BAC Information

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BAC

Clone NameB6Ng01-193L12
Chromosome2 (Build37)
Map Location 40,152,648 - 40,261,774
singlet/doubletdoublet
Overlap genenone
Upstream genePpia-ps2_560.1, LOC100042604, Magmas-ps
Downstream geneLOC666531, Lrp1b, LOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193L12.bB6Ng01-193L12.g
ACCGA016609GA016610
length1,1431,099
definitionB6Ng01-193L12.b B6Ng01-193L12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,260,625 - 40,261,774)(40,152,648 - 40,153,717)
sequence
gaattctgatgagagtccatttcttcatatctaagaaaattaagaataca
caatactaacaaaaatatttggaagagccctgtttactggtgaaaatgca
aattaacccattcataaataatcctactctatgatataataattcctatt
ttagttacattatatctctaatatggttccaaattcaaaatgagacaaaa
gattccacaaataaagatcagatgctgcctttgcatgcaaacacacaggg
gatgctaactaaaatcataaagaattcactttagaaatgtactaagccta
agaagcattttgctcatttgcagggatgatttggttttaatgatctagta
aagcaattcatcatgttattagattaaaaaagggaaaacaactgcataag
agaaaaaattactgaaaatttttaatgaaaacctatgacaaaatttaaat
gaacagaaggtccttcaatcaacaatatatatacatatatacatatgact
aatatgtccacacaaaacatggaacattggacttgacaatgaaatatttt
ctctatttccattaaagtcatgggcaagaaaacatgtttatttcttcatt
gttcatctatattttgcagaagatttggcaaatcagataagtaagaaaca
aaaagagtaatattaaaaaataatattatatgtaaaattaggtcacaaat
taaatacaaagaaatagtgtaagcaataataaccaatgaaagatcgtgtg
gaataaactatgaaataaactgagaagcaatgacagacttaatcaatgtt
aaaagtaaacaggtttaacatatttttcattgtgctatccaaagtggtta
aacctgaaatgatacacatacaaataagaaaattaactcagcatgctttt
tatatattttgtcagatgcctacatatatgtaacagtaataataaatgat
attggaggacatagataatggaagtagagaacattaatgggttgcaacag
ggaagggaaaggagagtgattattttaaatgtactaaaaaataataaata
ccttaagtgttggattacactatgttatttgaggaatggaagcctattat
atgtcgaatgtgtatgtatggtattgttaccataaatactaaa

gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatagaaacacacagataatgaacctggagtagtcaaaatgaaggaact
gctagagttattactagccctgagtttaagttatgctaaggaactatagc
aataaaaccagcatggtattgacataaaaacacatgtattgatcaatgaa
atagcactgaagacttatcacctgaactttgctaaactaccctgcatctt
atggttgaaataattcatcttggtataacatttgtatatttttaatacaa
atatattatcaaatccatcaatcattaaaataacagcattatatacttat
gttattattgaagttttgttttaatatataaatattattacaattattcc
tattgtaattcctttttatctgtctactacgagaaacaaaaacaaatatt
gtaaagaattgtcagtttttccagcatgatttagtatgtaccatcatttg
aaagggaagtacctgttctatcatctgaaacagtcaatatactctcttat
caatcagtctttcaatgctttgcatttcagtcacgtgttttcatgttcct
ccacaataaactgaatatgggggtttgtgtagtcacaagggactcttcca
gttcttgattttactgacttgaaatgccaccctaaacctcatttctattt
ttgccttctgtccccccttttcttttttcttttatcctccccctcctctt
ccttctcttcttctcctttgttttgttttggtatttgtttgtttgttatt
ttatcttttttttcccagatcgggtgtgtcttgttgtagcactgggctgt
tctagaattttctctctggagactaggctgccctagttattcagatggaa
ttgattctagacgttccccactttcttttctttgctttggggatgaaata
taagaaaattatgccctttaattgcaatcagagagcttttcctgtgtaag
ttatcaggacaagttacctcctctcttgagagtcatttttcccttttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_40260625_40261774
seq2: B6Ng01-193L12.b_44_1186 (reverse)

seq1  TTTAGTATTTATGGTAACATTACAATACATTACACATGTCGACCATAT-A  49
      ||||||||||||||||||| ||| ||||| ||||||| |||| ||||| |
seq2  TTTAGTATTTATGGTAACAATACCATACA-TACACAT-TCGA-CATATAA  47

seq1  TAGCTTTCCATTTCCTCCAAAATACATAGTGGTAATCCAAACACTTAAAG  99
      |||  ||||| ||||| ||||  ||||||| ||||||| ||||||||| |
seq2  TAGGCTTCCA-TTCCT-CAAATAACATAGT-GTAATCC-AACACTTAAGG  93

seq1  TATTTATTA-TTTTTAGTACATTTAAAATAATCACTTCTCC-TTCCCTTC  147
      ||||||||| ||||||||||||||||||||||||| ||||| ||||||||
seq2  TATTTATTATTTTTTAGTACATTTAAAATAATCAC-TCTCCTTTCCCTTC  142

seq1  CCTGTTTGCAACCCATTTAATGTTCTCTACTTCCATTATCTATGTCCTCC  197
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCTG-TTGCAACCCA-TTAATGTTCTCTACTTCCATTATCTATGTCCTCC  190

seq1  AATATCATTTATTATTACTGTTACATATATGTAGGCATCTGACAAAATAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATTTATTATTACTGTTACATATATGTAGGCATCTGACAAAATAT  240

seq1  ATAAAAAGCATGCTGAGTTAATTTTCTTATTTGTATGTGTATCATTTCAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGCATGCTGAGTTAATTTTCTTATTTGTATGTGTATCATTTCAG  290

seq1  GTTTAACCACTTTGGATAGCACAATGAAAAATATGTTAAACCTGTTTACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACCACTTTGGATAGCACAATGAAAAATATGTTAAACCTGTTTACT  340

seq1  TTTAACATTGATTAAGTCTGTCATTGCTTCTCAGTTTATTTCATAGTTTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATTGATTAAGTCTGTCATTGCTTCTCAGTTTATTTCATAGTTTA  390

seq1  TTCCACACGATCTTTCATTGGTTATTATTGCTTACACTATTTCTTTGTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACACGATCTTTCATTGGTTATTATTGCTTACACTATTTCTTTGTAT  440

seq1  TTAATTTGTGACCTAATTTTACATATAATATTATTTTTTAATATTACTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGTGACCTAATTTTACATATAATATTATTTTTTAATATTACTCT  490

seq1  TTTTGTTTCTTACTTATCTGATTTGCCAAATCTTCTGCAAAATATAGATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTCTTACTTATCTGATTTGCCAAATCTTCTGCAAAATATAGATG  540

seq1  AACAATGAAGAAATAAACATGTTTTCTTGCCCATGACTTTAATGGAAATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGAAGAAATAAACATGTTTTCTTGCCCATGACTTTAATGGAAATA  590

seq1  GAGAAAATATTTCATTGTCAAGTCCAATGTTCCATGTTTTGTGTGGACAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATATTTCATTGTCAAGTCCAATGTTCCATGTTTTGTGTGGACAT  640

seq1  ATTAGTCATATGTATATATGTATATATATTGTTGATTGAAGGACCTTCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCATATGTATATATGTATATATATTGTTGATTGAAGGACCTTCTG  690

seq1  TTCATTTAAATTTTGTCATAGGTTTTCATTAAAAATTTTCAGTAATTTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAAATTTTGTCATAGGTTTTCATTAAAAATTTTCAGTAATTTTT  740

seq1  TCTCTTATGCAGTTGTTTTCCCTTTTTTAATCTAATAACATGATGAATTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATGCAGTTGTTTTCCCTTTTTTAATCTAATAACATGATGAATTG  790

seq1  CTTTACTAGATCATTAAAACCAAATCATCCCTGCAAATGAGCAAAATGCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTAGATCATTAAAACCAAATCATCCCTGCAAATGAGCAAAATGCT  840

seq1  TCTTAGGCTTAGTACATTTCTAAAGTGAATTCTTTATGATTTTAGTTAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGCTTAGTACATTTCTAAAGTGAATTCTTTATGATTTTAGTTAGC  890

seq1  ATCCCCTGTGTGTTTGCATGCAAAGGCAGCATCTGATCTTTATTTGTGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTGTGTGTTTGCATGCAAAGGCAGCATCTGATCTTTATTTGTGGA  940

seq1  ATCTTTTGTCTCATTTTGAATTTGGAACCATATTAGAGATATAATGTAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGTCTCATTTTGAATTTGGAACCATATTAGAGATATAATGTAAC  990

seq1  TAAAATAGGAATTATTATATCATAGAGTAGGATTATTTATGAATGGGTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGGAATTATTATATCATAGAGTAGGATTATTTATGAATGGGTTA  1040

seq1  ATTTGCATTTTCACCAGTAAACAGGGCTCTTCCAAATATTTTTGTTAGTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATTTTCACCAGTAAACAGGGCTCTTCCAAATATTTTTGTTAGTA  1090

seq1  TTGTGTATTCTTAATTTTCTTAGATATGAAGAAATGGACTCTCATCAGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATTCTTAATTTTCTTAGATATGAAGAAATGGACTCTCATCAGAA  1140

seq1  TTC  1150
      |||
seq2  TTC  1143


seq1: chr2_40152648_40153717
seq2: B6Ng01-193L12.g_63_1161

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100

seq1  CTATAGAAACACACAGATAATGAACCTGGAGTAGTCAAAATGAAGGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAAACACACAGATAATGAACCTGGAGTAGTCAAAATGAAGGAACT  150

seq1  GCTAGAGTTATTACTAGCCCTGAGTTTAAGTTATGCTAAGGAACTATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGTTATTACTAGCCCTGAGTTTAAGTTATGCTAAGGAACTATAGC  200

seq1  AATAAAACCAGCATGGTATTGACATAAAAACACATGTATTGATCAATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACCAGCATGGTATTGACATAAAAACACATGTATTGATCAATGAA  250

seq1  ATAGCACTGAAGACTTATCACCTGAACTTTGCTAAACTACCCTGCATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACTGAAGACTTATCACCTGAACTTTGCTAAACTACCCTGCATCTT  300

seq1  ATGGTTGAAATAATTCATCTTGGTATAACATTTGTATATTTTTAATACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGAAATAATTCATCTTGGTATAACATTTGTATATTTTTAATACAA  350

seq1  ATATATTATCAAATCCATCAATCATTAAAATAACAGCATTATATACTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATCAAATCCATCAATCATTAAAATAACAGCATTATATACTTAT  400

seq1  GTTATTATTGAAGTTTTGTTTTAATATATAAATATTATTACAATTATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTATTGAAGTTTTGTTTTAATATATAAATATTATTACAATTATTCC  450

seq1  TATTGTAATTCCTTTTTATCTGTCTACTACGAGAAACAAAAACAAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAATTCCTTTTTATCTGTCTACTACGAGAAACAAAAACAAATATT  500

seq1  GTAAAGAATTGTCAGTTTTTCCAGCATGATTTAGTATGTACCATCATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAATTGTCAGTTTTTCCAGCATGATTTAGTATGTACCATCATTTG  550

seq1  AAAGGGAAGTACCTGTTCTATCATCTGAAACAGTCAATATACTCTCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAGTACCTGTTCTATCATCTGAAACAGTCAATATACTCTCTTAT  600

seq1  CAATCAGTCTTTCAATGCTTTGCATTTCAGTCACGTGTTTTCATGTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGTCTTTCAATGCTTTGCATTTCAGTCACGTGTTTTCATGTTCCT  650

seq1  CCACAATAAACTGAATATGGGGGTTTGTGTAGTCACAAGGGACTCTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATAAACTGAATATGGGGGTTTGTGTAGTCACAAGGGACTCTTCCA  700

seq1  GTTCTTGATTTTACTGACTTGAAATGCCACCCTAAACCTCATTTCTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGATTTTACTGACTTGAAATGCCACCCTAAACCTCATTTCTATTT  750

seq1  TTGCCTTCTGTCCCCCCTTTTCTTTTTTCTTTTATCCTCCCCCTCCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTCTGTCCCCCCTTTTCTTTTTTCTTTTATCCTCCCCCTCCTCTT  800

seq1  CCTTCTCTTCTTCTCCTTTGTTTTGTTTTGGTATTTGTTTGTTTGTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTTCTTCTCCTTTGTTTTGTTTTGGTATTTGTTTGTTTGTTATT  850

seq1  TTATC-TTTTTTTCCCAGATCGGGTGTGTCT--GTGTAGCACT-GGCTGT  896
      ||||| |||||||||||||||||||||||||   ||||||||| ||||||
seq2  TTATCTTTTTTTTCCCAGATCGGGTGTGTCTTGTTGTAGCACTGGGCTGT  900

seq1  TCTAGAATTTTCTCTCTGGAGACTAGGCTGCCCTAG-TATTCAGATGGAA  945
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTAGAATTTTCTCTCTGGAGACTAGGCTGCCCTAGTTATTCAGATGGAA  950

seq1  -TGA-TCTAGACG-TCCCCACTT--CTTTCTTTGCTT--GGGATGAAAT-  987
       ||| |||||||| |||||||||   |||||||||||  |||||||||| 
seq2  TTGATTCTAGACGTTCCCCACTTTCTTTTCTTTGCTTTGGGGATGAAATA  1000

seq1  --AGAAA--TATG-CCTTTTATTGCCATCAGAG---TTTTCCTGTGTA--  1027
        |||||  |||| ||||| ||||| |||||||   ||||||||||||  
seq2  TAAGAAAATTATGCCCTTTAATTGCAATCAGAGAGCTTTTCCTGTGTAAG  1050

seq1  GTATCA-GACAAGTCA-CTTCTCTCT---GAGTCATTTTT-CCTTTTCT  1070
       ||||| ||||||| | || ||||||   ||||||||||| ||||||||
seq2  TTATCAGGACAAGTTACCTCCTCTCTTGAGAGTCATTTTTCCCTTTTCT  1099


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