BAC Information

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BAC

Clone NameB6Ng01-192H13
Chromosome2 (Build37)
Map Location 55,385,210 - 55,535,984
singlet/doubletdoublet
Overlap geneKcnj3
Upstream geneGalnt13, LOC666936
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192H13.bB6Ng01-192H13.g
ACCGA015704GA015705
length1,1691,141
definitionB6Ng01-192H13.b B6Ng01-192H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,385,210 - 55,386,401)(55,534,824 - 55,535,984)
sequence
gaattcattgaagaaagccaccatagaaatcttatgacgggttgagtttt
agatcaggtctgacattgcattagtcagcaagcaaataagagtgcctgtc
ctcatgtggccttttgggaggcgaggaacaagcaggagtgggtggttggt
cttttaactgctgtcatatttctagttctgagagcatgccttcctaatct
tggatacgtacaaagcaattttcagatgttctgagaggaagttaccccag
tctctccctgctcctgtttctttcctctagtgtgttgaaatggcaaggtc
ttgcctattcctttatctatttcagatcaagcatctataaaacaggcatt
tctaaacaggtacagaatcaatgacacaggtctgatcgtcctcttagcct
aagtgcaaaggcgtgctcactccttcttgagattctctcttggtaccata
tacgtgctgtgcatattgaagccagacaagctgtgcatatatgtgctgtg
catatacgtgctgtgcacatgctacttcattggtgcctagccctcaggag
tttctctgaataattttctcctggcagaatgaacacacatatgttgatgt
ttctgccttctaaccgtgaggttctggattttctttcagactctgtgaac
ctgttaactataataccaaaaataccctctcccatttccctgtggccccc
tcctctttttctctggctatatttgtttagaaaaatccatttttttaaaa
aatcaagattcatggagaagagagatgtggcaataggaaaaggctgtggc
aacagaaaagtgctgtgattgtttatttttctctgtctcagttaattgtg
tttaaaatgaataagtagaataacttaacaatattcacttagtcttctgt
gctatataaccatatatcagcctctgtagggaacagttatctgaacaaag
ttacctgtcatgattataaataaggcagcgcagaggcagaaaatatagca
gaaaatttttacatagatctcacatgatctcagagtgactgaaacttgtt
tctaaagcattatttatttgattgaaactggagctatcttatgacattgt
tacaggccttctaatgcagctttgtgaatgacaacagtcacggctgcttc
cattagattttgaacatgt
gaattctttccaaaattgcactatgaaagttcttcccctggggatgtcaa
ttagatttgaaaaaaaaaaatcattctggcttttaacactctgatagttc
ttcacttattttttctccataagcttatgccactacattaaaggggaaca
atccacttgtgtgctttaaatttctacataagtgttttgtcttgtgtttt
ttttttttttaacagtcaatgccaattttaattgctgacacatttaatta
cccaattctgttatgattaagtctttacttgccggctttaagatagaacc
cctcagtgttaaaagtaaagtcttgatgtgtgtcctgatgatgctcagtt
aactctgataataatcagacttctgaggtctgcttcgttactgtttgtgt
gttaccaggataaagttatcttgactgtctttctttgtcttgttagattt
tgtagcagttttcaaatgaacaaaccactggtgtccattatattttggaa
tatcattctttgctctttcataatgtgataagcagaaagcgacccctgat
aaaagataatgatgacacagaaggaatttagggattgactttgatatttt
ctttatacaacatccatgatgccaggttggggagggagggcaaatatcaa
gtttgtcttctctgtcgtgagtggttgttgattggttttagaatgtataa
taaaatatttaaaggaaaaataagatacaatggtaacaaaacacaaataa
ataaaactcaaagaatttaatagtcatgtttaagtaaacttttaaacttt
ttaaaagcatctaggtaaatttcccaagctctatctctcagcactattgc
actaacgaatgtatacacacacacacacacacacataaacatacaccacc
accatattctgcaccactaccaccaccaccacaacacacacacaacaaca
aatatttctacaagtattttgaaatcgcatccagatacgtctgcatacta
tatactaatctgtacctcacagacctgtgtgcttgtggcaagctcctctc
agatctaggattcttcatttccttgcattactgtaaatagaacaagtaat
tattaggctatcaaggtatccgagatgagcgacaatctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_55385210_55386401
seq2: B6Ng01-192H13.b_43_1211

seq1  GAATTCATTGAAGAAAGCCACCATAGAAATCTTATGACGGGTTGAGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAAGAAAGCCACCATAGAAATCTTATGACGGGTTGAGTTTT  50

seq1  AGATCAGGTCTGACATTGCATTAGTCAGCAAGCAAATAAGAGTGCCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGGTCTGACATTGCATTAGTCAGCAAGCAAATAAGAGTGCCTGTC  100

seq1  CTCATGTGGCCTTTTGGGAGGCGAGGAACAAGCAGGAGTGGGTGGTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTGGCCTTTTGGGAGGCGAGGAACAAGCAGGAGTGGGTGGTTGGT  150

seq1  CTTTTAACTGCTGTCATATTTCTAGTTCTGAGAGCATGCCTTCCTAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAACTGCTGTCATATTTCTAGTTCTGAGAGCATGCCTTCCTAATCT  200

seq1  TGGATACGTACAAAGCAATTTTCAGATGTTCTGAGAGGAAGTTACCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACGTACAAAGCAATTTTCAGATGTTCTGAGAGGAAGTTACCCCAG  250

seq1  TCTCTCCCTGCTCCTGTTTCTTTCCTCTAGTGTGTTGAAATGGCAAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTGCTCCTGTTTCTTTCCTCTAGTGTGTTGAAATGGCAAGGTC  300

seq1  TTGCCTATTCCTTTATCTATTTCAGATCAAGCATCTATAAAACAGGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTATTCCTTTATCTATTTCAGATCAAGCATCTATAAAACAGGCATT  350

seq1  TCTAAACAGGTACAGAATCAATGACACAGGTCTGATCGTCCTCTTAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACAGGTACAGAATCAATGACACAGGTCTGATCGTCCTCTTAGCCT  400

seq1  AAGTGCAAAGGCGTGCTCACTCCTTCTTGAGATTCTCTCTTGGTACCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAAAGGCGTGCTCACTCCTTCTTGAGATTCTCTCTTGGTACCATA  450

seq1  TACGTGCTGTGCATATTGAAGCCAGACAAGCTGTGCATATATGTGCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGCTGTGCATATTGAAGCCAGACAAGCTGTGCATATATGTGCTGTG  500

seq1  CATATACGTGCTGTGCACATGCTACTTCATTGGTGCCTAGCCCTCAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACGTGCTGTGCACATGCTACTTCATTGGTGCCTAGCCCTCAGGAG  550

seq1  TTTCTCTGAATAATTTTCTCCTGGCAGAATGAACACACATATGTTGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGAATAATTTTCTCCTGGCAGAATGAACACACATATGTTGATGT  600

seq1  TTCTGCCTTCTAACCGTGAGGTTCTGGATTTTCTTTCAGACTCTGTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTTCTAACCGTGAGGTTCTGGATTTTCTTTCAGACTCTGTGAAC  650

seq1  CTGTTAACTATAATACCAAAAATACCCTCTCCCATTTCCCTGTGGCCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAACTATAATACCAAAAATACCCTCTCCCATTTCCCTGTGGCCCCC  700

seq1  TCCTCTTTTTCTCTGGCTATATTTGTTTAGAAAAATCCATTTTTTTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTTTCTCTGGCTATATTTGTTTAGAAAAATCCATTTTTTTAAAA  750

seq1  AATCAAGATTCATGGAGAAGAGAGATGTGGCAATAGGAAAAGGCTGTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGATTCATGGAGAAGAGAGATGTGGCAATAGGAAAAGGCTGTGGC  800

seq1  AACAGAAAAGTGCTGTGATTGTTTATTTTTCTCTGTCTCAGTTAATTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAAGTGCTGTGATTGTTTATTTTTCTCTGTCTCAGTTAATTGTG  850

seq1  TTTAAAATGAATAAGTAGAATAACTTAACAATATTCACTTAGTCTTCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGAATAAGTAGAATAACTTAACAATATTCACTTAGTCTTCTGT  900

seq1  GCTATATAACCATATATCAGCCTCTGTAGGGAACAGTTATCTGAACAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATAACCATATATCAGCCTCTGTAGGGAACAGTTATCTGAACAAAG  950

seq1  TTACCTGTCATGATTATAAATAA-GCAGCGCAGAGGCAGAAAAATTATAG  999
      ||||||||||||||||||||||| |||||||||||||||||||  |||||
seq2  TTACCTGTCATGATTATAAATAAGGCAGCGCAGAGGCAGAAAA--TATAG  998

seq1  CAGAAAATTTTTACCATAGATCTCCACCATGAATCTCCAGAAGTGAACTG  1049
      ||||||||||||| ||||||||||   |||| |||| ||| |||| ||||
seq2  CAGAAAATTTTTA-CATAGATCTC--ACATG-ATCT-CAG-AGTG-ACTG  1041

seq1  AAAACTTGTTTTCTAAAGCATTATTTATTTGAATTGAAACTGGAGCTATC  1099
       ||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  -AAACTTG-TTTCTAAAGCATTATTTATTTG-ATTGAAACTGGAGCTATC  1088

seq1  TTAAATGACA-TGTTACAAAGGCTTCTTAAAATGCAGTTTTGTGGAAATG  1148
      ||  |||||| ||||||  ||||  |||  ||||||| ||||||  ||||
seq2  TT--ATGACATTGTTAC--AGGC--CTTCTAATGCAGCTTTGTG--AATG  1130

seq1  ACAAACAGTCAACAGGCTGCTTCCATTAAGGATATGGAACATGT  1192
      || ||||||||   ||||||||||||||  ||| | ||||||||
seq2  AC-AACAGTCA--CGGCTGCTTCCATTA--GATTTTGAACATGT  1169

seq1: chr2_55534824_55535984
seq2: B6Ng01-192H13.g_63_1203 (reverse)

seq1  AGCAGTATTGTCCTCTCATCTTCTGAATACTTGATAGCTATATTATTACT  50
      ||||| ||||| | |||||| || ||   |||||||||   || ||||||
seq2  AGCAG-ATTGT-CGCTCATC-TCGGATACCTTGATAGCCTAATAATTACT  47

seq1  TTGTTTCTATTTTACATGTATTCCAAGGAAATGGAAAGAAT-CTAGAAAT  99
      |   ||||| |||||| ||| | ||||||||||  |||||| ||||  ||
seq2  T--GTTCTA-TTTACA-GTAATGCAAGGAAATG--AAGAATCCTAG--AT  89

seq1  CTGAGAGGAGCTTTTGCCAC-AGCACACAGGTTCTGTTGAGGTACAGATT  148
      |||||||||||  ||||||| |||||||||| |||| |||||||||||||
seq2  CTGAGAGGAGC--TTGCCACAAGCACACAGG-TCTG-TGAGGTACAGATT  135

seq1  AGTATATAGTATGCAGACGTATCCTTGGATGCGATTTTCAAATACCTTGT  198
      |||||||||||||||||||||||  ||||||||||||  ||||| |||||
seq2  AGTATATAGTATGCAGACGTATC--TGGATGCGATTTCAAAATA-CTTGT  182

seq1  AGAATATTTTGTTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGTAGTG  248
      ||||   ||||||||||    |||   |||| ||||||||||||||||||
seq2  AGAAATATTTGTTGTTG----TGTGTGTGTT-GTGGTGGTGGTGGTAGTG  227

seq1  GTGGCAG-ATATGGTGGTGGTGTATGTTTATGTGTGTGTGTGTGTGTGTG  297
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GT-GCAGAATATGGTGGTGGTGTATGTTTATGTGTGTGTGTGTGTGTGTG  276

seq1  TATACATTCGTTAGTGCAATAGTGCTGAGAGATAGAGCTT-GGAAATTTA  346
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATACATTCGTTAGTGCAATAGTGCTGAGAGATAGAGCTTGGGAAATTTA  326

seq1  CCTAGATGCTTTTAAAAAGTTTAAAAGTTTACTTAAACATGACTATTAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATGCTTTTAAAAAGTTTAAAAGTTTACTTAAACATGACTATTAAA  376

seq1  TTCTTTGAGTTTTATTTATTTGTGTTTTGTTACCATTGTATCTTATTTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGAGTTTTATTTATTTGTGTTTTGTTACCATTGTATCTTATTTTT  426

seq1  CCTTTAAATATTTTATTATACATTCTAAAACCAATCAACAACCACTCACG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAATATTTTATTATACATTCTAAAACCAATCAACAACCACTCACG  476

seq1  ACAGAGAAGACAAACTTGATATTTGCCCTCCCTCCCCAACCTGGCATCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAGACAAACTTGATATTTGCCCTCCCTCCCCAACCTGGCATCAT  526

seq1  GGATGTTGTATAAAGAAAATATCAAAGTCAATCCCTAAATTCCTTCTGTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTGTATAAAGAAAATATCAAAGTCAATCCCTAAATTCCTTCTGTG  576

seq1  TCATCATTATCTTTTATCAGGGGTCGCTTTCTGCTTATCACATTATGAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTATCTTTTATCAGGGGTCGCTTTCTGCTTATCACATTATGAAA  626

seq1  GAGCAAAGAATGATATTCCAAAATATAATGGACACCAGTGGTTTGTTCAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAGAATGATATTCCAAAATATAATGGACACCAGTGGTTTGTTCAT  676

seq1  TTGAAAACTGCTACAAAATCTAACAAGACAAAGAAAGACAGTCAAGATAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACTGCTACAAAATCTAACAAGACAAAGAAAGACAGTCAAGATAA  726

seq1  CTTTATCCTGGTAACACACAAACAGTAACGAAGCAGACCTCAGAAGTCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCCTGGTAACACACAAACAGTAACGAAGCAGACCTCAGAAGTCTG  776

seq1  ATTATTATCAGAGTTAACTGAGCATCATCAGGACACACATCAAGACTTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATCAGAGTTAACTGAGCATCATCAGGACACACATCAAGACTTTA  826

seq1  CTTTTAACACTGAGGGGTTCTATCTTAAAGCCGGCAAGTAAAGACTTAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAACACTGAGGGGTTCTATCTTAAAGCCGGCAAGTAAAGACTTAAT  876

seq1  CATAACAGAATTGGGTAATTAAATGTGTCAGCAATTAAAATTGGCATTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAGAATTGGGTAATTAAATGTGTCAGCAATTAAAATTGGCATTGA  926

seq1  CTGTTAAAAAAAAAAAAAACACAAGACAAAACACTTATGTAGAAATTTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAAAAAAAAAAAAACACAAGACAAAACACTTATGTAGAAATTTAA  976

seq1  AGCACACAAGTGGATTGTTCCCCTTTAATGTAGTGGCATAAGCTTATGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACAAGTGGATTGTTCCCCTTTAATGTAGTGGCATAAGCTTATGGA  1026

seq1  GAAAAAATAAGTGAAGAACTATCAGAGTGTTAAAAGCCAGAATGATTTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATAAGTGAAGAACTATCAGAGTGTTAAAAGCCAGAATGATTTTT  1076

seq1  TTTTTTCAAATCTAATTGACATCCCCAGGGGAAGAACTTTCATAGTGCAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAAATCTAATTGACATCCCCAGGGGAAGAACTTTCATAGTGCAA  1126

seq1  TTTTGGAAAGAATTC  1161
      |||||||||||||||
seq2  TTTTGGAAAGAATTC  1141