BAC Information

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BAC

Clone NameB6Ng01-195A11
Chromosome2 (Build37)
Map Location 105,518,776 - 105,662,636
singlet/doubletdoublet
Overlap genePax6, Elp4, LOC100043394
Upstream geneTcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391
Downstream geneImmp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15, C130023O10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195A11.bB6Ng01-195A11.g
ACCGA017562GA017563
length1,203748
definitionB6Ng01-195A11.b B6Ng01-195A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,661,432 - 105,662,636)(105,518,776 - 105,519,523)
sequence
gaattcaagcaagtctggaagcaggagctgatgcagaggccatggaagga
tgttctttactggcttgcttcccctgctctcttacagaactcaagactac
cagcccagagatggtcccacccacaaggcgcctttcccccttgatcacta
attgagaaaatgccttacagttggatctcatggaggcttttcctcaactg
aaggtcctttctctgtgataactccagctgtgtcaagttgacacaaaact
agccagtacaggcccacctctagagatgggggtctttgttgtggtttgaa
tctagaataacctttgttcaattgaaccccagcttatggcactattctga
aggctatggagcctttatgaagcaaggtctggctggtggaggtaagttat
taggagcaagcctcagaggttagagccctgattctagccccatggtatac
tttttgccacccattcctgtcactgtgaacttcaccataccttcccacca
cagtcaactgaagttgccccaaaactgaaagatttgtactactataacaa
aatacctgaggttgtctgacagatacaaatcagaagtttattttctcaca
gatgtgttagccaaagccttcaaaaaccaaagttctggcagttttgttgt
gttgtaactgctaccaggtgctgagtctctcttatacctgggtatttgca
agcaagactgaagatttgttaggtggagtcaaaaacaaaacaaaaaaaca
aaacaacaacaaaaaaaccaaaacaacaaaaagcaaacagcagaaaagct
taaaatgaaaactaaaggaacaaaatgatagtctatgaactgtgagccaa
agaaaaagagcagacaacaactgctatggatacatgaagaaagaggaaag
attgaacgttgggtagcaaagaagacaccatccaactctccacaatattg
aggaaagattctatcctgtggcttttatatatgctgaaacgcatagttaa
taaaagcaaagtagacaatctaagtgcagtcagcagcctgctgcttcaga
ggctcaacattcatgaataacattgagcctcaccatcagaagcaacactg
ttcaactgtcaagtattaataaacatcctatgtaagctaaggaattgtaa
taaggccatctatggtaactggaaggtcaagtattggaacagtcttagga
aaa
gaattctttgcagggtggcaaaattaatcatcatcacagctaaaacaaaa
caaaacggggggggggaatgatttcttaaaaataaaactaaatgagatgc
tgtgactatttcattattttaaccctccccctttttcctgggcaatcctc
ttgaatgggctctttattgtaactccccctttccaattgagctccccacg
gtgcccttgtatctttttacagcccctaacaactcacaccagtaacacaa
ttacctccagatatttataacaagaaattactttactattttctccacct
cactcccaagaaccctctttttgagggaaagcccggaggactggacgcct
tgaggggcgctgtggcaagtcagtacttcagtgagtggagtcctcatttt
ttcctttgggagttgcagagttgttggtttctttgcttggacctgatgta
gctgggttgagagcctgggctttactgtctgggtttggggagagccacag
aataaaagccattgtttggtgtctgtagactttgtctacacccccttccc
gtttgtactttttaaaacagcgaggcgaggtggacagcttgtgtcacggt
acaggaaaagaggaagatgtaaacaccaaaagcaaagttagctacaataa
atgagatctagggtaaaaggctcaccacttgctcagtcaggaaggagctg
agagatggactgtgggggtctgactggaaagcgtttttggggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_105661432_105662636
seq2: B6Ng01-195A11.b_44_1246 (reverse)

seq1  TTTTCCTAAGACTGTTTCAATAACTTTTACCCTCACAATTAACATGATTG  50
      |||||||||||||||| |||||   || ||| || || ||| |||   ||
seq2  TTTTCCTAAGACTGTTCCAATA--CTTGACCTTC-CAGTTACCATAGATG  47

seq1  GCTATATTTCCATATCCTAGCTAACATAGGATGTTATTTTAAATACTTGA  100
      ||  |||| | ||  | ||||| |||||||||||  || | |||||||||
seq2  GCCTTATTACAATTCCTTAGCTTACATAGGATGT--TTATTAATACTTGA  95

seq1  CAGTTGAACAGTGTTGCCTCTGAT-GTGA-GCTC-ATG-TATTCATGAAT  146
      ||||||||||||||||| |||||| |||| |||| ||| |||||||||||
seq2  CAGTTGAACAGTGTTGCTTCTGATGGTGAGGCTCAATGTTATTCATGAAT  145

seq1  G-TGAGCCTCTGAAGCAGCAAGGCTTGCTGACTGCACTTAGATTGTCTAC  195
      | ||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  GTTGAGCCTCTGAAGCAGC-AGGC-TGCTGACTGCACTTAGATTGTCTAC  193

seq1  TTTTGCTTTTATTAACTATGCGTTTCAGCATATATAAAAGCCACAGGATA  245
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTGCTTTTATTAACTATGCGTTTCAGCATATATAAAAGCCACAGGATA  242

seq1  GAATCTTTCCTCAATATTGTGGAGAGTTGGATGGTGTCTTCTTTGCTACC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTCCTCAATATTGTGGAGAGTTGGATGGTGTCTTCTTTGCTACC  292

seq1  CAACGTTCAATCTTTCCTCTTTCTTCATGTATCCATAGCAGTTGTTGTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTTCAATCTTTCCTCTTTCTTCATGTATCCATAGCAGTTGTTGTCT  342

seq1  GCTCTTTTTCTTTGGCTCACAGTTCATAGACTATCATTTTGTTCC-TTAG  394
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTCTTTTTCTTTGGCTCACAGTTCATAGACTATCATTTTGTTCCTTTAG  392

seq1  TTTTCATTTTAAGCTTTTCTGCTGTTTGCTTTTTGTTGTTTTGGTTTTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTTAAGCTTTTCTGCTGTTTGCTTTTTGTTGTTTTGGTTTTTT  442

seq1  TGTTGTTGTTTTGTTTTTTTGTTTTGTTTTTGACTCCACCTAACAAATCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTTTGTTTTTTTGTTTTGTTTTTGACTCCACCTAACAAATCT  492

seq1  TCAGTCTTGCTTGCAAATACCCAGGTATAAGAGAGACTCAGCACCTGGTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTGCTTGCAAATACCCAGGTATAAGAGAGACTCAGCACCTGGTA  542

seq1  GCAGTTACAACACAACAAAACTGCCAGAACTTTGGTTTTTGAAGGCTTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTACAACACAACAAAACTGCCAGAACTTTGGTTTTTGAAGGCTTTG  592

seq1  GCTAACACATCTGTGAGAAAATAAACTTCTGATTTGTATCTGTCAGACAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACACATCTGTGAGAAAATAAACTTCTGATTTGTATCTGTCAGACAA  642

seq1  CCTCAGGTATTTTGTTATAGTAGTACAAATCTTTCAGTTTTGGGGCAACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGTATTTTGTTATAGTAGTACAAATCTTTCAGTTTTGGGGCAACT  692

seq1  TCAGTTGACTGTGGTGGGAAGGTATGGTGAAGTTCACAGTGACAGGAATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGACTGTGGTGGGAAGGTATGGTGAAGTTCACAGTGACAGGAATG  742

seq1  GGTGGCAAAAAGTATACCATGGGGCTAGAATCAGGGCTCTAACCTCTGAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAAAAAGTATACCATGGGGCTAGAATCAGGGCTCTAACCTCTGAG  792

seq1  GCTTGCTCCTAATAACTTACCTCCACCAGCCAGACCTTGCTTCATAAAGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTCCTAATAACTTACCTCCACCAGCCAGACCTTGCTTCATAAAGG  842

seq1  CTCCATAGCCTTCAGAATAGTGCCATAAGCTGGGGTTCAATTGAACAAAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGCCTTCAGAATAGTGCCATAAGCTGGGGTTCAATTGAACAAAG  892

seq1  GTTATTCTAGATTCAAACCACAACAAAGACCCCCATCTCTAGAGGTGGGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCTAGATTCAAACCACAACAAAGACCCCCATCTCTAGAGGTGGGC  942

seq1  CTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGA  992

seq1  GAAAGGACCTTCAGTTGAGGAAAAGCCTCCATGAGATCCAACTGTAAGGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACCTTCAGTTGAGGAAAAGCCTCCATGAGATCCAACTGTAAGGC  1042

seq1  ATTTTCTCAATTAGTGATCAAGGGGGAAAGGCGCCTTGTGGGTGGGACCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCAATTAGTGATCAAGGGGGAAAGGCGCCTTGTGGGTGGGACCA  1092

seq1  TCTCTGGGCTGGTAGTCTTGAGTTCTGTAAGAGAGCAGGGGAAGCAAGCC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGCTGGTAGTCTTGAGTTCTGTAAGAGAGCAGGGGAAGCAAGCC  1142

seq1  AGTAAAGAACATCCTTCCATGGCCTCTGCATCAGCTCCTGCTTCCAGACT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAACATCCTTCCATGGCCTCTGCATCAGCTCCTGCTTCCAGACT  1192

seq1  TGCTTGAATTC  1205
      |||||||||||
seq2  TGCTTGAATTC  1203

seq1: chr2_105518776_105519523
seq2: B6Ng01-195A11.g_65_812

seq1  GAATTCTTTGCAGGGTGGCAAAATTAATCATCATCACAGCTAAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCAGGGTGGCAAAATTAATCATCATCACAGCTAAAACAAAA  50

seq1  CAAAACGGGGGGGGGGAATGATTTCTTAAAAATAAAACTAAATGAGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACGGGGGGGGGGAATGATTTCTTAAAAATAAAACTAAATGAGATGC  100

seq1  TGTGACTATTTCATTATTTTAACCCTCCCCCTTTTTCCTGGGCAATCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTATTTCATTATTTTAACCCTCCCCCTTTTTCCTGGGCAATCCTC  150

seq1  TTGAATGGGCTCTTTATTGTAACTCCCCCTTTCCAATTGAGCTCCCCACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGGGCTCTTTATTGTAACTCCCCCTTTCCAATTGAGCTCCCCACG  200

seq1  GTGCCCTTGTATCTTTTTACAGCCCCTAACAACTCACACCAGTAACACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTTGTATCTTTTTACAGCCCCTAACAACTCACACCAGTAACACAA  250

seq1  TTACCTCCAGATATTTATAACAAGAAATTACTTTACTATTTTCTCCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCCAGATATTTATAACAAGAAATTACTTTACTATTTTCTCCACCT  300

seq1  CACTCCCAAGAACCCTCTTTTTGAGGGAAAGCCCGGAGGACTGGACGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCAAGAACCCTCTTTTTGAGGGAAAGCCCGGAGGACTGGACGCCT  350

seq1  TGAGGGGCGCTGTGGCAAGTCAGTACTTCAGTGAGTGGAGTCCTCATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGCGCTGTGGCAAGTCAGTACTTCAGTGAGTGGAGTCCTCATTTT  400

seq1  TTCCTTTGGGAGTTGCAGAGTTGTTGGTTTCTTTGCTTGGACCTGATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGGGAGTTGCAGAGTTGTTGGTTTCTTTGCTTGGACCTGATGTA  450

seq1  GCTGGGTTGAGAGCCTGGGCTTTACTGTCTGGGTTTGGGGAGAGCCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTTGAGAGCCTGGGCTTTACTGTCTGGGTTTGGGGAGAGCCACAG  500

seq1  AATAAAAGCCATTGTTTGGTGTCTGTAGACTTTGTCTACACCCCCTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGCCATTGTTTGGTGTCTGTAGACTTTGTCTACACCCCCTTCCC  550

seq1  GTTTGTACTTTTTAAAACAGCGAGGCGAGGTGGACAGCTTGTGTCACGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTACTTTTTAAAACAGCGAGGCGAGGTGGACAGCTTGTGTCACGGT  600

seq1  ACAGGAAAAGAGGAAGATGTAAACACCAAAAGCAAAGTTAGCTACAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAAGAGGAAGATGTAAACACCAAAAGCAAAGTTAGCTACAATAA  650

seq1  ATGAGATCTAGGGTAAAAGGCTCACCACTTGCTCAGTCAGGAAGGAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATCTAGGGTAAAAGGCTCACCACTTGCTCAGTCAGGAAGGAGCTG  700

seq1  AGAGATGGACTGTGGGGGTCTGACTGGAAAGCGTTTTTGGGGGGTGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGACTGTGGGGGTCTGACTGGAAAGCGTTTTTGGGGGGTGGG  748