BAC Information

Click to search

BAC

Clone NameB6Ng01-203B21
Chromosome2 (Build37)
Map Location 123,473,914 - 123,586,729
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik, LOC100043360, Sema6d, LOC100043367, LOC100043369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203B21.bB6Ng01-203B21.g
ACCGA023421GA023422
length1,1931,122
definitionB6Ng01-203B21.b B6Ng01-203B21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,585,525 - 123,586,729)(123,473,914 - 123,475,043)
sequence
gaattccataccagccagaactacacagtgcaacttcccatttaaaaaaa
aaaaactataaataaaaaaataagatggggaaaactgagaaaaatataca
actactccttcttgttcccatacacacttatacattaaacatgcatctac
atgcacacatgtacatagatactaacacataaatatcataaaagtataca
ataaataaacacattttaaaaatgagagagcttactctaaagtaatatca
gtattttagtttggcataattcattggttactaatgtagtaaaccagtag
ttagatatactgtcactagaaagatgaagaatataaacatctctaaattc
ttgcacttccttcaaaaattcctgaacaatacagttggttttctttgtat
atgatgtacatatagtcttgatcttcaggttagtgaaaagttttttcata
cttcttgaatgagttctccttaatcacatttgagaagaaggcaaggatga
ggctgacagtgattcccagaagggatctccaggtgtgcagaggactgagg
atatactggggacagggagaaccaagcacagcaccccaagaggagatcca
ggaagtgtctcaacatacatgggttcagtactgttaggagacttttacct
ctgaagtgtgtgttcatgaggttttaataaaaaatatcctcactaaaagg
cattagacaagaatttaattttaaaagcttactttacttgtatacattgt
tcttaaactaggttacttcccacacctctaaatgagtaatcttagcactt
aattcctttcaaagatcatagtaaagcaagtgcttataatgttgtttaca
gtattttgtagaaaatttagaagcttcataacaattagtgacaatgaaga
ttgtggcttctaaattaaatccattttaaaatagtgcaaaatgatgatgg
aaaaggagtcttgacagctgaaccctaaactgttcagcaacagaagagat
actttctttttttcttttcttttttgtgaatttgattttttaatttttta
aatttttattttatagatatttctttatatctcaagttggtctagagctc
catctgcacatttggaaataagctgagctactgagaactattgttcaacg
cttaccttcagtgcctgtagtcttattagactcagttaatgag

gaattccttgtcattcctactcgggagaatcacctgcagctggagaattt
agccagtaattcttgaaagtattcttgagctagcactgagtagaaaagtt
acaaaacaaaataagacacacaaaaatatccaaataattatatgcatatt
cattcattcattcattgtaggtttgccataattatctgaactaatttact
gaaaacgtgaagaaacaattttgctttaactatttaaaatttaaaatttt
aaagttgtattaagtgtataatctcctagcccccagcagctaagaccaca
ggtccctactaccagggccagctaaatatcttttaaagtcacagaaaatt
ataggttatgataatttgaacttttccctttatatagaaagttccccatt
gctgaaaatgataggtcagctctgcttgctttttaaatatgtacactact
ttagtgaaagcaatttttcatatgatatattttgatcacagtttcacctc
ccccaactcctcccagatcctccctactttaataaacttaatggtaacac
attatggaagtattaaaaatatgctcatccctttcttttaaaagggctga
gctttgaaattcaactaaaatgttcacttttagagatagaaaattgaaaa
actatgaaaaaatataatggcacatttacactaaatattttagttggctc
actactttgagcatggagagtacttagtcaccagcacccatgcattaagt
gattacagatggactcctacaagcaaaacatcataaactcgcccccgtaa
tcaattgttatttatgtagtttttctttgaataatgaatataatagtgaa
ttaggcacaacctgtacttcactgtaatatcaaattctatttatcattta
tccctgggagcaagcagtatgtaggttggtacttcattggttttagaagc
taaactctgatggaccgtgaagaaaatgatcaactgtacacttcacattc
attctttgagatgtgagttgcgtattctccgcagaaagatgggagttagg
ttgatatagcaattcaacacagtttctgtgatgtaactgcaaacacatgg
aaatagatcttggtaaattctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_123585525_123586729
seq2: B6Ng01-203B21.b_45_1237 (reverse)

seq1  CTCAT--ACTGAGTC--ATAAGACTAACAGGCACTGGGAAAAGGTGAAGG  46
      |||||  ||||||||  |||||||| ||||||||||    ||||| ||| 
seq2  CTCATTAACTGAGTCTAATAAGACT-ACAGGCACTG----AAGGT-AAG-  43

seq1  CTGTTGA--CATAG-TCTCAGGTAGCCTCAGCCCTTATT--CAAATGTGC  91
        |||||   |||| ||||| |||| |||||  ||||||  |||||||||
seq2  -CGTTGAACAATAGTTCTCA-GTAG-CTCAG--CTTATTTCCAAATGTGC  88

seq1  AGATGAAGCTTCTAGACCAACTTGAGATAATAAAGAAAATATCTAATAAA  141
      ||||| ||| |||||||||||||||||| |||||| |||||||| |||||
seq2  AGATGGAGC-TCTAGACCAACTTGAGAT-ATAAAG-AAATATCT-ATAAA  134

seq1  ATAAAATTTTAAAAAATTTAAAAAATCAAATTTCACAAAAAAGAAAAAGA  191
      |||||| ||||||||| ||||||||||||| |||||||||||| ||||||
seq2  ATAAAAATTTAAAAAA-TTAAAAAATCAAA-TTCACAAAAAAG-AAAAGA  181

seq1  AAAAAAGAAAGTATCTTCCTTCTGTTGCTGAACAGTTTAGGGTTCAGCTG  241
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAGTATCT--CTTCTGTTGCTGAACAGTTTAGGGTTCAGCTG  229

seq1  TCAAGACTCCTTTTCCATCATCATTTTGCACTATTTTAAAATGGATTTAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACTCCTTTTCCATCATCATTTTGCACTATTTTAAAATGGATTTAA  279

seq1  TTTAGAAGCCACAATCTTCATTGTCACTAATTGTTATGAAGCTTCTAAAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGCCACAATCTTCATTGTCACTAATTGTTATGAAGCTTCTAAAT  329

seq1  TTTCTACAAAATACTGTAAACAACATTATAAGCACTTGCTTTACTATGAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACAAAATACTGTAAACAACATTATAAGCACTTGCTTTACTATGAT  379

seq1  CTTTGAAAGGAATTAAGTGCTAAGATTACTCATTTAGAGGTGTGGGAAGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAGGAATTAAGTGCTAAGATTACTCATTTAGAGGTGTGGGAAGT  429

seq1  AACCTAGTTTAAGAACAATGTATACAAGTAAAGTAAGCTTTTAAAATTAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGTTTAAGAACAATGTATACAAGTAAAGTAAGCTTTTAAAATTAA  479

seq1  ATTCTTGTCTAATGCCTTTTAGTGAGGATATTTTTTATTAAAACCTCATG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGTCTAATGCCTTTTAGTGAGGATATTTTTTATTAAAACCTCATG  529

seq1  AACACACACTTCAGAGGTAAAAGTCTCCTAACAGTACTGAACCCATGTAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACTTCAGAGGTAAAAGTCTCCTAACAGTACTGAACCCATGTAT  579

seq1  GTTGAGACACTTCCTGGATCTCCTCTTGGGGTGCTGTGCTTGGTTCTCCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGACACTTCCTGGATCTCCTCTTGGGGTGCTGTGCTTGGTTCTCCC  629

seq1  TGTCCCCAGTATATCCTCAGTCCTCTGCACACCTGGAGATCCCTTCTGGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCAGTATATCCTCAGTCCTCTGCACACCTGGAGATCCCTTCTGGG  679

seq1  AATCACTGTCAGCCTCATCCTTGCCTTCTTCTCAAATGTGATTAAGGAGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTGTCAGCCTCATCCTTGCCTTCTTCTCAAATGTGATTAAGGAGA  729

seq1  ACTCATTCAAGAAGTATGAAAAAACTTTTCACTAACCTGAAGATCAAGAC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTCAAGAAGTATGAAAAAACTTTTCACTAACCTGAAGATCAAGAC  779

seq1  TATATGTACATCATATACAAAGAAAACCAACTGTATTGTTCAGGAATTTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTACATCATATACAAAGAAAACCAACTGTATTGTTCAGGAATTTT  829

seq1  TGAAGGAAGTGCAAGAATTTAGAGATGTTTATATTCTTCATCTTTCTAGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAAGTGCAAGAATTTAGAGATGTTTATATTCTTCATCTTTCTAGT  879

seq1  GACAGTATATCTAACTACTGGTTTACTACATTAGTAACCAATGAATTATG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTATATCTAACTACTGGTTTACTACATTAGTAACCAATGAATTATG  929

seq1  CCAAACTAAAATACTGATATTACTTTAGAGTAAGCTCTCTCATTTTTAAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTAAAATACTGATATTACTTTAGAGTAAGCTCTCTCATTTTTAAA  979

seq1  ATGTGTTTATTTATTGTATACTTTTATGATATTTATGTGTTAGTATCTAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTATTTATTGTATACTTTTATGATATTTATGTGTTAGTATCTAT  1029

seq1  GTACATGTGTGCATGTAGATGCATGTTTAATGTATAAGTGTGTATGGGAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGTGTGCATGTAGATGCATGTTTAATGTATAAGTGTGTATGGGAA  1079

seq1  CAAGAAGGAGTAGTTGTATATTTTTCTCAGTTTTCCCCATCTTATTTTTT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGAGTAGTTGTATATTTTTCTCAGTTTTCCCCATCTTATTTTTT  1129

seq1  TATTTATAGTTTTTTTTTTTTAAATGGGAAGTTGCACTGTGTAGTTCTGG  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAGTTTTTTTTTTTTAAATGGGAAGTTGCACTGTGTAGTTCTGG  1179

seq1  CTGGTATGGAATTC  1205
      ||||||||||||||
seq2  CTGGTATGGAATTC  1193


seq1: chr2_123473914_123475043
seq2: B6Ng01-203B21.g_63_1184

seq1  GAATTCCTTGTCATTCCTACTCGGGAGAATCACCTGCAGCTGGAGAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTCATTCCTACTCGGGAGAATCACCTGCAGCTGGAGAATTT  50

seq1  AGCCAGTAATTCTTGAAAGTATTCTTGAGCTAGCACTGAGTAGAAAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTAATTCTTGAAAGTATTCTTGAGCTAGCACTGAGTAGAAAAGTT  100

seq1  ACAAAACAAAATAAGACACACAAAAATATCCAAATAATTATATGCATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAATAAGACACACAAAAATATCCAAATAATTATATGCATATT  150

seq1  CATTCATTCATTCATTGTAGGTTTGCCATAATTATCTGAACTAATTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCATTCATTGTAGGTTTGCCATAATTATCTGAACTAATTTACT  200

seq1  GAAAACGTGAAGAAACAATTTTGCTTTAACTATTTAAAATTTAAAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGTGAAGAAACAATTTTGCTTTAACTATTTAAAATTTAAAATTTT  250

seq1  AAAGTTGTATTAAGTGTATAATCTCCTAGCCCCCAGCAGCTAAGACCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGTATTAAGTGTATAATCTCCTAGCCCCCAGCAGCTAAGACCACA  300

seq1  GGTCCCTACTACCAGGGCCAGCTAAATATCTTTTAAAGTCACAGAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTACTACCAGGGCCAGCTAAATATCTTTTAAAGTCACAGAAAATT  350

seq1  ATAGGTTATGATAATTTGAACTTTTCCCTTTATATAGAAAGTTCCCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTATGATAATTTGAACTTTTCCCTTTATATAGAAAGTTCCCCATT  400

seq1  GCTGAAAATGATAGGTCAGCTCTGCTTGCTTTTTAAATATGTACACTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAATGATAGGTCAGCTCTGCTTGCTTTTTAAATATGTACACTACT  450

seq1  TTAGTGAAAGCAATTTTTCATATGATATATTTTGATCACAGTTTCACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAAAGCAATTTTTCATATGATATATTTTGATCACAGTTTCACCTC  500

seq1  CCCCAACTCCTCCCAGATCCTCCCTACTTTAATAAACTTAATGGTAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTCCTCCCAGATCCTCCCTACTTTAATAAACTTAATGGTAACAC  550

seq1  ATTATGGAAGTATTAAAAATATGCTCATCCCTTTCTTTTAAAAGGGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGAAGTATTAAAAATATGCTCATCCCTTTCTTTTAAAAGGGCTGA  600

seq1  GCTTTGAAATTCAACTAAAATGTTCACTTTTAGAGATAGAAAATTGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAAATTCAACTAAAATGTTCACTTTTAGAGATAGAAAATTGAAAA  650

seq1  ACTATGAAAAAATATAATGGCACATTTACACTAAATATTTTAGTTGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAAAAAATATAATGGCACATTTACACTAAATATTTTAGTTGGCTC  700

seq1  ACTACTTTGAGCATGGAGAGTACTTAGTCACCAGCACCCATGCATTAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTTGAGCATGGAGAGTACTTAGTCACCAGCACCCATGCATTAAGT  750

seq1  GATTACAGATGGACTCCTACAAGCAAAACATCATAAACTCGCCCCCGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAGATGGACTCCTACAAGCAAAACATCATAAACTCGCCCCCGTAA  800

seq1  TCAATTGTTATTTATGTAGTTTTTCTTTGAATAATGAATATAATAGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGTTATTTATGTAGTTTTTCTTTGAATAATGAATATAATAGTGAA  850

seq1  TTAGGCACAACCTGTACTTCACTGTAATATCAAATTCTATTTATCATTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCACAACCTGTACTTCACTGTAATATCAAATTCTATTTATCATTTA  900

seq1  TCCCTGGGAGCAAGCAGTATGTAGGTTGGTACTTCATTGGTTTTAGAAGG  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCCTGGGAGCAAGCAGTATGTAGGTTGGTACTTCATTGGTTTTAGAA-G  949

seq1  CTAAACTCTGATGGACCGTGAAGAAAATGATCAACTGTACAACTTCACAT  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTAAACTCTGATGGACCGTGAAGAAAATGATCAACTGTAC-ACTTCACAT  998

seq1  TCATTCTTTGAGAATGTGAGTTTGCGTA-TCTCCGCAGAAAGATGGGAGT  1049
      |||||||||||| ||||||| ||||||| |||||||||||||||||||||
seq2  TCATTCTTTGAG-ATGTGAG-TTGCGTATTCTCCGCAGAAAGATGGGAGT  1046

seq1  TAGGGTGATATAGC-ATTCAACACAGTTTCCTGTGGATGTTAAACTGCAA  1098
      |||| ||||||||| |||||||||||||| |||| |||||  ||||||||
seq2  TAGGTTGATATAGCAATTCAACACAGTTT-CTGT-GATGT--AACTGCAA  1092

seq1  CACA-AGGGAAATAGATTCTTTGTAAAATTCTT  1130
       ||| | ||||||||| |||| || ||||||||
seq2  -ACACATGGAAATAGA-TCTTGGT-AAATTCTT  1122


| Home | SequenceCutter | Blast | Download |