BAC Information

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BAC

Clone NameB6Ng01-199B16
Chromosome2 (Build37)
Map Location 72,253,341 - 72,408,779
singlet/doubletdoublet
Overlap geneB230120H23Rik, Cdca7, LOC383712
Upstream geneHat1, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6, Pdk1, Rapgef4, LOC100040270
Downstream geneLOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199B16.bB6Ng01-199B16.g
ACCGA020527GA020528
length1,118998
definitionB6Ng01-199B16.b B6Ng01-199B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,253,341 - 72,254,443)(72,408,241 - 72,408,779)
sequence
gaattctcccagccttgtcatctaaagcaatggttctcaaccttcctaac
tctgagaccctttaatacagctccccatactgtggtgacctccccccacc
caaccataaaattatttcactgctacttcataactataattttgctatgg
ttatggatcgtaatgtaaatatctgaaatgcggggtatctgatatgcgtt
ccttctaaaagagttgtttgacacccaccaccccctccacaaaggggtca
ccacccaagggtggggaactgctgatctaaagtgtcctctctatgagtct
cggtgccccctaggggtaaactggtgcatgatgaggctacagcctcgctg
atggctttgctcctaaattcccctcctgtccatatggtaaatgctggggc
attaacttgccctacccagctcagatctgaaggacagctttatctattgc
ataccctgaggtctaacatccctgtctggcagctttatctattgcatacc
ctaaggtctaacatccctgtctggcttagtgggggtttcacttccagcgt
catttcagcttggctttttctcattcatttttttaaaactgaattctatt
ttcatagcttatattggccttgttacttcattcgtctctcgccttttatc
ttgagttgtctgaacatagttttaatcctattcttgaattctttgctagg
agttctttggggtcatttccctggagtctcttactatgggataagtaatt
tggggaggagacaggctgttctgaattttcacttttgtctctcttttgca
cagacttgtgcatttggaaatcactttccttaagtaggagtgtagactca
ggtctgatggtcaggagactgcttgcctgctaacacctagagtcaggaca
acgggagaagtgggcagggactttcagggccaagaatcccttaacagttg
ggaacaggagctaggttgactaagaagtgttagcaacaaacagtagaggc
ctggcgggccttaccctgtagagtgagccctaatgggcctggtggtttaa
taatcttctagttagccaccgccttgttccttttaatggatgacaagttg
gatatcatgactttgaca

gaattcaacagagaaacggcaggaagacccttacaacaactgtccaaggg
atcgctgatgattacaataaaaagaaactagtgaaggtgtttaagaagaa
atttgcctgcaatggtactgtagttgagcatccagaatatggagaagtaa
ttcagccacagggtgaccatcgcaagagcatgtgccagttcctgctagag
actgggctggctaaggacgatcagctgaaggttcatggttttaagtgctt
gtggctctctgaagctaagtgagaatttccttgcaatgagtagaatttcc
cttctgtcccttgtacaagtttaaaaacctcacagtttgtataatgtaat
tatttgaggtctgcttttaacttggactagtataactccttcatgcaata
aactgaaagaaccaaaaaaaaaaaaaaagaaggcacacaaatgtcaaaca
caaacatacatacatgcatacgtacacacatgcacatacatttacatgca
cacacacacatatacacattaacactcaccacattatgcacatatataca
acacaagatcactggttatcaggaaatgtaacttaaaaaaaatcattcag
gcaaaaatggttgttcaaaggagggaagatagcctggaaaggacttgggg
aaggtaaaataactgcactctgtcagtgggaatgtcggtcagttgtcatg
ggaaacacgagggaagatcctccaaaagtaaagtatatctataataggat
ccaatacccttgttactgagactgcggccagaacaaacaaagctagtgta
ttcaaggaccctggcactcactttcctatctattgcagcactattcacag
tagctagggatgggaacaagaaagaaccatcagttgatgaaaatatggca
agagaaaaatctttccacttgcaacaacatgatagaactggaaattacta
catcaaattaggtaaactatgccacagaaaacatatgtcacatgacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_72253341_72254443
seq2: B6Ng01-199B16.b_32_1149

seq1  GAATTCTCCCAGCCTTGTCATCTAAAGCAATGGTTCTCAACCTTCCTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCAGCCTTGTCATCTAAAGCAATGGTTCTCAACCTTCCTAAC  50

seq1  TCTGAGACCCTTTAATACAGCTCCCCATACTGTGGTGACCTCCCCCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGACCCTTTAATACAGCTCCCCATACTGTGGTGACCTCCCCCCACC  100

seq1  CAACCATAAAATTATTTCACTGCTACTTCATAACTATAATTTTGCTATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATAAAATTATTTCACTGCTACTTCATAACTATAATTTTGCTATGG  150

seq1  TTATGGATCGTAATGTAAATATCTGAAATGCGGGGTATCTGATATGCGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGATCGTAATGTAAATATCTGAAATGCGGGGTATCTGATATGCGTT  200

seq1  CCTTCTAAAAGAGTTGTTTGACACCCACCACCCCCTCCACAAAGGGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAAAAGAGTTGTTTGACACCCACCACCCCCTCCACAAAGGGGTCA  250

seq1  CCACCCAAGGGTGGGGAACTGCTGATCTAAAGTGTCCTCTCTATGAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAAGGGTGGGGAACTGCTGATCTAAAGTGTCCTCTCTATGAGTCT  300

seq1  CGGTGCCCCCTAGGGGTAAACTGGTGCATGATGAGGCTACAGCCTCGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCCCCCTAGGGGTAAACTGGTGCATGATGAGGCTACAGCCTCGCTG  350

seq1  ATGGCTTTGCTCCTAAATTCCCCTCCTGTCCATATGGTAAATGCTGGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTGCTCCTAAATTCCCCTCCTGTCCATATGGTAAATGCTGGGGC  400

seq1  ATTAACTTGCCCTACCCAGCTCAGATCTGAAGGACAGCTTTATCTATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTTGCCCTACCCAGCTCAGATCTGAAGGACAGCTTTATCTATTGC  450

seq1  ATACCCTGAGGTCTAACATCCCTGTCTGGCAGCTTTATCTATTGCATACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTGAGGTCTAACATCCCTGTCTGGCAGCTTTATCTATTGCATACC  500

seq1  CTAAGGTCTAACATCCCTGTCTGGCTTAGTGGGGGTTTCACTTCCAGCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTCTAACATCCCTGTCTGGCTTAGTGGGGGTTTCACTTCCAGCGT  550

seq1  CATTTCAGCTTGGCTTTTTCTCATTCATTTTTTTAAAACTGAATTCTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAGCTTGGCTTTTTCTCATTCATTTTTTTAAAACTGAATTCTATT  600

seq1  TTCATAGCTTATATTGGCCTTGTTACTTCATTCGTCTCTCGCCTTTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGCTTATATTGGCCTTGTTACTTCATTCGTCTCTCGCCTTTTATC  650

seq1  TTGAGTTGTCTGAACATAGTTTTAATCCTATTCTTGAATTCTTTGCTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTGTCTGAACATAGTTTTAATCCTATTCTTGAATTCTTTGCTAGG  700

seq1  AGTTCTTTGGGGTCATTTCCCTGGAGTCTCTTACTATGGGATAAGTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTGGGGTCATTTCCCTGGAGTCTCTTACTATGGGATAAGTAATT  750

seq1  TGGGGAGGAGACAGGCTGTTCTGAATTTTCAC-TTTGTCTCTCTTTTGCA  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGGGAGGAGACAGGCTGTTCTGAATTTTCACTTTTGTCTCTCTTTTGCA  800

seq1  CAGACTTGTGCATTTGG-AATCAC-TTCCTTAAGTAGGAGTGTAGACTCA  847
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  CAGACTTGTGCATTTGGAAATCACTTTCCTTAAGTAGGAGTGTAGACTCA  850

seq1  GGTCTGATGGTCAGGAGACTGCTTGCCTGCTAACACCTAGAGTCAGGACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGATGGTCAGGAGACTGCTTGCCTGCTAACACCTAGAGTCAGGACA  900

seq1  ACGGGAGAAGGTGGGCAGGGAC-TTCAGGGCCAAGGATCCCTTAACAGTT  946
      ||||||||| |||||||||||| |||||||||||| ||||||||||||||
seq2  ACGGGAGAA-GTGGGCAGGGACTTTCAGGGCCAAGAATCCCTTAACAGTT  949

seq1  GGAAACAGGAGCTAGGTTGACTAAGAAGTG-TAGC-ACAAACAGTAGAGG  994
      || ||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  GGGAACAGGAGCTAGGTTGACTAAGAAGTGTTAGCAACAAACAGTAGAGG  999

seq1  CCTGGCGGGCCTTA-CCTGTAGAG-GAG-CCGAATGGGC--TGTGGTTTA  1039
      |||||||||||||| ||||||||| ||| || |||||||   ||||||||
seq2  CCTGGCGGGCCTTACCCTGTAGAGTGAGCCCTAATGGGCCTGGTGGTTTA  1049

seq1  AT-ATCTCTAAAGTAGCCA-CGCC-TGTTCC-TTTAAGTGATGACAAGTT  1085
      || ||||   |  |||||| |||| |||||| |||||  |||||||||||
seq2  ATAATCTTCTAGTTAGCCACCGCCTTGTTCCTTTTAATGGATGACAAGTT  1099

seq1  -GATATCATGACTTTGACA  1103
       ||||||||||||||||||
seq2  GGATATCATGACTTTGACA  1118


seq1: chr2_72408241_72408779
seq2: B6Ng01-199B16.g_63_601 (reverse)

seq1  GCATAATGTGGTGAGTGTTAATGTGTATATGTGTGTGTGTGCATGTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATGTGGTGAGTGTTAATGTGTATATGTGTGTGTGTGCATGTAAAT  50

seq1  GTATGTGCATGTGTGTACGTATGCATGTATGTATGTTTGTGTTTGACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGCATGTGTGTACGTATGCATGTATGTATGTTTGTGTTTGACATT  100

seq1  TGTGTGCCTTCTTTTTTTTTTTTTTTGGTTCTTTCAGTTTATTGCATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCTTCTTTTTTTTTTTTTTTGGTTCTTTCAGTTTATTGCATGAA  150

seq1  GGAGTTATACTAGTCCAAGTTAAAAGCAGACCTCAAATAATTACATTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTATACTAGTCCAAGTTAAAAGCAGACCTCAAATAATTACATTATA  200

seq1  CAAACTGTGAGGTTTTTAAACTTGTACAAGGGACAGAAGGGAAATTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGTGAGGTTTTTAAACTTGTACAAGGGACAGAAGGGAAATTCTAC  250

seq1  TCATTGCAAGGAAATTCTCACTTAGCTTCAGAGAGCCACAAGCACTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCAAGGAAATTCTCACTTAGCTTCAGAGAGCCACAAGCACTTAAA  300

seq1  ACCATGAACCTTCAGCTGATCGTCCTTAGCCAGCCCAGTCTCTAGCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAACCTTCAGCTGATCGTCCTTAGCCAGCCCAGTCTCTAGCAGGA  350

seq1  ACTGGCACATGCTCTTGCGATGGTCACCCTGTGGCTGAATTACTTCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCACATGCTCTTGCGATGGTCACCCTGTGGCTGAATTACTTCTCCA  400

seq1  TATTCTGGATGCTCAACTACAGTACCATTGCAGGCAAATTTCTTCTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGGATGCTCAACTACAGTACCATTGCAGGCAAATTTCTTCTTAAA  450

seq1  CACCTTCACTAGTTTCTTTTTATTGTAATCATCAGCGATCCCTTGGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCACTAGTTTCTTTTTATTGTAATCATCAGCGATCCCTTGGACAG  500

seq1  TTGTTGTAAGGGTCTTCCTGCCGTTTCTCTGTTGAATTC  539
      |||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTAAGGGTCTTCCTGCCGTTTCTCTGTTGAATTC  539


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