BAC Information

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BAC

Clone NameB6Ng01-201L17
Chromosome2 (Build37)
Map Location 46,274,806 - 46,393,388
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042661, LOC100041337, LOC666604, LOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201L17.bB6Ng01-201L17.g
ACCGA022422GA022423
length1,190633
definitionB6Ng01-201L17.b B6Ng01-201L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,274,806 - 46,276,012)(46,392,756 - 46,393,388)
sequence
gaattcaaattagctagccacatactttctaacagtagattaacaactgg
aagatgccaaagatttctcaaggaactctgtttcctacatttatatataa
ccaatgcaaaattctgccttataaaaagtaggctaaatatgaaagcaaaa
tacttattttacaattgcaaatgtgaaaattatatcacaaaaaatattgt
gttagaaggtagcttgtatctggacagatcacaccaggccaacacagttc
caagaaaaggtttattaaggggaagaggggaagggaagaggaaaacagga
gggcaatgaagaagggtgagggttctgggatccctgtcttttatttgggc
tgtgatgtaattagacgcactaccacacacaggtaaggtggtgggcaggt
gaagtgaatgaagtgagcactagtaatgtgtggtcgttgctatggcaaca
gtcacgtgggttcttgttgtctggggtgaaatcatcacttgattcagagg
ctgtaggccatttctgatgccaacctaaaccatgggaaaaaaaggaaaag
atacaaacaacaatgatataaaacagtacttaagcacattggaggatatt
aaaatctgaccaaaatgcaaagtaaaatacttaaaaacgatccaagtgaa
aatgagagcaactgcttatctaataaggtatgctattggtactggctact
tgtggggccaaggagatatgattagttgtggggagctggcctggaacaaa
tatagggtcaagctcaaaatcttgtgccgatactgctagaggtaggatta
ctccccagttccctgagcctgcatgacccaatgcacatagtgctgcactc
ctatctttgtcacccaaagattacatagcctggcagccaagttaaacttc
cttttcccttaataagatcatgtccacagcatgtccatgtcctctttatg
caaatgagcatcccaagtggccatgatgctggtcatgatgtacactcacc
taaaagcccttgacacccccaagtttaagtaccttgctcccccattgaat
gaaatgtcttactgaagctgtctcccaggttctgttctctgagctcactg
tcacctgaaatatctttcactgctgccattcccctgaggtaccatcaatg
ctactgctgagctagcctgaatagaaattacctggttgaa

gaattctgttcaggcgattgataggccctggtcacattcccttttctctc
ctttcatattctctgttaggtgttttatgtgtttgttttgtcatttttct
ttcttttcatggttcagattaagtaatttcaattcacctctgttaataat
tgctgaacattatctccagtgtgttcttttaaacagtcatctcaaatact
tcctttgttttgaggttatgataattttttccttttgtttttcttttttc
ttttctttcttttttttttttttttactcactctgttatatgggtccatt
tatttatcagataagatgtatgatttgtaaagaatggttacttaaaattc
tttaaccaatatagttcttatatttaaatttttcagtttttaatgaagga
gggaagagagctctttatgtggcgtttgcaatgttgcagctctgggtagc
tctcctttagctgtgagattatgctaagataaaagaaaaaaaactgctgt
aagtatgtttatgatttgtttcttaaacaattataaataatataagagta
aattgtgtagttagcccatgatttaggaatcatatatagaaactgctgtg
gctttgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_46274806_46276012
seq2: B6Ng01-201L17.b_45_1234

seq1  GAATTCAAATTAGCTAGCCACATACTTTCTAACAGTAGATTAACAACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTAGCTAGCCACATACTTTCTAACAGTAGATTAACAACTGG  50

seq1  AAGATGCCAAAGATTTCTCAAGGAACTCTGTTTCCTACATTTATATATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCCAAAGATTTCTCAAGGAACTCTGTTTCCTACATTTATATATAA  100

seq1  CCAATGCAAAATTCTGCCTTATAAAAAGTAGGCTAAATATGAAAGCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCAAAATTCTGCCTTATAAAAAGTAGGCTAAATATGAAAGCAAAA  150

seq1  TACTTATTTTACAATTGCAAATGTGAAAATTATATCACAAAAAATATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTTTACAATTGCAAATGTGAAAATTATATCACAAAAAATATTGT  200

seq1  GTTAGAAGGTAGCTTGTATCTGGACAGATCACACCAGGCCAACACAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAGGTAGCTTGTATCTGGACAGATCACACCAGGCCAACACAGTTC  250

seq1  CAAGAAAAGGTTTATTAAGGGGAAGAGGGGAAGGGAAGAGGAAAACAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAGGTTTATTAAGGGGAAGAGGGGAAGGGAAGAGGAAAACAGGA  300

seq1  GGGCAATGAAGAAGGGTGAGGGTTCTGGGATCCCTGTCTTTTATTTGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATGAAGAAGGGTGAGGGTTCTGGGATCCCTGTCTTTTATTTGGGC  350

seq1  TGTGATGTAATTAGACGCACTACCACACACAGGTAAGGTGGTGGGCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTAATTAGACGCACTACCACACACAGGTAAGGTGGTGGGCAGGT  400

seq1  GAAGTGAATGAAGTGAGCACTAGTAATGTGTGGTCGTTGCTATGGCAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAATGAAGTGAGCACTAGTAATGTGTGGTCGTTGCTATGGCAACA  450

seq1  GTCACGTGGGTTCTTGTTGTCTGGGGTGAAATCATCACTTGATTCAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGTGGGTTCTTGTTGTCTGGGGTGAAATCATCACTTGATTCAGAGG  500

seq1  CTGTAGGCCATTTCTGATGCCAACCTAAACCATGGGAAAAAAAGGAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGCCATTTCTGATGCCAACCTAAACCATGGGAAAAAAAGGAAAAG  550

seq1  ATACAAACAACAATGATATAAAACAGTACTTAAGCACATTGGAGGATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACAACAATGATATAAAACAGTACTTAAGCACATTGGAGGATATT  600

seq1  AAAATCTGACCAAAATGCAAAGTAAAATACTTAAAAACGATCCAAGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGACCAAAATGCAAAGTAAAATACTTAAAAACGATCCAAGTGAA  650

seq1  AATGAGAGCAACTGCTTATCTAATAAGGTATGCTATTGGTACTGGCTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAGCAACTGCTTATCTAATAAGGTATGCTATTGGTACTGGCTACT  700

seq1  TGTGGGGCCAAGGAGATATGATTAGTTGTGGGGAGCTGGCCTGGAACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGCCAAGGAGATATGATTAGTTGTGGGGAGCTGGCCTGGAACAAA  750

seq1  TATAGGGTCAAGCTCAAAATCTTGTGCCGATACTGCTAGAGGTAGGATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGTCAAGCTCAAAATCTTGTGCCGATACTGCTAGAGGTAGGATTA  800

seq1  CTCCCCAGTTCCCTGAGCCTGCATGACCCAATGCACATAGTGCTGCACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGTTCCCTGAGCCTGCATGACCCAATGCACATAGTGCTGCACTC  850

seq1  CTATCTTTGTCACCCAAAGATTACATAGCCTGGCAGCCAAGTTAAACTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTTGTCACCCAAAGATTACATAGCCTGGCAGCCAAGTTAAACTTC  900

seq1  C-TTTCCCTTAATAAGATCATGTCCACAGCATGTCCATGTCCTCTTTATG  949
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCTTAATAAGATCATGTCCACAGCATGTCCATGTCCTCTTTATG  950

seq1  CAAATGAGGCATCCCAAGT-GCCATGATGCTGGTCAATGATGTACACTCA  998
      ||||||| ||||||||||| ||||||||||||||| ||||||||||||||
seq2  CAAATGA-GCATCCCAAGTGGCCATGATGCTGGTC-ATGATGTACACTCA  998

seq1  CCTAAAAGCCCCTGAACACCCCCAAAGTTTTAAGTAACCTTTGCTCCCCC  1048
      ||||||||||| || ||||||||||   ||||||||  | ||||| ||||
seq2  CCTAAAAGCCCTTG-ACACCCCCAA--GTTTAAGTA--CCTTGCT-CCCC  1042

seq1  CATTGAATGAAATGTCTTACTGAAGCTGTCTCCCAAGTTTCTGTTCTCCT  1098
      |||||||||||||||||||||||||||||||||| || ||||||||||  
seq2  CATTGAATGAAATGTCTTACTGAAGCTGTCTCCC-AGGTTCTGTTCTC--  1089

seq1  TAAGCTCACTGTCACCTGAGTTATCTTTCACTGCTGGCCATTCCCCTCTG  1148
      | |||||||||||||||||  |||||||||||||| |||||||||  |||
seq2  TGAGCTCACTGTCACCTGAAATATCTTTCACTGCT-GCCATTCCC--CTG  1136

seq1  AGGGACACATCAGATGCTACATGCACGGAGGCAGAGCCTGAATAGAAATT  1198
      ||| || ||||| ||||||| ||  | |||    ||||||||||||||||
seq2  AGGTAC-CATCA-ATGCTAC-TG--CTGAG--CTAGCCTGAATAGAAATT  1179

seq1  AC--TGTTGAA  1207
      ||   ||||||
seq2  ACCTGGTTGAA  1190


seq1: chr2_46392756_46393388
seq2: B6Ng01-201L17.g_64_696 (reverse)

seq1  ACACACACACACACACACACACACACACAAAGCCACAGCAGTTTCTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACAAAGCCACAGCAGTTTCTATAT  50

seq1  ATGATTCCTAAATCATGGGCTAACTACACAATTTACTCTTATATTATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCCTAAATCATGGGCTAACTACACAATTTACTCTTATATTATTTA  100

seq1  TAATTGTTTAAGAAACAAATCATAAACATACTTACAGCAGTTTTTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTTAAGAAACAAATCATAAACATACTTACAGCAGTTTTTTTTCT  150

seq1  TTTATCTTAGCATAATCTCACAGCTAAAGGAGAGCTACCCAGAGCTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTAGCATAATCTCACAGCTAAAGGAGAGCTACCCAGAGCTGCAA  200

seq1  CATTGCAAACGCCACATAAAGAGCTCTCTTCCCTCCTTCATTAAAAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAAACGCCACATAAAGAGCTCTCTTCCCTCCTTCATTAAAAACTG  250

seq1  AAAAATTTAAATATAAGAACTATATTGGTTAAAGAATTTTAAGTAACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTAAATATAAGAACTATATTGGTTAAAGAATTTTAAGTAACCAT  300

seq1  TCTTTACAAATCATACATCTTATCTGATAAATAAATGGACCCATATAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACAAATCATACATCTTATCTGATAAATAAATGGACCCATATAACA  350

seq1  GAGTGAGTAAAAAAAAAAAAAAAAGAAAGAAAAGAAAAAAGAAAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTAAAAAAAAAAAAAAAAGAAAGAAAAGAAAAAAGAAAAACAAA  400

seq1  AGGAAAAAATTATCATAACCTCAAAACAAAGGAAGTATTTGAGATGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAATTATCATAACCTCAAAACAAAGGAAGTATTTGAGATGACTG  450

seq1  TTTAAAAGAACACACTGGAGATAATGTTCAGCAATTATTAACAGAGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGAACACACTGGAGATAATGTTCAGCAATTATTAACAGAGGTGA  500

seq1  ATTGAAATTACTTAATCTGAACCATGAAAAGAAAGAAAAATGACAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATTACTTAATCTGAACCATGAAAAGAAAGAAAAATGACAAAACA  550

seq1  AACACATAAAACACCTAACAGAGAATATGAAAGGAGAGAAAAGGGAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATAAAACACCTAACAGAGAATATGAAAGGAGAGAAAAGGGAATGT  600

seq1  GACCAGGGCCTATCAATCGCCTGAACAGAATTC  633
      |||||||||||||||||||||||||||||||||
seq2  GACCAGGGCCTATCAATCGCCTGAACAGAATTC  633


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