BAC Information

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BAC

Clone NameB6Ng01-198N17
Chromosome2 (Build37)
Map Location 44,464,093 - 44,648,779
singlet/doubletdoublet
Overlap geneGtdc1
Upstream geneKynu, Arhgap15
Downstream geneZeb2, LOC100042661, LOC100041337
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198N17.bB6Ng01-198N17.g
ACCGA020343GA020344
length1,0031,093
definitionB6Ng01-198N17.b B6Ng01-198N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,464,093 - 44,465,084)(44,647,681 - 44,648,779)
sequence
gaattcatgctaagtactataaatttagtccaatactagatggactatga
ctctatgcggctatggactctagaggaaaacctactactgccactttctc
aagctcctatgttctgcaactgaattttcaatacttatcctggtatttac
ggataagtgcagctttccctcttcatcaaagaagctacttttggcagcag
atggagaccaatcataaattcacaactaatcaaaatgcaaacaacaactg
acccaggcttaatctacacatctaaaatacaactcctatacttcttaagg
ggtagggaacattgcagtagaatggtagaaagactgtaagggtcagagga
ccagagcatctgctactagatagtgacttctctgtgtgataggatggcta
tactcaaaaaatcacaacaatatgaccaaagtaataagaccagcacaatg
acagtatcagttggtttgcccttgtggatggggagatttcataaacttac
atcttgtatcataaagggaaacaaaacctttgcagttttaacacaggttc
acattcagatcacttcactgctttttcttgcaacatgaatgactcaggag
ctaggaattatatgggaatcctttcttcaatgctgttcatatcctctatg
aagtcttgactgacttttcctgggaaaagtagttgcttttgcttttggga
tttcacttattttgtattgagatactcttggagttctctggggcaggtag
taaaaaagaaacaaatgtagaagggtattagaagtattaatcacattttc
tgtatccatttcgtctgttgagggacatctgggttctttccagcttctgg
ctaattataaatagtgctgctatgaacatagtggagcatgtgtccttatt
accagtttggaaacatctttctgggtatatgcccaagagaaggtattgct
gggatctagtggtagtactatgttccagtttttctgaaggaacccgccag
act

gaattcatgttttcagagttctttcccacagctttaaaggatgtcctgaa
ggtctcagcatttaccattttgctaagatattagccgcacactctcatat
acgtgactaatgctgtgtctgattatcatggatgagaaacatgaagatac
acacacacacacacacacacacacacacacaaaacacacacacacacaca
cacaaggcttataccctacagcaactattggcattcttgaaggcctatgc
cttgctggttctcttccatgccatgtcaagccataccagcaggacttgcc
aacttccttcttcccaaatagaaataaaactaagaataaaagaaaccagt
acaataaaaaatattcaaacaaagcaaactgagacaaaaagtatctataa
aaattctattgagttagttttgttttggccaatgattcctaagcatagaa
cttgccctgaagtatatttaaaatacccagtgaaacatttttggagaaaa
atgacttttcctttggtagtggatattagttgtaggtagcttcttggtca
gggaaggaggcccacatctattagaacatttgtggagctactagaaaatt
taaaatagtatgttttatttttattactgatatactatatatccataagg
actaccctctgaggaaatttatcttacagtactttagattattagtggtt
ttttatgtatggatccttagtatttttaacattgaggcatttggatcatt
tgaaatttattttgttatgtgctggtctatgtcagccttttaccttctgt
agattccttcaacttggctcaatatcattcattaggactttcacctttct
tttgataacttaatgatttatttattgtttgggtttgattttctaggcaa
tttttgtttcttcctaatttttaatgttctgtaacatgttctgtagcatt
gttttagatggttttcctccctatgttaaacaggtttgttttccctttgt
ctataacgaaaatctcctgagtttgtaaagtctgtagtcccctcaatgtt
aaccctatatttacactgctagaatacacaagcatgtatttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_44464093_44465084
seq2: B6Ng01-198N17.b_46_1048

seq1  GAATTCATGCTAAGTACTATAAATTTAGTCCAATACTAGATGGACTATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTAAGTACTATAAATTTAGTCCAATACTAGATGGACTATGA  50

seq1  CTCTATGCGGCTATGGACTCTAGAGGAAAACCTACTACTGCCACTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGCGGCTATGGACTCTAGAGGAAAACCTACTACTGCCACTTTCTC  100

seq1  AAGCTCCTATGTTCTGCAACTGAATTTTCAATACTTATCCTGGTATTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCTATGTTCTGCAACTGAATTTTCAATACTTATCCTGGTATTTAC  150

seq1  GGATAAGTGCAGCTTTCCCTCTTCATCAAAGAAGCTACTTTTGGCAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGTGCAGCTTTCCCTCTTCATCAAAGAAGCTACTTTTGGCAGCAG  200

seq1  ATGGAGACCAATCATAAATTCACAACTAATCAAAATGCAAACAACAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGACCAATCATAAATTCACAACTAATCAAAATGCAAACAACAACTG  250

seq1  ACCCAGGCTTAATCTACACATCTAAAATACAACTCCTATACTTCTTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGCTTAATCTACACATCTAAAATACAACTCCTATACTTCTTAAGG  300

seq1  GGTAGGGAACATTGCAGTAGAATGGTAGAAAGACTGTAAGGGTCAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGAACATTGCAGTAGAATGGTAGAAAGACTGTAAGGGTCAGAGGA  350

seq1  CCAGAGCATCTGCTACTAGATAGTGACTTCTCTGTGTGATAGGATGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCATCTGCTACTAGATAGTGACTTCTCTGTGTGATAGGATGGCTA  400

seq1  TACTCAAAAAATCACAACAATATGACCAAAGTAATAAGACCAGCACAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAAAAATCACAACAATATGACCAAAGTAATAAGACCAGCACAATG  450

seq1  ACAGTATCAGTTGGTTTGCCCTTGTGGATGGGGAGATTTCATAAACTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATCAGTTGGTTTGCCCTTGTGGATGGGGAGATTTCATAAACTTAC  500

seq1  ATCTTGTATCATAAAGGGAAACAAAACCTTTGCAGTTTTAACACAGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTATCATAAAGGGAAACAAAACCTTTGCAGTTTTAACACAGGTTC  550

seq1  ACATTCAGATCACTTCACTGCTTTTTCTTGCAACATGAATGACTCAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGATCACTTCACTGCTTTTTCTTGCAACATGAATGACTCAGGAG  600

seq1  CTAGGAATTATATGGGAATCCTTTCTTCAATGCTGTTCATATCCTCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAATTATATGGGAATCCTTTCTTCAATGCTGTTCATATCCTCTATG  650

seq1  AAGTCTTGACTGACTTTTCCTGGGAAAAGTAGTTGCTTTTGCTTTTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGACTGACTTTTCCTGGGAAAAGTAGTTGCTTTTGCTTTTGGGA  700

seq1  TTTCACTTATTTTGTATTGAGATACTCTTGGAGTTCTCTGGGGCAGGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTATTTTGTATTGAGATACTCTTGGAGTTCTCTGGGGCAGGTAG  750

seq1  TAAAAAAGAAACAAATGTAGAAGGGTATTAGAAGTATTAATCACATTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGAAACAAATGTAGAAGGGTATTAGAAGTATTAATCACATTTTC  800

seq1  TGTATCCA-TTCGTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGG  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCATTTCGTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGG  850

seq1  CT-ATTATAAATAGTGCTGCTATGAACATAGTGGAGCATGTGTCCTTATT  898
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATAAATAGTGCTGCTATGAACATAGTGGAGCATGTGTCCTTATT  900

seq1  ACCAGTT--GGAACATC-TTCTGGGTATATGCCCAGGAG-AGGTATTGCT  944
      |||||||  | |||||| ||||||||||||||||| ||| ||||||||||
seq2  ACCAGTTTGGAAACATCTTTCTGGGTATATGCCCAAGAGAAGGTATTGCT  950

seq1  -GGATCTAGTGGTAGTACTATG-TCCAG-TTTTCTG-AGGAA-CCGCCAG  989
       ||||||||||||||||||||| ||||| ||||||| ||||| |||||||
seq2  GGGATCTAGTGGTAGTACTATGTTCCAGTTTTTCTGAAGGAACCCGCCAG  1000

seq1  ACT  992
      |||
seq2  ACT  1003


seq1: chr2_44647681_44648779
seq2: B6Ng01-198N17.g_69_1161 (reverse)

seq1  GCAAATACATGCCTTTGTTATCTAAACAGTGTAATTATAAAGGTTAACAA  50
      |||||||||||| | |||  ||| | |||||||| ||| | ||||||| |
seq2  GCAAATACATGCTTGTGTATTCT-AGCAGTGTAAATAT-AGGGTTAAC-A  47

seq1  TGGAGGGGACTACAGATTTTACAAACTCAAGGAGAATTTTGTTAATAGAA  100
      | |||||||||||||| ||||||||||| |||||| ||| ||| |||| |
seq2  TTGAGGGGACTACAGACTTTACAAACTC-AGGAGATTTTCGTT-ATAG-A  94

seq1  CAAAGGAAAACAAAACCTGTTTAACATA-GGAGGAAAACAATCTAAAACA  149
      |||||| |||  |||||||||||||||| |||||||||| ||||||||||
seq2  CAAAGGGAAAACAAACCTGTTTAACATAGGGAGGAAAACCATCTAAAACA  144

seq1  TTGCTACAGAACATGTTACAGAACATTAAAAAATTAAGAAGAAACAAAAA  199
       |||||||||||||||||||||||||| |||||||| |||||||| ||||
seq2  ATGCTACAGAACATGTTACAGAACATT-AAAAATTAGGAAGAAAC-AAAA  192

seq1  ATTGCCTAGAAAATCAAA-CCAAACAATAAATAAATCATTAAGTTATCAA  248
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTGCCTAGAAAATCAAACCCAAACAATAAATAAATCATTAAGTTATCAA  242

seq1  AAGAAAGGTGAAAGTCCTAATGAATGATATTGAGCCAAGTTGAAGGAATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGTGAAAGTCCTAATGAATGATATTGAGCCAAGTTGAAGGAATC  292

seq1  TACAGAAGGTAAAAGGCTGACATAGACCAGCACATAACAAAATAAATTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGGTAAAAGGCTGACATAGACCAGCACATAACAAAATAAATTTC  342

seq1  AAATGATCCAAATGCCTCAATGTTAAAAATACTAAGGATCCATACATAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATCCAAATGCCTCAATGTTAAAAATACTAAGGATCCATACATAAA  392

seq1  AAACCACTAATAATCTAAAGTACTGTAAGATAAATTTCCTCAGAGGGTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACTAATAATCTAAAGTACTGTAAGATAAATTTCCTCAGAGGGTAG  442

seq1  TCCTTATGGATATATAGTATATCAGTAATAAAAATAAAACATACTATTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATGGATATATAGTATATCAGTAATAAAAATAAAACATACTATTTT  492

seq1  AAATTTTCTAGTAGCTCCACAAATGTTCTAATAGATGTGGGCCTCCTTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTAGTAGCTCCACAAATGTTCTAATAGATGTGGGCCTCCTTCC  542

seq1  CTGACCAAGAAGCTACCTACAACTAATATCCACTACCAAAGGAAAAGTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAAGAAGCTACCTACAACTAATATCCACTACCAAAGGAAAAGTCA  592

seq1  TTTTTCTCCAAAAATGTTTCACTGGGTATTTTAAATATACTTCAGGGCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCCAAAAATGTTTCACTGGGTATTTTAAATATACTTCAGGGCAA  642

seq1  GTTCTATGCTTAGGAATCATTGGCCAAAACAAAACTAACTCAATAGAATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATGCTTAGGAATCATTGGCCAAAACAAAACTAACTCAATAGAATT  692

seq1  TTTATAGATACTTTTTGTCTCAGTTTGCTTTGTTTGAATATTTTTTATTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGATACTTTTTGTCTCAGTTTGCTTTGTTTGAATATTTTTTATTG  742

seq1  TACTGGTTTCTTTTATTCTTAGTTTTATTTCTATTTGGGAAGAAGGAAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTTTCTTTTATTCTTAGTTTTATTTCTATTTGGGAAGAAGGAAGT  792

seq1  TGGCAAGTCCTGCTGGTATGGCTTGACATGGCATGGAAGAGAACCAGCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTCCTGCTGGTATGGCTTGACATGGCATGGAAGAGAACCAGCAA  842

seq1  GGCATAGGCCTTCAAGAATGCCAATAGTTGCTGTAGGGTATAAGCCTTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGGCCTTCAAGAATGCCAATAGTTGCTGTAGGGTATAAGCCTTGT  892

seq1  GTGTGTGTGTGTGTGTGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  942

seq1  TGTATCTTCATGTTTCTCATCCATGATAATCAGACACAGCATTAGTCACG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTCATGTTTCTCATCCATGATAATCAGACACAGCATTAGTCACG  992

seq1  TATATGAGAGTGTGCGGCTAATATCTTAGCAAAATGGTAAATGCTGAGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAGAGTGTGCGGCTAATATCTTAGCAAAATGGTAAATGCTGAGAC  1042

seq1  CTTCAGGACATCCTTTAAAGCTGTGGGAAAGAACTCTGAAAACATGAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGACATCCTTTAAAGCTGTGGGAAAGAACTCTGAAAACATGAATT  1092

seq1  C  1099
      |
seq2  C  1093


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