BAC Information

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BAC

Clone NameB6Ng01-202C22
Chromosome2 (Build37)
Map Location 18,129,941 - 18,270,401
singlet/doubletdoublet
Overlap geneMllt10, Dnajc1, LOC100041388, LOC623325
Upstream geneNebl, LOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik, LOC641254
Downstream geneLOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521, Armc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202C22.bB6Ng01-202C22.g
ACCGA022748GA022749
length1,1751,101
definitionB6Ng01-202C22.b B6Ng01-202C22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,129,941 - 18,131,109)(18,269,298 - 18,270,401)
sequence
gaattccaggacagccaaggctacacagagaaaccctgtcctgaaaaaca
aaaatcaaccaaatcaattaaaaatggtcaattcccaagtggtgctgggt
tactacctatgcagttgctttcctggatgctggtctttatcctgtttgtt
tttaaacagacttcaccatagtcttggctagcatgacactatggagacca
aactgttgagagagagagagagagagagagagagagagagagagagagag
agagagatcgatctgcatctgcttgccagtcaatcaaatgctgggattca
aggcctgtgccaccacactcagctcttgttctcttagcagtgactgtgct
ttaaataacactgtaggagagagatggagaaggcaggctttgctgactct
ggctgaagctcatctttcatcccactttttctgaaggaacagcatcaggc
cttcctataccagctgatgcagcagcagcaccacccgcctgagctccagc
agctgcagctcccgggacccacgcagatccccatcaacaatctccttgca
ggtgctcaggcgcctccactccacacagctaccaccaaccccttcctcac
catccacggggacagcacgagccagaaggtcacagtaagtatgttttgtg
ctgcatcttggaagcagggtgagccaagttggatggtcttgtctttttcc
atgttattcccccgaccttttcttcttagggccagttgttttagcagctg
gatattgcaaactgagtgtctaagctaacttaatttacgcctctcttaag
tatatcatataaggttataaggccgtttgtaatacagcattttctaaaat
gttagcaagatatatgaaattagcccattcaaacagattggttttttttt
tttctgcttttaaatggagtcacatttttgatatgggtaaaatacacaaa
aattaggcagaatttcctaacattattccagattccttgagaaaatcagt
tgctgtgctgcagagatgtccaccacctaacagcatcccaagcctcgctg
ctctcagccacctgttcactcagcttcaaggatgccggcttcactttgtt
tttctgtaagcacctgcacactatactcaccaatggaatgttccgaaacc
ttaattaccagtcaccaattataaa
gaattccaagtttagaagatacgtgctaaatgggttgttaccaaggctga
ggtgcgctccgtgtttaggagagacatctgaatagttttaaaggtttgct
cttggtgttgcccgcatgtactatactcagtattgcaagaaaaagtttgt
gaaaagaaagaagggaaagaaaaaaaaaggaattcagttatgcctgttat
gcctttcccaagtgagctaagcgtgccgataaatgttaataaaagtttca
tcatcaaaatacagcctaaaaagtgagacatgttctttgtttttaaatct
aatacttaagtagatctgaaaaacctcatcctctccattgtctgtccaga
gaatacaaatttatacatagagagatacagaactttgggacagatggggg
tactttgaaactggactataggaattctgtacgaacactaaatcttttat
tattgcattttattacttaagggagcaggccacatactatgatgagcatg
tggcagtcagaagataacctgctagagatcctgctctccttccccaacat
gagcccaagggttgaaaggttaaagggtcaagcttggtggctagcaaacc
attttgctgacccatacatatttttgaaatgaacaatccctattttaaat
gcacaaaaaatgggacaggggccagaaagatgtaagtctcacaagtcatc
ctctggcctccacatgtatgatctgaagtaaatcacttgcacacgcgcgc
acacacacacacacacacacacgtgcacacatgtgaataaacaaataaaa
gcaatgtctttgtgaagtagctaagctttatatataaatgcattagaaag
gaaaagatccttagtcattagtcattctaaagaatacttttacatgtcag
aagtatttaaatttcaaaatcttactgtagttgtagttttatttctttct
aattttatgttaaattagcatgttatttacacaagaagcattttcaactg
tgttttctagtaatagccaaatcttttaaaaattgctgtagtacagttac
atgaaagatgatatttagaatagaccaataaaacaatggggtgaagataa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_18129941_18131109
seq2: B6Ng01-202C22.b_44_1218

seq1  GAATTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCCTGAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCCTGAAAAACA  50

seq1  AAAATCAACCAAATCAATTAAAAATGGTCAATTCCCAAGTGGTGCTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAACCAAATCAATTAAAAATGGTCAATTCCCAAGTGGTGCTGGGT  100

seq1  TACTACCTATGCAGTTGCTTTCCTGGATGCTGGTCTTTATCCTGTTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCTATGCAGTTGCTTTCCTGGATGCTGGTCTTTATCCTGTTTGTT  150

seq1  TTTAAACAGACTTCACCATAGTCTTGGCTAGCATGACACTATGGAGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAGACTTCACCATAGTCTTGGCTAGCATGACACTATGGAGACCA  200

seq1  AACTGTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  250

seq1  AGAGAGATCGATCTGCATCTGCTTGCCAGTCAATCAAATGCTGGGATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATCGATCTGCATCTGCTTGCCAGTCAATCAAATGCTGGGATTCA  300

seq1  AGGCCTGTGCCACCACACTCAGCTCTTGTTCTCTTAGCAGTGACTGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGTGCCACCACACTCAGCTCTTGTTCTCTTAGCAGTGACTGTGCT  350

seq1  TTAAATAACACTGTAGGAGAGAGATGGAGAAGGCAGGCTTTGCTGACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAACACTGTAGGAGAGAGATGGAGAAGGCAGGCTTTGCTGACTCT  400

seq1  GGCTGAAGCTCATCTTTCATCCCACTTTTTCTGAAGGAACAGCATCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAGCTCATCTTTCATCCCACTTTTTCTGAAGGAACAGCATCAGGC  450

seq1  CTTCCTATACCAGCTGATGCAGCAGCAGCACCACCCGCCTGAGCTCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTATACCAGCTGATGCAGCAGCAGCACCACCCGCCTGAGCTCCAGC  500

seq1  AGCTGCAGCTCCCGGGACCCACGCAGATCCCCATCAACAATCTCCTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGCTCCCGGGACCCACGCAGATCCCCATCAACAATCTCCTTGCA  550

seq1  GGTGCTCAGGCGCCTCCACTCCACACAGCTACCACCAACCCCTTCCTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCAGGCGCCTCCACTCCACACAGCTACCACCAACCCCTTCCTCAC  600

seq1  CATCCACGGGGACAGCACGAGCCAGAAGGTCACAGTAAGTATGTTTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACGGGGACAGCACGAGCCAGAAGGTCACAGTAAGTATGTTTTGTG  650

seq1  CTGCATCTTGGAAGCAGGGTGAGCCAAGTTGGATGGTCTTGTCTTTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTTGGAAGCAGGGTGAGCCAAGTTGGATGGTCTTGTCTTTTTCC  700

seq1  ATGTTATTCCCCCGACCTTTTCTTCTTAGGGCCAGTTGTTTTAGCAGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTCCCCCGACCTTTTCTTCTTAGGGCCAGTTGTTTTAGCAGCTG  750

seq1  GATATTGCAAACTGAGTGTCTAAGCTAACTTAATTTACGCCTCTCTTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGCAAACTGAGTGTCTAAGCTAACTTAATTTACGCCTCTCTTAAG  800

seq1  TATATCATATAAGGTTATAAGGCCGTTTGTAATACAGCATTTTCTAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATATAAGGTTATAAGGCCGTTTGTAATACAGCATTTTCTAAAAT  850

seq1  GTTAGCAAGATATATGAAATTAGCCCATTCAAACAGATTGG-TTTTTTTT  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTAGCAAGATATATGAAATTAGCCCATTCAAACAGATTGGTTTTTTTTT  900

seq1  TTTCTGCTTTTAAAATGGAGTCACATTTTTGATAT-GGTAAAATACACAA  948
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  TTTCTGCTTTT-AAATGGAGTCACATTTTTGATATGGGTAAAATACACAA  949

seq1  AATTAGGGCAGAA-TTCCTAACATTATTCCAGATTCCTTGAGAAAATCAG  997
      || |  ||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAATTAGGCAGAATTTCCTAACATTATTCCAGATTCCTTGAGAAAATCAG  999

seq1  TTGCTGTGCTGCAGAGATGTCCA-CACC-AACAGCATCCAAAGCCCCGCT  1045
      ||||||||||||||||||||||| |||| |||||||||| ||||| ||||
seq2  TTGCTGTGCTGCAGAGATGTCCACCACCTAACAGCATCCCAAGCCTCGCT  1049

seq1  GCTCTCAG-CACCTG-TCACTCCAGC-TCCAGGATGCCCGGCTCACTTTG  1092
      |||||||| |||||| ||||| |||| || |||||||| |  ||||||||
seq2  GCTCTCAGCCACCTGTTCACT-CAGCTTCAAGGATGCCGGCTTCACTTTG  1098

seq1  TTTTTCTGTAGGCACCTGCACAC-ATACACACAATAGAAATGTTCCCAAA  1141
      |||||||||| |||||||||||| |||| ||| |  | |||||||| |||
seq2  TTTTTCTGTAAGCACCTGCACACTATACTCACCAATGGAATGTTCCGAAA  1148

seq1  ACTTAATTA-CAGTCACAATTTTAATAAA  1169
       |||||||| ||||||| | ||  |||||
seq2  CCTTAATTACCAGTCACCAATT--ATAAA  1175

seq1: chr2_18269298_18270401
seq2: B6Ng01-202C22.g_69_1169 (reverse)

seq1  TTTATCTTCACCCATTTGTTTATTGGGTCTATTCTAATATTCATCTTTTC  50
      |||||||||||||  ||||||  | ||||||||||||   ||||| ||||
seq2  TTTATCTTCACCCCATTGTTTTATTGGTCTATTCTAAATATCATC-TTTC  49

seq1  ATGTAAACTGTTACTTAACAGCAATTTTT-AAAGATTTGGCTATTACTAG  99
      |||| ||||| ||||  |||||||||||| ||||||||||||||||||||
seq2  ATGT-AACTG-TACT--ACAGCAATTTTTAAAAGATTTGGCTATTACTAG  95

seq1  -AAACACAGTTGAAAATGCTTCTTGTGTAAATAACATGCTAATTTAACAT  148
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACAGTTGAAAATGCTTCTTGTGTAAATAACATGCTAATTTAACAT  145

seq1  AAAATTAGAAAGAAATAAAACTACAACTACAGTAAGATTTTGAAATTTAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGAAAGAAATAAAACTACAACTACAGTAAGATTTTGAAATTTAA  195

seq1  ATACTTCTGACATGTAAAAGTATTCTTTAGAATGACTAATGACTAAGGAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCTGACATGTAAAAGTATTCTTTAGAATGACTAATGACTAAGGAT  245

seq1  CTTTTCCTTTCTAATGCATTTATATATAAAGCTTAGCTACTTCACAAAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTTCTAATGCATTTATATATAAAGCTTAGCTACTTCACAAAGA  295

seq1  CATTGCTTTTATTTGTTTATTCACATGTGTGCACGTGTGTGTGTGTGTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTTTATTTGTTTATTCACATGTGTGCACGTGTGTGTGTGTGTGT  345

seq1  GTGTGTGCGCGCGTGTGCAAGTGATTTACTTCAGATCATACATGTGGAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCGCGCGTGTGCAAGTGATTTACTTCAGATCATACATGTGGAGG  395

seq1  CCAGAGGATGACTTGTGAGACTTACATCTTTCTGGCCCCTGTCCCATTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGATGACTTGTGAGACTTACATCTTTCTGGCCCCTGTCCCATTTT  445

seq1  TTGTGCATTTAAAATAGGGATTGTTCATTTCAAAAATATGTATGGGTCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATTTAAAATAGGGATTGTTCATTTCAAAAATATGTATGGGTCAG  495

seq1  CAAAATGGTTTGCTAGCCACCAAGCTTGACCCTTTAACCTTTCAACCCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGTTTGCTAGCCACCAAGCTTGACCCTTTAACCTTTCAACCCTT  545

seq1  GGGCTCATGTTGGGGAAGGAGAGCAGGATCTCTAGCAGGTTATCTTCTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCATGTTGGGGAAGGAGAGCAGGATCTCTAGCAGGTTATCTTCTGA  595

seq1  CTGCCACATGCTCATCATAGTATGTGGCCTGCTCCCTTAAGTAATAAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACATGCTCATCATAGTATGTGGCCTGCTCCCTTAAGTAATAAAAT  645

seq1  GCAATAATAAAAGATTTAGTGTTCGTACAGAATTCCTATAGTCCAGTTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAATAAAAGATTTAGTGTTCGTACAGAATTCCTATAGTCCAGTTTC  695

seq1  AAAGTACCCCCATCTGTCCCAAAGTTCTGTATCTCTCTATGTATAAATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACCCCCATCTGTCCCAAAGTTCTGTATCTCTCTATGTATAAATTT  745

seq1  GTATTCTCTGGACAGACAATGGAGAGGATGAGGTTTTTCAGATCTACTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTCTGGACAGACAATGGAGAGGATGAGGTTTTTCAGATCTACTTA  795

seq1  AGTATTAGATTTAAAAACAAAGAACATGTCTCACTTTTTAGGCTGTATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAGATTTAAAAACAAAGAACATGTCTCACTTTTTAGGCTGTATTT  845

seq1  TGATGATGAAACTTTTATTAACATTTATCGGCACGCTTAGCTCACTTGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGAAACTTTTATTAACATTTATCGGCACGCTTAGCTCACTTGGG  895

seq1  AAAGGCATAACAGGCATAACTGAATTCCTTTTTTTTTCTTTCCCTTCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATAACAGGCATAACTGAATTCCTTTTTTTTTCTTTCCCTTCTTT  945

seq1  CTTTTCACAAACTTTTTCTTGCAATACTGAGTATAGTACATGCGGGCAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCACAAACTTTTTCTTGCAATACTGAGTATAGTACATGCGGGCAAC  995

seq1  ACCAAGAGCAAACCTTTAAAACTATTCAGATGTCTCTCCTAAACACGGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGCAAACCTTTAAAACTATTCAGATGTCTCTCCTAAACACGGAG  1045

seq1  CGCACCTCAGCCTTGGTAACAACCCATTTAGCACGTATCTTCTAAACTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCTCAGCCTTGGTAACAACCCATTTAGCACGTATCTTCTAAACTTG  1095

seq1  GAATTC  1104
      ||||||
seq2  GAATTC  1101