BAC Information

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BAC

Clone NameB6Ng01-194M09
Chromosome2 (Build37)
Map Location 39,989,545 - 39,990,655
singlet/doubletsinglet
Overlap genenone
Upstream geneA930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1, LOC100042604
Downstream geneMagmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194M09.bB6Ng01-194M09.g
ACCGA017376GA017377
length1,109907
definitionB6Ng01-194M09.b B6Ng01-194M09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatccctgttgagtatataagtaaagtagaaatatgcagaaaaca
gatgagtctttcactttgattttgaaaatacactttgaattccaagaatc
tttgatgaataaaaggctctacagtatctcctattggctggatgtgtatc
catcctgttagaacaggatagatggcagcactgttaaaataaatatggag
actgacctctttagaaacggattgttcttaatcagaacagtgaagagcag
cagtctctctagaggagtgtagacttaacacaaattgtgtagaagggatc
agggctttatagagtgaaaagattccatctgtagttcagtttccctgcag
tctcaaagtgataaatagcaacagatcttggtaagatgatcacatcacaa
gtttccaggatcttcttctcccccaggagattaacagtgaagtcaatttt
tctgtacagagtttctcagctcacctgaggctttcatgtcacctcctatt
aaccttttacctcctatcatatattcatatgttgaaacactgaccttata
ggatcctttttttttctttttcttttttaaggaggcatcatgattatgtg
aggaaagatcttgtaattgggattaatgaactgtaagtatccctacaggt
ataatccaagaaagtgagccttgcaaagagatgaaattgaaaaccttgtg
cagatttattttatccacctggatcatactttggtgagtccaataccaga
cagttaattgttagcatatttaaaacacagtacaatttgtgaaaaagttt
tcaggcaacaataagtaaagtcagtccaatatcaggtacacattaaagct
taagatgtgactgactatattacaaagatggttctatagctaaaacatct
aaaatctaatgtagtctctgattaatagcattgagatcagcagtcataaa
gtacatgttgatatcttccctaagaaatggctaacagggattgcagagat
agctcagcagttaaaacactggctgctcttttgaggtctctcagattctg
gaaagaatgcaggtattttattttgttttattgaaggacacaaacccggt
ttatgatta

gaattcttttcaggatgttctgtgtacctacaccttgaattgtttcatgt
tttggaatttttattgttttgtttagttttgtattttgtggttgttgttg
ttttggtatttgttcattgttttgttctattttgagtaggtttagagttt
taagctttatgtataagtctttgatccattttgaattaagttttgtgcaa
ggtaagaaacaatgatcttgttttattctcttatatgtgaactcacaagt
tttccatttccttagtagaaaaaggctttatttttcgcaatcttttttgg
tatgtttgtcaaaagtcaatattctggtgtctgtaactaagtgggttgct
tgagtcctcaaatatctattagcatatgggttattttcctgaagtttaat
gttttattactatgaatctgtgctctgatacttctcacaaggagggaatg
aggtatgtatgttccatttagagctaaacatttttcagtttcttattctc
tgcactttgactaggtatgggtctttgagtaaatcgccatctaccaataa
taaaaacttctgtgatgaaggctgggagatgtactaaagtttgagtataa
aattaaaattaaactgaaagccataatataaaatcttcagaataagtgta
gaccccatgcaggccccatgcattactgcttcactctctatgaattgata
tgagcttcattcataattgattttagaggggccttgtaatcagtgtcctc
catagactctggttcttttcattcttttacacccctcttcccacgcaata
ttgtgcagtctgagggaagaaatttgaataaagacataccatttgggggc
cttaaggatcccaaagtccccttactctgaatatgtaatggtggggggtc
actatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_39989545_39990655
seq2: B6Ng01-194M09.b_41_1149

seq1  GAATTCATCCCTGTTGAGTATATAAGTAAAGTAGAAATATGCAGAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCTGTTGAGTATATAAGTAAAGTAGAAATATGCAGAAAACA  50

seq1  GATGAGTCTTTCACTTTGATTTTGAAAATACACTTTGAATTCCAAGAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTCTTTCACTTTGATTTTGAAAATACACTTTGAATTCCAAGAATC  100

seq1  TTTGATGAATAAAAGGCTCTACAGTATCTCCTATTGGCTGGATGTGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGAATAAAAGGCTCTACAGTATCTCCTATTGGCTGGATGTGTATC  150

seq1  CATCCTGTTAGAACAGGATAGATGGCAGCACTGTTAAAATAAATATGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTTAGAACAGGATAGATGGCAGCACTGTTAAAATAAATATGGAG  200

seq1  ACTGACCTCTTTAGAAACGGATTGTTCTTAATCAGAACAGTGAAGAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCTCTTTAGAAACGGATTGTTCTTAATCAGAACAGTGAAGAGCAG  250

seq1  CAGTCTCTCTAGAGGAGTGTAGACTTAACACAAATTGTGTAGAAGGGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTCTAGAGGAGTGTAGACTTAACACAAATTGTGTAGAAGGGATC  300

seq1  AGGGCTTTATAGAGTGAAAAGATTCCATCTGTAGTTCAGTTTCCCTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTTATAGAGTGAAAAGATTCCATCTGTAGTTCAGTTTCCCTGCAG  350

seq1  TCTCAAAGTGATAAATAGCAACAGATCTTGGTAAGATGATCACATCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGTGATAAATAGCAACAGATCTTGGTAAGATGATCACATCACAA  400

seq1  GTTTCCAGGATCTTCTTCTCCCCCAGGAGATTAACAGTGAAGTCAATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGGATCTTCTTCTCCCCCAGGAGATTAACAGTGAAGTCAATTTT  450

seq1  TCTGTACAGAGTTTCTCAGCTCACCTGAGGCTTTCATGTCACCTCCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACAGAGTTTCTCAGCTCACCTGAGGCTTTCATGTCACCTCCTATT  500

seq1  AACCTTTTACCTCCTATCATATATTCATATGTTGAAACACTGACCTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTTACCTCCTATCATATATTCATATGTTGAAACACTGACCTTATA  550

seq1  GGATCCTTTTTTTTTCTTTTTCTTTTTTAAGGAGGCATCATGATTATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTTTTTTTTTCTTTTTCTTTTTTAAGGAGGCATCATGATTATGTG  600

seq1  AGGAAAGATCTTGTAATTGGGATTAATGAACTGTAAGTATCCCTACAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGATCTTGTAATTGGGATTAATGAACTGTAAGTATCCCTACAGGT  650

seq1  ATAATCCAAGAAAGTGAGCCTTGCAAAGAGATGAAATTGAAAACCTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCAAGAAAGTGAGCCTTGCAAAGAGATGAAATTGAAAACCTTGTG  700

seq1  CAGATTTATTTTATCCACCTGGATCATACTTTGGTGAGTCCAATACCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTATTTTATCCACCTGGATCATACTTTGGTGAGTCCAATACCAGA  750

seq1  CAGTTAATTGTTAGCATATTTAAAACACAGTACAATTTGTGAAAAAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAATTGTTAGCATATTTAAAACACAGTACAATTTGTGAAAAAGTTT  800

seq1  TCAGGCAACAATAAGTAAAGTCAGTCCAATATCAGGTACACATTAAAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAACAATAAGTAAAGTCAGTCCAATATCAGGTACACATTAAAGCT  850

seq1  TAAGATGTGACTGACTATATTACAAAGATGGTTCTATAGCTAAAACATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGTGACTGACTATATTACAAAGATGGTTCTATAGCTAAAACATCT  900

seq1  AAAATCTAATGTAGTCTCTGATTAATAGCATTGAGATCAGCAGGTCATAA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAATCTAATGTAGTCTCTGATTAATAGCATTGAGATCAGCA-GTCATAA  949

seq1  AGTACATGTTGATATCTTCCCTAAGAAATGGCTAACAGGGGATTGCAGAG  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTACATGTTGATATCTTCCCTAAGAAATGGCTAACA-GGGATTGCAGAG  998

seq1  ATAGCTCAGCAGTTAAAAACACTGGCTGCTCTTTTGGAGGTCTTCTCAGA  1050
      |||||||||||||| |||||||||||||||||||| |||||| |||||||
seq2  ATAGCTCAGCAGTT-AAAACACTGGCTGCTCTTTT-GAGGTC-TCTCAGA  1045

seq1  TTTCTGGATAGAATGCAGGTATTTTATTTTGTTTTATTG-AGGACACA--  1097
       ||||||| |||||||||||||||||||||||||||||| ||||||||  
seq2  -TTCTGGAAAGAATGCAGGTATTTTATTTTGTTTTATTGAAGGACACAAA  1094

seq1  -CCCGTTTATGATTA  1111
       || |||||||||||
seq2  CCCGGTTTATGATTA  1109


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