BAC Information

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BAC

Clone NameB6Ng01-192H11
Chromosome2 (Build37)
Map Location 43,529,066 - 43,700,636
singlet/doubletdoublet
Overlap geneKynu, Arhgap15
Upstream geneLOC100041228, LOC100041245
Downstream geneGtdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192H11.bB6Ng01-192H11.g
ACCGA015700GA015701
length1,0161,145
definitionB6Ng01-192H11.b B6Ng01-192H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,529,066 - 43,530,093)(43,699,480 - 43,700,636)
sequence
gaattcattgactaaaatgtactttaaaaattatacctctttaaacaaat
gttttacacctcctagtcaaataagatttgaatttgtttccttcatgtct
tctatcatctaattcatgttattttaggaaatattgtgcaagatttgagt
ttgaaaggggtgattagaaagaatctctcatctaaatcccaaacacagca
gttcctcattctggccactgggtggcatcatgaagttcctgtttttgtac
accttcaccaccaatagatagtgtcaactgcctttctcctagcagcctac
tttagaacgcatcgccgccgtttgaccactagatggagcatgcgccgttt
tcacatttttttggattgttttgatgaaaaatagacaaaatgagattatt
ttgcagccagggtaatactttttaaagtttttttttctttctttttttgg
aggggaagtttgttcagtattttatctaatgatatttaatagttttctaa
taatttgtgatatccataaggaaaaatgttgtgcttgattttaaaacagc
aagtatcatctcagtttgcaaggttttaacagaaaagctaagtatgaaag
cagccaagactcacgtttgggagctagggtgcaccagcatttagcccatt
tcttttgatttcccttatccatatattcagaaattgtccatgttttcccc
ctcaggactagatgacctccaactcagttgtctccacctttggagtgggt
tgatctcagtctatggggtcacgccctctcgttttagcaaactgtctgcc
ctgaagggtgccagtttcttctttatacaaccatgctgaattagagccac
acacatcaaatttccactctcagactctgaaggctgactcatatttttcc
ctttaagacctaatgtaaacttaccaaagaaccttagcagacacctgaaa
catggcactattttcgcagctcttgagtccattgtagctatcatacagtt
tgttctggcaaatgat

gaattcattcaacaacccaatctgttgatccagaaatcatgtttcccttt
ttatgttttaaagatttctagtcctaagaagacgagacatcagccacttt
tacattctgggcaacgctatagaatgcaatgtctttctttgaaaagtata
attattttaccaataagggtgtcaacaatcggaacagaagggattgttct
agttaggtctggatggccttgcttctcagacaaaagcactgacacaagcc
gaggaagtgggagaccgtgtagttatgtaacagagagttgaagaactttc
attaccttagtttctttcctccatctgcaattttggctttttgaagatac
ccttctttttcaaccatctgcaagaagaatgtgtatgttaaaatggtgac
aaactcttatgcatttcagtatgaatgaacccaagctttctaagcaagag
ccattgcaatgatggaagcttccagtcacagagctttattaataatgcat
acaagacttatgggaagtgcatacaagatcaaagtctttacaagctttac
atatcaaacgatagattaggaagatgtatgtggatggatcctttgatagt
gatacagcaccacttgctcccccttacgtgttaggaagccacttgcttaa
aacattgacatcaatgagaaaacaaagggaagtgcaaacccttcctaaat
cttaccaggaaagctcttcctttgtaccctgcccatccacctgccaagac
caggaaaaaggaaatggaccaagaagctgagcctgatgaatcatgggaaa
atatcacaatgataacattttgtgcattttggccagttagccagagacaa
agtagtgacactcttgttgtcatctgagctatataactgcttcctttgcc
tgtttgtactgttgcctttcatcctcatagagttgcaaactccagaaagg
ccaaaggaacaatttactatacacacagaaggtgtttagtaaatttccaa
ccaaaatcacacaaatgcagatgatcgtatggtgaattcccagcaaagtc
atatagtggtttcagtttgtctatttgtgcctcttgactctggtcacctt
atttcagtctggactggagctactagagtagcatgctttctcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_43529066_43530093
seq2: B6Ng01-192H11.b_31_1046

seq1  GAATTCATTGACTAAAATGTACTTTAAAAATTATACCTCTTTAAACAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGACTAAAATGTACTTTAAAAATTATACCTCTTTAAACAAAT  50

seq1  GTTTTACACCTCCTAGTCAAATAAGATTTGAATTTGTTTCCTTCATGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACACCTCCTAGTCAAATAAGATTTGAATTTGTTTCCTTCATGTCT  100

seq1  TCTATCATCTAATTCATGTTATTTTAGGAAATATTGTGCAAGATTTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCATCTAATTCATGTTATTTTAGGAAATATTGTGCAAGATTTGAGT  150

seq1  TTGAAAGGGGTGATTAGAAAGAATCTCTCATCTAAATCCCAAACACAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGGGGTGATTAGAAAGAATCTCTCATCTAAATCCCAAACACAGCA  200

seq1  GTTCCTCATTCTGGCCACTGGGTGGCATCATGAAGTTCCTGTTTTTGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCATTCTGGCCACTGGGTGGCATCATGAAGTTCCTGTTTTTGTAC  250

seq1  ACCTTCACCACCAATAGATAGTGTCAACTGCCTTTCTCCTAGCAGCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCACCACCAATAGATAGTGTCAACTGCCTTTCTCCTAGCAGCCTAC  300

seq1  TTTAGAACGCATCGCCGCCGTTTGACCACTAGATGGAGCATGCGCCGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAACGCATCGCCGCCGTTTGACCACTAGATGGAGCATGCGCCGTTT  350

seq1  TCACATTTTTTTGGATTGTTTTGATGAAAAATAGACAAAATGAGATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTTTTTGGATTGTTTTGATGAAAAATAGACAAAATGAGATTATT  400

seq1  TTGCAGCCAGGGTAATACTTTTTAAAGTTTTTTTTTCTTTCTTTTTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCCAGGGTAATACTTTTTAAAGTTTTTTTTTCTTTCTTTTTTTGG  450

seq1  AGGGGAAGTTTGTTCAGTATTTTATCTAATGATATTTAATAGTTTTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAGTTTGTTCAGTATTTTATCTAATGATATTTAATAGTTTTCTAA  500

seq1  TAATTTGTGATATCCATAAGGAAAAATGTTGTGCTTGATTTTAAAACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTGATATCCATAAGGAAAAATGTTGTGCTTGATTTTAAAACAGC  550

seq1  AAGTATCATCTCAGTTTGCAAGGTTTTAACAGAAAAGCTAAGTATGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCATCTCAGTTTGCAAGGTTTTAACAGAAAAGCTAAGTATGAAAG  600

seq1  CAGCCAAGACTCACGTTTGGGAGCTAGGGTGCACCAGCATTTAGCCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGACTCACGTTTGGGAGCTAGGGTGCACCAGCATTTAGCCCATT  650

seq1  TCTTTTGATTTCCCTTATCCATATATTCAGAAATTGTCCATGTTTTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGATTTCCCTTATCCATATATTCAGAAATTGTCCATGTTTTCCCC  700

seq1  CTCAGGACTAGATGACCTCCAACTCAGTTGTCTCCACCTTTGGAGTGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACTAGATGACCTCCAACTCAGTTGTCTCCACCTTTGGAGTGGGT  750

seq1  TGATCTCAGTCTATGGGGTCACGCCCTCTCGTTTTAGCAAACTGTCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCAGTCTATGGGGTCACGCCCTCTCGTTTTAGCAAACTGTCTGCC  800

seq1  CTGAAGGGTGCCAGTTTCTTCTTTATACAACCATGCTGAATTAGAGCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGGTGCCAGTTTCTTCTTTATACAACCATGCTGAATTAGAGCCAC  850

seq1  ACACATCAAATTTCCACTCTCAGACTCTGAAGGCTGACTCATATTTTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCAAATTTCCACTCTCAGACTCTGAAGGCTGACTCATATTTTTCC  900

seq1  CTTTAAGACCTAAATGTAAACTTACCAAAAGAACCTTAGCAGACACCTGA  950
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  CTTTAAGACCT-AATGTAAACTTACC-AAAGAACCTTAGCAGACACCTGA  948

seq1  AACATGGCACTAATTTTCGGCAGCTTCTTGAGTCCATTGTAGCTATTCAT  1000
      ||||||||||| |||||| ||||| |||||||||||||||||||| ||| 
seq2  AACATGGCACT-ATTTTC-GCAGC-TCTTGAGTCCATTGTAGCTA-TCA-  993

seq1  TACCAAGGTTTTGTTCTGGCCAAATGAT  1028
      |||  ||  |||||||||| ||||||||
seq2  TAC--AG--TTTGTTCTGG-CAAATGAT  1016


seq1: chr2_43699480_43700636
seq2: B6Ng01-192H11.g_65_1209 (reverse)

seq1  CATGAGGAAAGCATGCTACTTCTTTAAAGGTAGCTCAGGCCAAGAACTGG  50
      ||||| ||||||||||||| |||      |||||||  | | || |||| 
seq2  CATGA-GAAAGCATGCTAC-TCT-----AGTAGCTCCAGTCCAG-ACTGA  42

seq1  AATAGGGTGACCCAGAAGTCAGGAGGGCACAAATAGACAAACTGAAACCA  100
      |||| ||||| |||| ||||| || |||||||||||||||||||||||||
seq2  AATAAGGTGA-CCAG-AGTCAAGA-GGCACAAATAGACAAACTGAAACCA  89

seq1  CTATATTGACTTTGCTGGGAA-TCAACATACGATCATCTGCATTTGTGTG  149
      ||||| ||||||||||||||| ||| ||||||||||||||||||||||||
seq2  CTATA-TGACTTTGCTGGGAATTCACCATACGATCATCTGCATTTGTGTG  138

seq1  AATTTTGGTTGG-AATTTACTAAACACC-TCTGTTGTGTTATAGTAAATT  197
       ||||||||||| ||||||||||||||| |||| |||| |||||||||||
seq2  -ATTTTGGTTGGAAATTTACTAAACACCTTCTG-TGTG-TATAGTAAATT  185

seq1  GTTCC-TTGGCCTTTCTGGAGTTTGCAACTCTATGAGGATGAAAGGCAAC  246
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTGGCCTTTCTGGAGTTTGCAACTCTATGAGGATGAAAGGCAAC  235

seq1  AGTACAAACAGGCAAAGGAAAGCAGTTATATAGCTCAGATGACAACAAGA  296
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGTACAAACAGGCAAAGG-AAGCAGTTATATAGCTCAGATGACAACAAGA  284

seq1  GTGTCACTACTTTGTCTCTGGCTAACTGGCCAAAATGCACAAAATGTTAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACTACTTTGTCTCTGGCTAACTGGCCAAAATGCACAAAATGTTAT  334

seq1  CATTGTGATATTTTCCCATGATTCATCAGGCTCAGCTTCTTGGTCCATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGATATTTTCCCATGATTCATCAGGCTCAGCTTCTTGGTCCATTT  384

seq1  CCTTTTTCCTGGTCTTGGCAGGTGGATGGGCAGGGTACAAAGGAAGAGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCCTGGTCTTGGCAGGTGGATGGGCAGGGTACAAAGGAAGAGCT  434

seq1  TTCCTGGTAAGATTTAGGAAGGGTTTGCACTTCCCTTTGTTTTCTCATTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTAAGATTTAGGAAGGGTTTGCACTTCCCTTTGTTTTCTCATTG  484

seq1  ATGTCAATGTTTTAAGCAAGTGGCTTCCTAACACGTAAGGGGGAGCAAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAATGTTTTAAGCAAGTGGCTTCCTAACACGTAAGGGGGAGCAAGT  534

seq1  GGTGCTGTATCACTATCAAAGGATCCATCCACATACATCTTCCTAATCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTATCACTATCAAAGGATCCATCCACATACATCTTCCTAATCTA  584

seq1  TCGTTTGATATGTAAAGCTTGTAAAGACTTTGATCTTGTATGCACTTCCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTGATATGTAAAGCTTGTAAAGACTTTGATCTTGTATGCACTTCCC  634

seq1  ATAAGTCTTGTATGCATTATTAATAAAGCTCTGTGACTGGAAGCTTCCAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCTTGTATGCATTATTAATAAAGCTCTGTGACTGGAAGCTTCCAT  684

seq1  CATTGCAATGGCTCTTGCTTAGAAAGCTTGGGTTCATTCATACTGAAATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAATGGCTCTTGCTTAGAAAGCTTGGGTTCATTCATACTGAAATG  734

seq1  CATAAGAGTTTGTCACCATTTTAACATACACATTCTTCTTGCAGATGGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAGTTTGTCACCATTTTAACATACACATTCTTCTTGCAGATGGTT  784

seq1  GAAAAAGAAGGGTATCTTCAAAAAGCCAAAATTGCAGATGGAGGAAAGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAGGGTATCTTCAAAAAGCCAAAATTGCAGATGGAGGAAAGAA  834

seq1  ACTAAGGTAATGAAAGTTCTTCAACTCTCTGTTACATAACTACACGGTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGTAATGAAAGTTCTTCAACTCTCTGTTACATAACTACACGGTCT  884

seq1  CCCACTTCCTCGGCTTGTGTCAGTGCTTTTGTCTGAGAAGCAAGGCCATC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCCTCGGCTTGTGTCAGTGCTTTTGTCTGAGAAGCAAGGCCATC  934

seq1  CAGACCTAACTAGAACAATCCCTTCTGTTCCGATTGTTGACACCCTTATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTAACTAGAACAATCCCTTCTGTTCCGATTGTTGACACCCTTATT  984

seq1  GGTAAAATAATTATACTTTTCAAAGAAAGACATTGCATTCTATAGCGTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAATAATTATACTTTTCAAAGAAAGACATTGCATTCTATAGCGTTG  1034

seq1  CCCAGAATGTAAAAGTGGCTGATGTCTCGTCTTCTTAGGACTAGAAATCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAATGTAAAAGTGGCTGATGTCTCGTCTTCTTAGGACTAGAAATCT  1084

seq1  TTAAAACATAAAAAGGGAAACATGATTTCTGGATCAACAGATTGGGTTGT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACATAAAAAGGGAAACATGATTTCTGGATCAACAGATTGGGTTGT  1134

seq1  TGAATGAATTC  1157
      |||||||||||
seq2  TGAATGAATTC  1145


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