BAC Information

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BAC

Clone NameB6Ng01-200J21
Chromosome2 (Build37)
Map Location 45,441,274 - 45,575,874
singlet/doubletdoublet
Overlap geneLOC100042661
Upstream geneGtdc1, Zeb2
Downstream geneLOC100041337, LOC666604, LOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200J21.bB6Ng01-200J21.g
ACCGA021628GA021629
length1,1171,127
definitionB6Ng01-200J21.b B6Ng01-200J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,441,274 - 45,442,369)(45,574,740 - 45,575,874)
sequence
gaattcttcccttttgtcactctgtgattgcctggaagtcatagtgaatg
ttgtacacggcttctttaggaaggtaaggtaggagtttcttaatgtcaca
gagcctggccaagtgctgagagacagcagatctgctattcgtcccaaagc
ttacaactttcttattctttaccatttagcctgagtcaattttgtttagc
tcaaaagcgaaaagtatttattgaattataacaggattcacattatatat
aataagtcaaataattcctcatacatgtatttaggaggacatatttccaa
taaatagcgacataaaaacgttcttgcctcaaatttctgttgctgtatga
ctttcttcttagtccactgaggcaacactttcctttttcaatttctctat
taactttaattaggctcgtgagtttgctggccaggtgggttttccctaaa
cactcgcaacccagttttttaggctagcagtagcattaagttaagctgca
attttgaggcagaatcaacaattataagctatagaaggttccaaggccac
cacaactcattttatccatcaaggacttcagcaggaggcactttagtaag
ccagaatcggcattttttagggaatactatgggttcatttttgaaaacaa
tattggttccacagctggaagatctccaaggaaatgtctgtccctgggaa
aacatgcttagtccatatggcataaggaacaccatcctgagtggctcgtt
ctctgtttttctgtgacatattgtgtaatatggaattttccatttgtgtc
gtcataatagactagttaagtttagtctaatttgacattttagttcattt
tgttttgttttgtcttcttggaaagcataaacttgcccatatcatgatta
ttccttttaggatattaatatgcatctcattttgtagttttcttattaaa
gtcttttaaaaaagcatagactagagcagaaaaatcttttctgctctcct
acaggcattagaatcagcttcaaggtactggctgctggtttaaattaaaa
aggataggattttccattttacttcagggcaggccttaatgttatttgtt
cttcgagtgagaacagt

gaattcttggtccttgaatttgtcgaattggtaaagactctttaaaaagc
aaggaagaggttttcactctctggcttgacataagagaaaagtttatggg
ttgctaaagcagggaaactgaggaatataacctctatacctttttgacaa
agactacatatatatgctaaggttctgagaaccactggctaatggactga
ctcacgtgagccattagagacagtgtcatcaccactgtgagttccaataa
atattagaaactagaggacaggaagagagtgatagacattgttgagactg
ctgggtatgcaatagacagaactggatatccagttcatcggtaagataag
agtgtcttcatggcagaaataaatttaacaaggacaaaaaaccactatgg
aattcttgatgttgcccaatggtggagcataatctccccaaagaaggaga
gtttggtccatgtagtgtgtatcccctggggccatggtggggtgacagga
ggccaaatgcagtgttggtgagccttctccaggccttaaggacagactag
cagttctcagcatggataaaagaaacagaaagtagagatacctattatgc
cccctgctatagaggaagatgtcttagggtggggctcttcctagctgctt
tcttaatgcagcaatcaaaaatgcagatgagaaccagacacagtgacatt
tgttcatgacttcctgggaacagtcttaggcaataattagtaaaagtaga
aatgccgccacattttaaaatatggtatctttggtaagaaattgttgttc
tatgaccaggtatggtaaacttgtctattgaacaaagtgtatatttaaaa
tggatatatactgcattataatataaaaaaatacctttcagtttttacat
cttacaaacatacatcaaagtccactgtcataaattaattaaaattacat
cagaaaaattaaaaatggtactaaatcatacaaagtatataaattatgtt
tttgagcagagaatactatactatttgaaaggtaaatgtttcagccacac
tgaattccagtaggtcgtgtatttttagacatttattaaccggatcaaat
ctatgagttggagtcgctaaactttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45441274_45442369
seq2: B6Ng01-200J21.b_49_1165

seq1  GAATTCTTCCCTTTTGTCACTCTGTGATTGCCTGGAAGTCATAGTGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTTTTGTCACTCTGTGATTGCCTGGAAGTCATAGTGAATG  50

seq1  TTGTACACGGCTTCTTTAGGAAGGTAAGGTAGGAGTTTCTTAATGTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACACGGCTTCTTTAGGAAGGTAAGGTAGGAGTTTCTTAATGTCACA  100

seq1  GAGCCTGGCCAAGTGCTGAGAGACAGCAGATCTGCTATTCGTCCCAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGCCAAGTGCTGAGAGACAGCAGATCTGCTATTCGTCCCAAAGC  150

seq1  TTACAACTTTCTTATTCTTTACCATTTAGCCTGAGTCAATTTTGTTTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACTTTCTTATTCTTTACCATTTAGCCTGAGTCAATTTTGTTTAGC  200

seq1  TCAAAAGCGAAAAGTATTTATTGAATTATAACAGGATTCACATTATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCGAAAAGTATTTATTGAATTATAACAGGATTCACATTATATAT  250

seq1  AATAAGTCAAATAATTCCTCATACATGTATTTAGGAGGACATATTTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTCAAATAATTCCTCATACATGTATTTAGGAGGACATATTTCCAA  300

seq1  TAAATAGCGACATAAAAACGTTCTTGCCTCAAATTTCTGTTGCTGTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCGACATAAAAACGTTCTTGCCTCAAATTTCTGTTGCTGTATGA  350

seq1  CTTTCTTCTTAGTCCACTGAGGCAACACTTTCCTTTTTCAATTTCTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTAGTCCACTGAGGCAACACTTTCCTTTTTCAATTTCTCTAT  400

seq1  TAACTTTAATTAGGCTCGTGAGTTTGCTGGCCAGGTGGGTTTTCCCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTAATTAGGCTCGTGAGTTTGCTGGCCAGGTGGGTTTTCCCTAAA  450

seq1  CACTCGCAACCCAGTTTTTTAGGCTAGCAGTAGAATTAAGTTAAGCTGCA  500
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CACTCGCAACCCAGTTTTTTAGGCTAGCAGTAGCATTAAGTTAAGCTGCA  500

seq1  ATTTTGAGGCAGAATCAACAATTATAAGCTATAGAAGGTTCCAAGGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGGCAGAATCAACAATTATAAGCTATAGAAGGTTCCAAGGCCAC  550

seq1  CACAACTCATTTTATCCATCAAGGACTTCAGCAGGAGGCACTTTAGTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTCATTTTATCCATCAAGGACTTCAGCAGGAGGCACTTTAGTAAG  600

seq1  CCAGAATCGGCATTTTTTAGGGAATACTATGGGTTCATTTTTGAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCGGCATTTTTTAGGGAATACTATGGGTTCATTTTTGAAAACAA  650

seq1  TATTGGTTCCACAGCTGGAAGATCTCCAAGGAAATGTCTGTCCCTGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTTCCACAGCTGGAAGATCTCCAAGGAAATGTCTGTCCCTGGGAA  700

seq1  AACATGCTTAGTCCATATGGCATAAGGAACACCATCCTGAGTGGCTCGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCTTAGTCCATATGGCATAAGGAACACCATCCTGAGTGGCTCGTT  750

seq1  CTCTGTTTTTCTGTGACATATTGTGTAATATGGAATTTTCCATTTGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTTTCTGTGACATATTGTGTAATATGGAATTTTCCATTTGTGTC  800

seq1  GTCATAATAGACTAGTTAAGTTTAGTCTAATTTGACATTTTAGTTCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAATAGACTAGTTAAGTTTAGTCTAATTTGACATTTTAGTTCATTT  850

seq1  TGTTTTGTTTTGTCTTCTTGG-AAGCATAAACTTGCCCATATCATGATTA  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTCTTCTTGGAAAGCATAAACTTGCCCATATCATGATTA  900

seq1  T--CCTTTAGGATATTAATATGCATCTCA-TTTGTAGTTTTCTTA-TAAA  945
      |  | |||||||||||||||||||||||| ||||||||||||||| ||||
seq2  TTCCTTTTAGGATATTAATATGCATCTCATTTTGTAGTTTTCTTATTAAA  950

seq1  GTCTTTT-AAAAAGCATAGACTAGAGCAG-AAAATC-TTTCTGCTCTCCT  992
      ||||||| ||||||||||||||||||||| |||||| |||||||||||||
seq2  GTCTTTTAAAAAAGCATAGACTAGAGCAGAAAAATCTTTTCTGCTCTCCT  1000

seq1  ACAGGCATTAG-ATCAGCT--CAGGTACTGGCTGCTGGTTTAA---TAAA  1036
      ||||||||||| |||||||   |||||||||||||||||||||    |||
seq2  ACAGGCATTAGAATCAGCTTCAAGGTACTGGCTGCTGGTTTAAATTAAAA  1050

seq1  AGGATAGGA-TTTCCA-TTTACTTCA-GGCAGG-CTTAATGT--ATTGTT  1080
      ||||||||| |||||| ||||||||| |||||| ||||||||   |||||
seq2  AGGATAGGATTTTCCATTTTACTTCAGGGCAGGCCTTAATGTTATTTGTT  1100

seq1  CTCAGAGTGAG-ACAGT  1096
      ||  ||||||| |||||
seq2  CTTCGAGTGAGAACAGT  1117


seq1: chr2_45574740_45575874
seq2: B6Ng01-200J21.g_69_1195 (reverse)

seq1  GCAAATGTTTAGCGGACTTCAAACTTTATAGATTTTGACCCGTTTAATTA  50
      ||||| ||||||| |||| |||   | ||||| ||||| ||| |||||  
seq2  GCAAA-GTTTAGC-GACTCCAA--CTCATAGA-TTTGATCCGGTTAAT--  43

seq1  AAATGTCTAAAAATAACACGACTAATTGAATTTCAGTGT-GCTGAAACAT  99
      |||||||||||||| |||||||  | || | |||||||| ||||||||||
seq2  AAATGTCTAAAAAT-ACACGACCTACTGGAATTCAGTGTGGCTGAAACAT  92

seq1  TTACCTTTAAAATAGTATAGTATTCTCTGCTTCAAAACATAATTTTATAT  149
      |||||||| ||||||||||||||||||||||  ||||||||| |||||||
seq2  TTACCTTTCAAATAGTATAGTATTCTCTGCTCAAAAACATAA-TTTATAT  141

seq1  ACTTTGTATGATTTAGTTACCATTTTTAATTTTTCTGATGTAATTTTTAA  199
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  ACTTTGTATGATTTAG-TACCATTTTTAATTTTTCTGATGTAA-TTTTAA  189

seq1  TTAATTTATGACAGTGGAC-TTGATGTATGTTTGTAAGATGTAAAAACTG  248
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAATTTATGACAGTGGACTTTGATGTATGTTTGTAAGATGTAAAAACTG  239

seq1  AAAGGTA-TTTTTTATATTATAATGCAGTATATATCCATTTTAAATATAC  297
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTATTTTTTTATATTATAATGCAGTATATATCCATTTTAAATATAC  289

seq1  ACTTTGTTCAATAGACAAGTTTACCATACCTGGTCATAGAACAACAATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTCAATAGACAAGTTTACCATACCTGGTCATAGAACAACAATTT  339

seq1  CTTACCAAAGATACCATATTTTAAAATGTGGCGGCATTTCTACTTTTACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCAAAGATACCATATTTTAAAATGTGGCGGCATTTCTACTTTTACT  389

seq1  AATTATTGCCTAAGACTGTTCCCAGGAAGTCATGAACAAATGTCACTGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGCCTAAGACTGTTCCCAGGAAGTCATGAACAAATGTCACTGTG  439

seq1  TCTGGTTCTCATCTGCATTTTTGATTGCTGCATTAAGAAAGCAGCTAGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTCTCATCTGCATTTTTGATTGCTGCATTAAGAAAGCAGCTAGGA  489

seq1  AGAGCCCCACCCTAAGACATCTTCCTCTATAGCAGGGGGCATAATAGGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCCACCCTAAGACATCTTCCTCTATAGCAGGGGGCATAATAGGTA  539

seq1  TCTCTACTTTCTGTTTCTTTTATCCATGCTGAGAACTGCTAGTCTGTCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTTTCTGTTTCTTTTATCCATGCTGAGAACTGCTAGTCTGTCCT  589

seq1  TAAGGCCTGGAGAAGGCTCACCAACACTGCATTTGGCCTCCTGTCACCCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCTGGAGAAGGCTCACCAACACTGCATTTGGCCTCCTGTCACCCC  639

seq1  ACCATGGCCCCAGGGGATACACACTACATGGACCAAACTCTCCTTCTTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGCCCCAGGGGATACACACTACATGGACCAAACTCTCCTTCTTTG  689

seq1  GGGAGATTATGCTCCACCATTGGGCAACATCAAGAATTCCATAGTGGTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATTATGCTCCACCATTGGGCAACATCAAGAATTCCATAGTGGTTT  739

seq1  TTTGTCCTTGTTAAATTTATTTCTGCCATGAAGACACTCTTATCTTACCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTTGTTAAATTTATTTCTGCCATGAAGACACTCTTATCTTACCG  789

seq1  ATGAACTGGATATCCAGTTCTGTCTATTGCATACCCAGCAGTCTCAACAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGGATATCCAGTTCTGTCTATTGCATACCCAGCAGTCTCAACAA  839

seq1  TGTCTATCACTCTCTTCCTGTCCTCTAGTTTCTAATATTTATTGGAACTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATCACTCTCTTCCTGTCCTCTAGTTTCTAATATTTATTGGAACTC  889

seq1  ACAGTGGTGATGACACTGTCTCTAATGGCTCACGTGAGTCAGTCCATTAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGTGATGACACTGTCTCTAATGGCTCACGTGAGTCAGTCCATTAG  939

seq1  CCAGTGGTTCTCAGAACCTTAGCATATATATGTAGTCTTTGTCAAAAAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGTTCTCAGAACCTTAGCATATATATGTAGTCTTTGTCAAAAAGG  989

seq1  TATAGAGGTTATATTCCTCAGTTTCCCTGCTTTAGCAACCCATAAACTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGGTTATATTCCTCAGTTTCCCTGCTTTAGCAACCCATAAACTTT  1039

seq1  TCTCTTATGTCAAGCCAGAGAGTGAAAACCTCTTCCTTGCTTTTTAAAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATGTCAAGCCAGAGAGTGAAAACCTCTTCCTTGCTTTTTAAAGA  1089

seq1  GTCTTTACCAATTCGACAAATTCAAGGACCAAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTACCAATTCGACAAATTCAAGGACCAAGAATTC  1127


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