAAAGGTATTTTTGAAAGATGAAGTAAATGAGTACCGTCTAGGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAAGGTATTTTTGAAAGATGAAGTAAATGAGTACCGTCTAGGAA  550

seq1  GAGTCACCTTTATCAGTATTGTAGTGAGAATGGGCTAATAAGCAAGGGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACCTTTATCAGTATTGTAGTGAGAATGGGCTAATAAGCAAGGGAG  600

seq1  GAAGCTGGGAGCATCTATTCAGCTTATAGCAGTGGTTAAGCTTTTAAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGGAGCATCTATTCAGCTTATAGCAGTGGTTAAGCTTTTAAGAT  650

seq1  TTTACTACTTAGAATATCCCATTGTTTTTACTTAATTTATTAAATCTATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTACTTAGAATATCCCATTGTTTTTACTTAATTTATTAAATCTATA  700

seq1  TTAACACGAGATAGTCAAATGTGTAGGCTGAGTGTGGGATATGGAAGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACGAGATAGTCAAATGTGTAGGCTGAGTGTGGGATATGGAAGTGT  750

seq1  TTCCACTATTCTTATTTAAGTTTATTGCTGCATAAGTAGCAGAGTCAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTATTCTTATTTAAGTTTATTGCTGCATAAGTAGCAGAGTCAATT  800

seq1  AAAATAATTTAAATAGAAACGTGCTTTAA-TTTTTAAATAAAAATATTTA  848
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAATAATTTAAATAGAAACGTGCTTTAATTTTTTAAATAAAAATATTTA  850

seq1  AAATAGTATTGCTATATTCAGAATTGGCAACTATTATTTACAGAAAGGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTATTGCTATATTCAGAATTGGCAACTATTATTTACAGAAAGGAA  900

seq1  AATATTTCCCTAAGCATACATGAGGTAGCCCATGACTTCATCACACTACT  948
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCCCTAAGCATACATGAGGTAGCCCATGACTTCATCACACTACT  950

seq1  TCATTGAGTCTCTACTCCCAGAAGCCCATGGGAAGATGACAAATACAGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAGTCTCTACTCCCAGAAGCCCATGGGAAGATGACAAATACAGGA  1000

seq1  TAAAGCAAGCATATATAAGCATTAAATTATTTTGTTTCTCCTCGATATTA  1048
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  TAAAGCAAGCATATATAAGCATTAAATTATTTTGTTTCTCTTCGATA-TA  1049

seq1  AAGATGGTATGTTATATAAATGTAAGAGATGCATATGAATTTTATTT-CA  1097
      ||||||||||||||||||||||| ||||||||||||| ||||||||| ||
seq2  AAGATGGTATGTTATATAAATGT-AGAGATGCATATG-ATTTTATTTCCA  1097

seq1  AATTATTAAAAAGCATTATATTTTG-AGTTATCCTAGGAAGGAAGCATCT  1146
      |||||||  |||||||||||||||| |||||||||||  ||  |||||||
seq2  AATTATT--AAAGCATTATATTTTGAAGTTATCCTAG--AG--AGCATCT  1141

seq1  ATTATTCCATATGAACATTCC  1167
      | |||  ||||||||| ||||
seq2  A-TAT--CATATGAAC-TTCC  1158


seq1: chr2_56305737_56306840
seq2: B6Ng01-191L17.g_68_1166 (reverse)

seq1  ATTATGAAATGTAATAATTTTGTTTGGAACATGAAAAAGGATGTATTTCC  50
      ||||||||   | |||| ||||||    |||||||||||||||||||  |
seq2  ATTATGAA---TTATAACTTTGTT---GACATGAAAAAGGATGTATT--C  42

seq1  TTTTTTTTTTTCAAAATGTA-GCT-ATCTATCATACAAAATTGTTTCCAG  98
      |||||||||||||||||||| ||| |||| |||||| ||||||||| |||
seq2  TTTTTTTTTTTCAAAATGTAGGCTAATCTTTCATAC-AAATTGTTTGCAG  91

seq1  GAATTAAAAAATCCAAAGCATTTATTGTTTTTAACAAAATCTACACAATT  148
      |||| |||||  |||||||| |||||||||||||||||||||||||||||
seq2  GAATAAAAAATCCCAAAGCAATTATTGTTTTTAACAAAATCTACACAATT  141

seq1  TATTT-CCAGCAGTAAA--TAGTGTAAATGGAATTTCAGATGACGCCAGA  195
      ||||| |||||||||||   ||||||||||||||||||||||||||||||
seq2  TATTTCCCAGCAGTAAAATAAGTGTAAATGGAATTTCAGATGACGCCAGA  191

seq1  GTCACAACTGTGAACGCAGGAATTAATAGCTTCACCTTTTGAAAGATCAT  245
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTCACAACTGTGAACGCAGGAATTAATAGCTTCA-CTTTTGAAAGATCAT  240

seq1  CTTCTGTAATTTTTAATTTATAATTTCAAAATCTATATAAGAACATTTAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTAATTTTTAATTTATAATTTCAAAATCTATATAAGAACATTTAG  290

seq1  TATCATAGAAATGTTTAATTCAGTGTATCCCAAATTCATTAATCCATGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAGAAATGTTTAATTCAGTGTATCCCAAATTCATTAATCCATGAA  340

seq1  CTACATTTCTCTCATGTTAACATTTATAAATATCTTTCACAGGACGTATA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTCTCTCATGTTAACATTTATAAATATCTTTCACAGGACGTATA  390

seq1  TTTTTATATTAAATGAATCATGCAGCAGTTAATAAAGCTTCAGAGAAACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATTAAATGAATCATGCAGCAGTTAATAAAGCTTCAGAGAAACT  440

seq1  AACGTGCTTCTTTTTTTTTTTTTCTAATCTGTGGCATTCTTTGCCCTCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGCTTCTTTTTTTTTTTTTCTAATCTGTGGCATTCTTTGCCCTCTT  490

seq1  AGCTCTCAGCACGTTTCTTGAATCTTAGATACCATTTTACATGAAGACAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCAGCACGTTTCTTGAATCTTAGATACCATTTTACATGAAGACAA  540

seq1  TTTCTAAAAAGCAAAATATAACTGTCTAATTAAGGGCTATGTGATTGGCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAAAGCAAAATATAACTGTCTAATTAAGGGCTATGTGATTGGCT  590

seq1  AGTTCGTGGTCTCTGCGACAGTTGTGACAAATACACATATTGGCACAGCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGTGGTCTCTGCGACAGTTGTGACAAATACACATATTGGCACAGCC  640

seq1  CTAACCTCACTTCACAGTTTGCAACACAAAGATGGTATTTTCAGAGATGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTCACTTCACAGTTTGCAACACAAAGATGGTATTTTCAGAGATGT  690

seq1  GGATAGCGCCCTGATGCAAAGCTTCACCTTGGCTGCTGCTATTCCATTTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCGCCCTGATGCAAAGCTTCACCTTGGCTGCTGCTATTCCATTTA  740

seq1  ATTTTTTATTAACTGCCTGAGCATATGCCATTCTAGAAGAGGGTAATAGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATTAACTGCCTGAGCATATGCCATTCTAGAAGAGGGTAATAGT  790

seq1  TACAAAATGTCAGCAGAAACATTTAAACTGCTAAAATGTAAATGATTTTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATGTCAGCAGAAACATTTAAACTGCTAAAATGTAAATGATTTTA  840

seq1  TAAATTTGTAATGAAAGGTAATTGTCATGTGGGAAAAGTAACAGAGAAAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGTAATGAAAGGTAATTGTCATGTGGGAAAAGTAACAGAGAAAC  890

seq1  AGCTATGTGTAAATGTAAAAGTGGTTAAAAATACATCTTATTGGTTGGAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGTGTAAATGTAAAAGTGGTTAAAAATACATCTTATTGGTTGGAC  940

seq1  GTAGGAAAAGCTAAGTGTATTTTAATGAGTACTGTAAGTAGTATTTAAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAAAGCTAAGTGTATTTTAATGAGTACTGTAAGTAGTATTTAAAT  990

seq1  AAAATTAGATTCATAAGCAGAAATGTGAATTCTATAATATTTTATTTTCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGATTCATAAGCAGAAATGTGAATTCTATAATATTTTATTTTCT  1040

seq1  AACATTAGAAAAGTTCATAATAATGACAAGAACTCATAGGACTTTAGTGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAGAAAAGTTCATAATAATGACAAGAACTCATAGGACTTTAGTGT  1090

seq1  GCTGAATTC  1104
      |||||||||
seq2  GCTGAATTC  1099


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